Revision 6707
Added by ben leinfelder over 12 years ago
| src/edu/ucsb/nceas/metacat/dataone/SystemMetadataFactory.java | ||
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| 72 | 72 |
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public class SystemMetadataFactory {
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private static Logger logMetacat = Logger |
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.getLogger(SystemMetadataFactory.class); |
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private static Logger logMetacat = Logger.getLogger(SystemMetadataFactory.class); |
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/** |
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* Creates a system metadata object for insertion into metacat |
| ... | ... | |
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InsufficientKarmaException, ParseLSIDException, |
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PropertyNotFoundException, BaseException, NoSuchAlgorithmException, |
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JiBXException {
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logMetacat.debug("MetacatHandler.createSystemMetadata() called.");
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logMetacat.debug("provided localId: " + localId);
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// create system metadata for the document |
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SystemMetadata sysMeta = new SystemMetadata(); |
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sysMeta.setSerialVersion(BigInteger.valueOf(1)); |
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int rev = IdentifierManager.getInstance().getLatestRevForLocalId( |
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localId); |
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int rev = IdentifierManager.getInstance().getLatestRevForLocalId(localId); |
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AccessionNumber accNum = new AccessionNumber(localId, "NONE"); |
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String guid = null; |
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try {
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// get the guid if it exists |
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guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), |
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rev); |
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guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), rev); |
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} catch (McdbDocNotFoundException dnfe) {
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// otherwise create the mapping |
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logMetacat |
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.debug("There was a problem getting the guid from "
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logMetacat.debug("There was a problem getting the guid from "
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+ "the given localId (docid and revision). The error message was: " |
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+ dnfe.getMessage()); |
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logMetacat.debug("No guid in the identifier table. adding it for "
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+ localId); |
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logMetacat.debug("No guid in the identifier table. adding it for " + localId);
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IdentifierManager.getInstance().createMapping(localId, localId); |
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logMetacat.debug("Mapping created for " + localId);
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logMetacat.debug("accessionNumber: " + accNum);
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guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), |
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rev); |
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guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), rev); |
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} |
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Identifier identifier = new Identifier(); |
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identifier.setValue(guid); |
| ... | ... | |
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} // end try() |
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// get additional docinfo |
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Hashtable<String, Object> docInfo = IdentifierManager.getInstance() |
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.getDocumentInfo(localId); |
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Hashtable<String, Object> docInfo = IdentifierManager.getInstance().getDocumentInfo(localId); |
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// set the default object format |
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String doctype = (String) docInfo.get("doctype");
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ObjectFormatIdentifier fmtid = null; |
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// set the object format, fall back to defaults |
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try {
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fmtid = ObjectFormatCache.getInstance().getFormat(doctype) |
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.getFormatId(); |
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fmtid = ObjectFormatCache.getInstance().getFormat(doctype).getFormatId(); |
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} catch (NotFound nfe) {
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try {
|
| ... | ... | |
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} |
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} catch (NotFound nf) {
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logMetacat |
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.error("There was a problem getting the default format "
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logMetacat.error("There was a problem getting the default format "
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+ "from the ObjectFormatCache: " |
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+ nf.getMessage()); |
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throw nf; |
| ... | ... | |
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} |
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sysMeta.setFormatId(fmtid); |
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logMetacat.debug("The ObjectFormat for " + localId + " is "
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+ fmtid.getValue()); |
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logMetacat.debug("The ObjectFormat for " + localId + " is " + fmtid.getValue());
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// further parse EML documents to get data object format, |
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// describes and describedBy information |
| ... | ... | |
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try {
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DatabaseConnectionPoolInterface connectionPool = MetacatDatabaseConnectionPoolFactory |
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.getDatabaseConnectionPoolInterface(); |
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DataManager dataManager = DataManager.getInstance( |
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connectionPool, connectionPool.getDBAdapterName()); |
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DataPackage dataPackage = dataManager |
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.parseMetadata(inputStream); |
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DatabaseConnectionPoolInterface connectionPool = |
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MetacatDatabaseConnectionPoolFactory.getDatabaseConnectionPoolInterface(); |
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DataManager dataManager = |
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DataManager.getInstance(connectionPool, connectionPool.getDBAdapterName()); |
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DataPackage dataPackage = dataManager.parseMetadata(inputStream); |
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// iterate through the data objects in the EML doc and add |
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// sysmeta |
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logMetacat |
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.debug("In createSystemMetadata() the number of data "
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logMetacat.debug("In createSystemMetadata() the number of data "
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+ "entities is: " |
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+ dataPackage.getEntityNumber()); |
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|
| ... | ... | |
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for (int j = 0; j < dataPackage.getEntityList().length; j++) {
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String dataDocUrl = dataPackage.getEntityList()[j].getURL(); |
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String dataDocMimeType = dataPackage.getEntityList()[j] |
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.getDataFormat(); |
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String dataDocMimeType = dataPackage.getEntityList()[j].getDataFormat(); |
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// default to binary |
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if (dataDocMimeType == null) {
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dataDocMimeType = ObjectFormatCache.getInstance() |
| ... | ... | |
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+ ecogridPrefix.length()); |
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// look up the guid for the data |
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String dataDocid = DocumentUtil |
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.getSmartDocId(dataDocLocalId); |
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int dataRev = DocumentUtil |
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.getRevisionFromAccessionNumber(dataDocLocalId); |
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String dataDocid = DocumentUtil.getSmartDocId(dataDocLocalId); |
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int dataRev = DocumentUtil.getRevisionFromAccessionNumber(dataDocLocalId); |
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SystemMetadata dataSysMeta = null; |
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// check if data system metadata exists |
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String dataGuidString = null; |
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try {
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dataGuidString = IdentifierManager.getInstance() |
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.getGUID(dataDocid, dataRev); |
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dataSysMeta = IdentifierManager.getInstance() |
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.getSystemMetadata(dataGuidString); |
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dataGuidString = IdentifierManager.getInstance().getGUID(dataDocid, dataRev); |
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dataSysMeta = IdentifierManager.getInstance().getSystemMetadata(dataGuidString); |
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} catch (McdbDocNotFoundException nf) {
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// System metadata for data doesn't exist yet, so |
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// create it |
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logMetacat |
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.debug("There was not an existing system metadata "
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logMetacat.debug("There was not an existing system metadata "
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+ "document for " + dataDocLocalId); |
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try {
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logMetacat.debug("Creating a system metadata "
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| ... | ... | |
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dataSysMeta = createSystemMetadata(dataDocLocalId); |
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// now look it up again |
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dataGuidString = IdentifierManager |
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.getInstance().getGUID(dataDocid, |
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dataRev); |
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dataGuidString = IdentifierManager.getInstance().getGUID(dataDocid, dataRev); |
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// set the guid |
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Identifier dataGuid = new Identifier(); |
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dataGuid.setValue(dataGuidString); |
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// set object format |
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logMetacat |
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.debug("Updating system metadata for "
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logMetacat.debug("Updating system metadata for "
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+ dataGuid.getValue() + " to " |
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+ dataDocMimeType); |
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try {
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ObjectFormatIdentifier fmt = ObjectFormatCache |
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.getInstance().getFormat( |
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dataDocMimeType) |
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.getFormatId(); |
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ObjectFormatIdentifier fmt = |
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ObjectFormatCache.getInstance().getFormat(dataDocMimeType).getFormatId(); |
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dataSysMeta.setFormatId(fmt); |
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} catch (NotFound nfe) {
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logMetacat |
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.debug("Couldn't find format identifier for: "
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logMetacat.debug("Couldn't find format identifier for: "
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+ dataDocMimeType |
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+ ". Setting it to application/octet-stream."); |
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ObjectFormatIdentifier newFmtid = new ObjectFormatIdentifier(); |
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newFmtid |
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.setValue("application/octet-stream");
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newFmtid.setValue("application/octet-stream");
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} |
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// update the values |
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HazelcastService.getInstance() |
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.getSystemMetadataMap().put( |
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dataSysMeta.getIdentifier(), |
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dataSysMeta); |
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HazelcastService.getInstance().getSystemMetadataMap().put(dataSysMeta.getIdentifier(), dataSysMeta); |
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} catch (McdbDocNotFoundException mdnf) {
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mdnf.printStackTrace(); |
| ... | ... | |
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} // end for() |
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} catch (ParserConfigurationException pce) {
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logMetacat |
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.debug("There was a problem parsing the EML document. "
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logMetacat.debug("There was a problem parsing the EML document. "
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+ "The error message was: " + pce.getMessage()); |
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} catch (SAXException saxe) {
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logMetacat |
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.debug("There was a problem traversing the EML document. "
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logMetacat.debug("There was a problem traversing the EML document. "
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+ "The error message was: " + saxe.getMessage()); |
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} catch (XPathExpressionException xpee) {
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logMetacat |
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.debug("There was a problem searching the EML document. "
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logMetacat.debug("There was a problem searching the EML document. "
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+ "The error message was: " + xpee.getMessage()); |
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} catch (Exception e) {
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logMetacat |
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.debug("There was a problem creating System Metadata. "
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logMetacat.debug("There was a problem creating System Metadata. "
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+ "The error message was: " + e.getMessage()); |
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} // end try() |
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|
| ... | ... | |
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SimpleDateFormat dateFormat = new SimpleDateFormat("yyyy-MM-DD");
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dateFormat.setTimeZone(TimeZone.getDefault()); |
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Date dateCreated = dateFormat.parse((String) docInfo |
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.get("date_created"));
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Date dateCreated = dateFormat.parse((String) docInfo.get("date_created"));
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sysMeta.setDateUploaded(dateCreated); |
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Date dateUpdated = dateFormat.parse((String) docInfo |
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.get("date_updated"));
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Date dateUpdated = dateFormat.parse((String) docInfo.get("date_updated"));
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sysMeta.setDateSysMetadataModified(dateUpdated); |
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} catch (ParseException pe) {
|
| ... | ... | |
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return sysMeta; |
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} |
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/* |
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/**
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* Find the size (in bytes) of a stream. Note: This needs to refactored out |
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* of MetacatHandler and into a utility when stream i/o in Metacat is |
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* evaluated. |
Also available in: Unified diff
make default formatting a little bit easier to read