28 |
28 |
import java.io.IOException;
|
29 |
29 |
import java.io.InputStream;
|
30 |
30 |
import java.io.OutputStream;
|
31 |
|
import java.io.PrintWriter;
|
32 |
31 |
import java.io.UnsupportedEncodingException;
|
33 |
32 |
import java.util.Date;
|
34 |
33 |
import java.util.Map;
|
... | ... | |
62 |
61 |
import org.dataone.service.types.ObjectFormatList;
|
63 |
62 |
import org.dataone.service.types.ObjectLocationList;
|
64 |
63 |
import org.dataone.service.types.Permission;
|
|
64 |
import org.dataone.service.types.QueryType;
|
65 |
65 |
import org.dataone.service.types.Subject;
|
66 |
66 |
import org.dataone.service.types.SystemMetadata;
|
67 |
67 |
import org.jibx.runtime.JiBXException;
|
... | ... | |
135 |
135 |
super.handle(httpVerb);
|
136 |
136 |
|
137 |
137 |
try {
|
138 |
|
//substring off the "d1/cn/" part of the url
|
139 |
|
String resourcePrefix = RESOURCE_BASE_URL + "/cn/";
|
140 |
|
String resource = request.getServletPath();
|
141 |
|
resource = resource.substring(resource.indexOf(resourcePrefix) + resourcePrefix.length());
|
142 |
|
resource = resource.trim();
|
|
138 |
|
|
139 |
// get the resource
|
|
140 |
String resource = request.getPathInfo();
|
|
141 |
resource = resource.substring(resource.indexOf("/") + 1);
|
143 |
142 |
|
|
143 |
// get the rest
|
|
144 |
String extra = null;
|
|
145 |
if (resource.lastIndexOf("/") != -1) {
|
|
146 |
extra = resource.substring(resource.lastIndexOf("/") + 1);
|
|
147 |
}
|
|
148 |
|
144 |
149 |
logMetacat.debug("handling verb " + httpVerb + " request with resource '" + resource + "'");
|
145 |
150 |
boolean status = false;
|
146 |
151 |
|
147 |
152 |
if (resource != null) {
|
148 |
153 |
|
149 |
|
if (resource.equals(RESOURCE_ACCESS_RULES) && httpVerb == PUT) {
|
|
154 |
if (resource.startsWith(RESOURCE_ACCESS_RULES) && httpVerb == PUT) {
|
150 |
155 |
logMetacat.debug("Setting access policy");
|
151 |
156 |
setAccess();
|
152 |
157 |
status = true;
|
153 |
158 |
logMetacat.debug("done setting access");
|
154 |
159 |
|
155 |
|
} else if (resource.equals(RESOURCE_META)) {
|
|
160 |
} else if (resource.startsWith(RESOURCE_META)) {
|
156 |
161 |
logMetacat.debug("Using resource: " + RESOURCE_META);
|
157 |
|
String objectId = request.getPathInfo();
|
158 |
|
if (objectId != null && objectId.length() > 1) {
|
159 |
|
objectId = request.getPathInfo().substring(1);
|
160 |
|
}
|
|
162 |
|
161 |
163 |
// get
|
162 |
164 |
if (httpVerb == GET) {
|
163 |
|
getSystemMetadataObject(objectId);
|
|
165 |
getSystemMetadataObject(extra);
|
164 |
166 |
status = true;
|
165 |
167 |
}
|
166 |
168 |
// post to register system metadata
|
167 |
169 |
if (httpVerb == POST) {
|
168 |
|
registerSystemMetadata(objectId);
|
|
170 |
registerSystemMetadata(extra);
|
169 |
171 |
status = true;
|
170 |
172 |
}
|
171 |
173 |
|
172 |
|
} else if (resource.equals(RESOURCE_RESERVE)) {
|
|
174 |
} else if (resource.startsWith(RESOURCE_RESERVE)) {
|
173 |
175 |
// reserve the ID (in params)
|
174 |
176 |
if (httpVerb == POST) {
|
175 |
177 |
reserve();
|
176 |
178 |
status = true;
|
177 |
179 |
}
|
178 |
|
} else if (resource.equals(RESOURCE_ASSERT_RELATION)) {
|
179 |
|
String objectId = request.getPathInfo();
|
180 |
|
if (objectId != null && objectId.length() > 1) {
|
181 |
|
objectId = request.getPathInfo().substring(1);
|
182 |
|
}
|
|
180 |
} else if (resource.startsWith(RESOURCE_ASSERT_RELATION)) {
|
|
181 |
|
183 |
182 |
// reserve the ID (in params)
|
184 |
183 |
if (httpVerb == GET) {
|
185 |
|
assertRelation(objectId);
|
|
184 |
assertRelation(extra);
|
186 |
185 |
status = true;
|
187 |
186 |
}
|
188 |
|
} else if (resource.equals(RESOURCE_RESOLVE)) {
|
189 |
|
String objectId = request.getPathInfo();
|
190 |
|
if (objectId != null && objectId.length() > 1) {
|
191 |
|
objectId = request.getPathInfo().substring(1);
|
192 |
|
}
|
|
187 |
} else if (resource.startsWith(RESOURCE_RESOLVE)) {
|
|
188 |
|
193 |
189 |
// resolve the object location
|
194 |
190 |
if (httpVerb == GET) {
|
195 |
|
resolve(objectId);
|
|
191 |
resolve(extra);
|
196 |
192 |
status = true;
|
197 |
193 |
}
|
198 |
|
} else if (resource.equals(RESOURCE_OWNER)) {
|
199 |
|
String objectId = request.getPathInfo();
|
200 |
|
if (objectId != null && objectId.length() > 1) {
|
201 |
|
objectId = request.getPathInfo().substring(1);
|
202 |
|
}
|
|
194 |
} else if (resource.startsWith(RESOURCE_OWNER)) {
|
|
195 |
|
203 |
196 |
// set the owner
|
204 |
197 |
if (httpVerb == PUT) {
|
205 |
|
owner(objectId);
|
|
198 |
owner(extra);
|
206 |
199 |
status = true;
|
207 |
200 |
}
|
208 |
|
} else if (resource.equals(RESOURCE_OWNER)) {
|
209 |
|
String objectId = request.getPathInfo();
|
210 |
|
if (objectId != null && objectId.length() > 1) {
|
211 |
|
objectId = request.getPathInfo().substring(1);
|
212 |
|
}
|
|
201 |
} else if (resource.startsWith(RESOURCE_OWNER)) {
|
|
202 |
|
213 |
203 |
// set the owner
|
214 |
204 |
if (httpVerb == PUT) {
|
215 |
|
owner(objectId);
|
|
205 |
owner(extra);
|
216 |
206 |
status = true;
|
217 |
207 |
}
|
218 |
|
} else if (resource.equals(RESOURCE_IS_AUTHORIZED)) {
|
219 |
|
String objectId = request.getPathInfo();
|
220 |
|
if (objectId != null && objectId.length() > 1) {
|
221 |
|
objectId = request.getPathInfo().substring(1);
|
222 |
|
}
|
|
208 |
} else if (resource.startsWith(RESOURCE_IS_AUTHORIZED)) {
|
|
209 |
|
223 |
210 |
// authorized?
|
224 |
211 |
if (httpVerb == GET) {
|
225 |
|
isAuthorized(objectId);
|
|
212 |
isAuthorized(extra);
|
226 |
213 |
status = true;
|
227 |
214 |
}
|
228 |
|
} else if (resource.equals(RESOURCE_OBJECTS)) {
|
|
215 |
} else if (resource.startsWith(RESOURCE_OBJECTS)) {
|
229 |
216 |
logMetacat.debug("Using resource 'object'");
|
230 |
217 |
logMetacat.debug("D1 Rest: Starting resource processing...");
|
231 |
|
|
232 |
|
String objectId = request.getPathInfo();
|
233 |
|
if (objectId != null && objectId.length() > 1) {
|
234 |
|
objectId = request.getPathInfo().substring(1);
|
235 |
|
}
|
236 |
|
else {
|
237 |
|
objectId = null;
|
238 |
|
}
|
239 |
218 |
|
240 |
|
logMetacat.debug("objectId: " + objectId);
|
|
219 |
logMetacat.debug("objectId: " + extra);
|
241 |
220 |
logMetacat.debug("verb:" + httpVerb);
|
242 |
221 |
|
243 |
222 |
if (httpVerb == GET) {
|
244 |
|
getObject(objectId);
|
|
223 |
if (extra != null) {
|
|
224 |
getObject(extra);
|
|
225 |
} else {
|
|
226 |
query();
|
|
227 |
}
|
245 |
228 |
status = true;
|
246 |
229 |
} else if (httpVerb == POST) {
|
247 |
|
putObject(objectId, FUNCTION_NAME_INSERT);
|
|
230 |
putObject(extra, FUNCTION_NAME_INSERT);
|
248 |
231 |
status = true;
|
249 |
232 |
}
|
250 |
233 |
|
251 |
|
} else if (resource.equals(RESOURCE_FORMATS)) {
|
|
234 |
} else if (resource.startsWith(RESOURCE_FORMATS)) {
|
252 |
235 |
logMetacat.debug("Using resource: " + RESOURCE_FORMATS);
|
253 |
236 |
|
254 |
|
// check for a format identifier
|
255 |
|
String fmtid = request.getPathInfo();
|
256 |
237 |
|
257 |
|
if (fmtid != null && fmtid.length() > 1 ) {
|
258 |
|
fmtid = request.getPathInfo().substring(1);
|
259 |
|
} else {
|
260 |
|
fmtid = null;
|
261 |
|
}
|
262 |
238 |
|
263 |
239 |
// handle each verb
|
264 |
240 |
if (httpVerb == GET) {
|
265 |
|
if (fmtid == null) {
|
|
241 |
if (extra == null) {
|
266 |
242 |
// list the formats collection
|
267 |
243 |
listFormats();
|
268 |
244 |
} else {
|
269 |
245 |
// get the specified format
|
270 |
|
getFormat(fmtid);
|
|
246 |
getFormat(extra);
|
271 |
247 |
}
|
272 |
248 |
status = true;
|
273 |
249 |
}
|
274 |
250 |
|
275 |
|
} else if (resource.equals(RESOURCE_LOG)) {
|
|
251 |
} else if (resource.startsWith(RESOURCE_LOG)) {
|
276 |
252 |
logMetacat.debug("Using resource: " + RESOURCE_LOG);
|
277 |
253 |
//handle log events
|
278 |
254 |
if (httpVerb == GET) {
|
... | ... | |
280 |
256 |
status = true;
|
281 |
257 |
}
|
282 |
258 |
|
283 |
|
} else if (resource.equals(RESOURCE_CHECKSUM)) {
|
|
259 |
} else if (resource.startsWith(RESOURCE_CHECKSUM)) {
|
284 |
260 |
logMetacat.debug("Using resource: " + RESOURCE_CHECKSUM);
|
285 |
261 |
//handle checksum requests
|
286 |
262 |
if (httpVerb == GET) {
|
287 |
263 |
|
288 |
|
String guid = request.getPathInfo();
|
289 |
|
if (guid != null && guid.length() > 1) {
|
290 |
|
guid = request.getPathInfo().substring(1); //trim the slash
|
291 |
|
}
|
292 |
|
checksum(guid);
|
|
264 |
checksum(extra);
|
293 |
265 |
status = true;
|
294 |
266 |
}
|
295 |
267 |
}
|
... | ... | |
790 |
762 |
}
|
791 |
763 |
|
792 |
764 |
/**
|
793 |
|
* Earthgrid API > Query Service > Query Function : translates ecogrid query document to metacat query
|
794 |
|
* then calls DBQuery > createResultDocument function and then again translate resultset to ecogrid resultset
|
795 |
|
*
|
796 |
|
* NOTE:
|
797 |
|
* This is the only method that uses EcoGrid classes for its implementation.
|
798 |
|
* It does so because it takes an EcoGrid Query as input, and outputs an
|
799 |
|
* EcoGrid ResultSet document. These documents are parsed by the auto-generated
|
800 |
|
* EcoGrid classes from axis, and so we link to them here rather than re-inventing them.
|
801 |
|
* This creates a circular dependency, because the Metacat classes are needed
|
802 |
|
* to build the EcoGrid implementation, and the EcoGrid jars are needed to build this query()
|
803 |
|
* method. This circularity could be resolved by moving the EcoGrid classes
|
804 |
|
* to Metacat directly. As we transition away from EcoGrid SOAP methods in
|
805 |
|
* favor of these REST interfaces, this circular dependency can be eliminated.
|
806 |
|
*
|
|
765 |
* Pass to the CN search service
|
|
766 |
*
|
|
767 |
* @throws NotImplemented
|
|
768 |
* @throws InvalidRequest
|
|
769 |
* @throws NotAuthorized
|
|
770 |
* @throws ServiceFailure
|
|
771 |
* @throws InvalidToken
|
807 |
772 |
* @throws Exception
|
808 |
773 |
*/
|
809 |
|
private void query() throws Exception {
|
810 |
|
/* This block commented out because of the EcoGrid circular dependency.
|
811 |
|
* For now, query will not be supported until the circularity can be
|
812 |
|
* resolved, probably by moving the ecogrid query syntax transformers
|
813 |
|
* directly into the Metacat codebase. MBJ 2010-02-03
|
814 |
|
|
815 |
|
try {
|
816 |
|
EcogridQueryParser parser = new EcogridQueryParser(request
|
817 |
|
.getReader());
|
818 |
|
parser.parseXML();
|
819 |
|
QueryType queryType = parser.getEcogridQuery();
|
820 |
|
EcogridJavaToMetacatJavaQueryTransformer queryTransformer =
|
821 |
|
new EcogridJavaToMetacatJavaQueryTransformer();
|
822 |
|
QuerySpecification metacatQuery = queryTransformer
|
823 |
|
.transform(queryType);
|
824 |
|
|
825 |
|
DBQuery metacat = new DBQuery();
|
826 |
|
|
827 |
|
boolean useXMLIndex = (new Boolean(PropertyService
|
828 |
|
.getProperty("database.usexmlindex"))).booleanValue();
|
829 |
|
String xmlquery = "query"; // we don't care the query in resultset,
|
830 |
|
// the query can be anything
|
831 |
|
PrintWriter out = null; // we don't want metacat result, so set out null
|
832 |
|
|
833 |
|
// parameter: queryspecification, user, group, usingIndexOrNot
|
834 |
|
StringBuffer result = metacat.createResultDocument(xmlquery,
|
835 |
|
metacatQuery, out, username, groupNames, useXMLIndex);
|
836 |
|
|
837 |
|
// create result set transfer
|
838 |
|
String saxparser = PropertyService.getProperty("xml.saxparser");
|
839 |
|
MetacatResultsetParser metacatResultsetParser = new MetacatResultsetParser(
|
840 |
|
new StringReader(result.toString()), saxparser, queryType
|
841 |
|
.getNamespace().get_value());
|
842 |
|
ResultsetType records = metacatResultsetParser.getEcogridResult();
|
843 |
|
|
844 |
|
System.out
|
845 |
|
.println(EcogridResultsetTransformer.toXMLString(records));
|
846 |
|
response.setContentType("text/xml");
|
847 |
|
out = response.getWriter();
|
848 |
|
out.print(EcogridResultsetTransformer.toXMLString(records));
|
849 |
|
|
850 |
|
} catch (Exception e) {
|
851 |
|
e.printStackTrace();
|
852 |
|
}*/
|
853 |
|
response.setContentType("text/xml");
|
854 |
|
response.setStatus(501);
|
855 |
|
PrintWriter out = response.getWriter();
|
856 |
|
out.print("<error>Query operation not yet supported by Metacat.</error>");
|
857 |
|
out.close();
|
|
774 |
private void query() throws InvalidToken, ServiceFailure, NotAuthorized, InvalidRequest, NotImplemented {
|
|
775 |
|
|
776 |
String query = null;
|
|
777 |
QueryType queryType = null;
|
|
778 |
try {
|
|
779 |
query = params.get("query")[0];
|
|
780 |
} catch (Exception e) {
|
|
781 |
logMetacat.warn("query not specified");
|
|
782 |
}
|
|
783 |
try {
|
|
784 |
String qt = params.get("queryType")[0];
|
|
785 |
queryType = QueryType.valueOf(qt);
|
|
786 |
} catch (Exception e) {
|
|
787 |
logMetacat.warn("queryType not specified");
|
|
788 |
}
|
|
789 |
|
|
790 |
// expecting to throw NotImplemented
|
|
791 |
CNodeService.getInstance().search(session, queryType, query);
|
858 |
792 |
}
|
859 |
793 |
|
860 |
794 |
}
|
route all /d1/cn/* traffic through the CNRestServlet/Handler -- inspect the pathInfo when deciding what action to take and also strip off any extra parts (like pid).
include query() method pass-through to CNodeService