Revision 6909
Added by ben leinfelder over 12 years ago
| src/edu/ucsb/nceas/metacat/admin/upgrade/GenerateSystemMetadata.java | ||
|---|---|---|
| 44 | 44 |
import edu.emory.mathcs.backport.java.util.Collections; |
| 45 | 45 |
import edu.ucsb.nceas.metacat.AccessionNumberException; |
| 46 | 46 |
import edu.ucsb.nceas.metacat.DBUtil; |
| 47 |
import edu.ucsb.nceas.metacat.DocumentImpl; |
|
| 48 | 47 |
import edu.ucsb.nceas.metacat.IdentifierManager; |
| 49 | 48 |
import edu.ucsb.nceas.metacat.McdbDocNotFoundException; |
| 50 | 49 |
import edu.ucsb.nceas.metacat.admin.AdminException; |
| 51 | 50 |
import edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory; |
| 52 | 51 |
import edu.ucsb.nceas.metacat.properties.PropertyService; |
| 53 |
import edu.ucsb.nceas.metacat.util.DocumentUtil; |
|
| 54 | 52 |
import edu.ucsb.nceas.utilities.PropertyNotFoundException; |
| 55 | 53 |
import edu.ucsb.nceas.utilities.SortedProperties; |
| 56 | 54 |
|
| ... | ... | |
| 61 | 59 |
public boolean upgrade() throws AdminException {
|
| 62 | 60 |
boolean success = true; |
| 63 | 61 |
// include ORE? |
| 64 |
boolean includeOre = true;
|
|
| 65 |
boolean downloadData = true;
|
|
| 62 |
boolean includeOre = false;
|
|
| 63 |
boolean downloadData = false;
|
|
| 66 | 64 |
|
| 67 | 65 |
try {
|
| 68 | 66 |
//get the list of ids with no SM |
| ... | ... | |
| 85 | 83 |
* Generate SystemMetadata for any object in the object store that does |
| 86 | 84 |
* not already have it. SystemMetadata documents themselves, are, of course, |
| 87 | 85 |
* exempt. This is a utility method for migration of existing object |
| 88 |
* stores to DataONE where SystemMetadata is required for all objects. See |
|
| 89 |
* https://trac.dataone.org/ticket/591 |
|
| 90 |
* @param includeOre |
|
| 91 |
* |
|
| 92 |
* @param token an authtoken with appropriate permissions to read all |
|
| 93 |
* documents in the object store. To work correctly, this should probably |
|
| 94 |
* be an adminstrative credential. |
|
| 95 |
* @throws SQLException |
|
| 96 |
* @throws AccessionNumberException |
|
| 97 |
* @throws NoSuchAlgorithmException |
|
| 98 |
* @throws InvalidRequest |
|
| 99 |
* @throws NotImplemented |
|
| 100 |
* @throws NotFound |
|
| 101 |
* @throws NotAuthorized |
|
| 102 |
* @throws InvalidToken |
|
| 103 |
* @throws PropertyNotFoundException |
|
| 104 |
* @throws McdbDocNotFoundException |
|
| 105 |
* @throws ServiceFailure |
|
| 86 |
* stores to DataONE where SystemMetadata is required for all objects. |
|
| 87 |
* @param idList |
|
| 88 |
* @param includeOre |
|
| 89 |
* @param downloadData |
|
| 90 |
* @throws ServiceFailure |
|
| 91 |
* @throws McdbDocNotFoundException |
|
| 92 |
* @throws PropertyNotFoundException |
|
| 93 |
* @throws InvalidToken |
|
| 94 |
* @throws NotAuthorized |
|
| 95 |
* @throws NotFound |
|
| 96 |
* @throws NotImplemented |
|
| 97 |
* @throws InvalidRequest |
|
| 98 |
* @throws NoSuchAlgorithmException |
|
| 99 |
* @throws AccessionNumberException |
|
| 100 |
* @throws SQLException |
|
| 106 | 101 |
*/ |
| 107 | 102 |
public void generateSystemMetadata(List<String> idList, boolean includeOre, boolean downloadData) |
| 108 | 103 |
throws ServiceFailure, McdbDocNotFoundException, PropertyNotFoundException, InvalidToken, NotAuthorized, |
| ... | ... | |
| 121 | 116 |
log.info("done generating system metadata");
|
| 122 | 117 |
} |
| 123 | 118 |
|
| 119 |
|
|
| 124 | 120 |
/** |
| 125 | 121 |
* Generate SystemMetadata for a particular object with identifier localId. |
| 126 | 122 |
* This is a utility method for migration of existing objects |
| 127 | 123 |
* to DataONE where SystemMetadata is required for all objects. |
| 128 |
* |
|
| 129 |
* @param token an authtoken with appropriate permissions to read all |
|
| 130 |
* documents in the object store. To work correctly, this should |
|
| 131 |
* be an adminstrative credential. |
|
| 132 |
* @param localId the identifier of the object to be processed |
|
| 133 |
* @param includeOre |
|
| 134 |
* @throws ServiceFailure |
|
| 135 |
* @throws SQLException |
|
| 136 |
* @throws AccessionNumberException |
|
| 137 |
* @throws NoSuchAlgorithmException |
|
| 138 |
* @throws InvalidRequest |
|
| 139 |
* @throws NotImplemented |
|
| 140 |
* @throws NotFound |
|
| 141 |
* @throws NotAuthorized |
|
| 142 |
* @throws InvalidToken |
|
| 143 |
* @throws PropertyNotFoundException |
|
| 144 |
* @throws McdbDocNotFoundException |
|
| 145 |
* @throws InvalidSystemMetadata |
|
| 124 |
* @param localId |
|
| 125 |
* @param includeOre |
|
| 126 |
* @param downloadData |
|
| 127 |
* @throws ServiceFailure |
|
| 128 |
* @throws McdbDocNotFoundException |
|
| 129 |
* @throws PropertyNotFoundException |
|
| 130 |
* @throws InvalidToken |
|
| 131 |
* @throws NotAuthorized |
|
| 132 |
* @throws NotFound |
|
| 133 |
* @throws NotImplemented |
|
| 134 |
* @throws InvalidRequest |
|
| 135 |
* @throws NoSuchAlgorithmException |
|
| 136 |
* @throws AccessionNumberException |
|
| 137 |
* @throws SQLException |
|
| 138 |
* @throws InvalidSystemMetadata |
|
| 146 | 139 |
*/ |
| 147 |
public void generateSystemMetadata(String localId, boolean includeOre, boolean downloadData)
|
|
| 140 |
protected void generateSystemMetadata(String localId, boolean includeOre, boolean downloadData)
|
|
| 148 | 141 |
throws ServiceFailure, McdbDocNotFoundException, PropertyNotFoundException, InvalidToken, NotAuthorized, |
| 149 | 142 |
NotFound, NotImplemented, InvalidRequest, NoSuchAlgorithmException, AccessionNumberException, SQLException, InvalidSystemMetadata |
| 150 | 143 |
{
|
Also available in: Unified diff
do NOT generate ORE maps or download data when we do the initial System Metadata generation -- this is deferred until D1 registration.