1 |
5371
|
berkley
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CREATE TABLE systemMetadata (
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2 |
6136
|
leinfelder
|
guid text, -- the globally unique string identifier of the object that the system metadata describes
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3 |
6561
|
leinfelder
|
serial_version VARCHAR(256), --the serial version of the object
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4 |
6136
|
leinfelder
|
date_uploaded TIMESTAMP, -- the date/time the document was first submitted
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5 |
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rights_holder VARCHAR(250), --the user who has rights to the document, usually the first persons to upload it
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6 |
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checksum VARCHAR(512), --the checksum of the doc using the given algorithm (see below)
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7 |
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checksum_algorithm VARCHAR(250), --the algorithm used to calculate the checksum
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8 |
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origin_member_node VARCHAR(250), --the member node where the document was first uploaded
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9 |
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authoritive_member_node VARCHAR(250), --the member node that currently controls the document
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10 |
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date_modified TIMESTAMP, -- the last date/time that the file was changed
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11 |
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submitter VARCHAR(256), -- the user who originally submitted the doc
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12 |
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object_format VARCHAR(256), --the format of the object
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13 |
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size VARCHAR(256), --the size of the object
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14 |
6766
|
leinfelder
|
archived boolean, -- specifies whether this an archived object
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15 |
6136
|
leinfelder
|
replication_allowed boolean, -- replication allowed
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16 |
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number_replicas INT8, -- the number of replicas allowed
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17 |
6375
|
leinfelder
|
obsoletes text, -- the identifier that this record obsoletes
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18 |
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obsoleted_by text, -- the identifier of the record that replaces this record
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19 |
6136
|
leinfelder
|
CONSTRAINT systemMetadata_pk PRIMARY KEY (guid)
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20 |
5371
|
berkley
|
);
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21 |
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22 |
6136
|
leinfelder
|
CREATE TABLE systemMetadataReplicationPolicy (
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23 |
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guid text, -- the globally unique string identifier of the object that the system metadata describes
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24 |
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member_node VARCHAR(250), -- replication member node
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25 |
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policy text, -- the policy (preferred, blocked, etc...TBD)
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26 |
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CONSTRAINT systemMetadataReplicationPolicy_fk
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27 |
6933
|
jones
|
FOREIGN KEY (guid) REFERENCES systemMetadata DEFERRABLE
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28 |
6136
|
leinfelder
|
);
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29 |
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30 |
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CREATE TABLE systemMetadataReplicationStatus (
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31 |
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guid text, -- the globally unique string identifier of the object that the system metadata describes
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32 |
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member_node VARCHAR(250), -- replication member node
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33 |
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status VARCHAR(250), -- replication status
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34 |
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date_verified TIMESTAMP, -- the date replication was verified
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35 |
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CONSTRAINT systemMetadataReplicationStatus_fk
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36 |
6933
|
jones
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FOREIGN KEY (guid) REFERENCES systemMetadata DEFERRABLE
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37 |
6136
|
leinfelder
|
);
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38 |
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39 |
6583
|
leinfelder
|
/*
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40 |
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* Remove the old Identifier table (pre-2.0)
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41 |
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*/
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42 |
6945
|
leinfelder
|
DROP TABLE IF EXISTS identifier;
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43 |
6583
|
leinfelder
|
/*
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44 |
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* Create the new one (DataONE features)
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45 |
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*/
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46 |
5276
|
jones
|
CREATE TABLE identifier (
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47 |
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guid text, -- the globally unique string identifier
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48 |
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docid VARCHAR(250), -- the local document id #
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49 |
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rev INT8, -- the revision part of the local identifier
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50 |
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CONSTRAINT identifier_pk PRIMARY KEY (guid)
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51 |
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);
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52 |
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53 |
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/*
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54 |
6012
|
leinfelder
|
* add the nodedatadate column to the tables that need it
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55 |
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|
*/
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56 |
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ALTER TABLE xml_nodes ADD COLUMN nodedatadate TIMESTAMP;
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57 |
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ALTER TABLE xml_nodes_revisions ADD COLUMN nodedatadate TIMESTAMP;
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58 |
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ALTER TABLE xml_path_index ADD COLUMN nodedatadate TIMESTAMP;
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59 |
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CREATE INDEX xml_path_index_idx5 ON xml_path_index (nodedatadate);
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60 |
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61 |
6542
|
leinfelder
|
/**
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62 |
|
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* track the user-agent for the request
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63 |
|
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*/
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64 |
6730
|
tao
|
ALTER TABLE access_log ADD COLUMN user_agent VARCHAR(512);
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65 |
6542
|
leinfelder
|
|
66 |
6136
|
leinfelder
|
/*
|
67 |
6658
|
leinfelder
|
* Register the new schema
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68 |
5400
|
jones
|
*/
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69 |
|
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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70 |
5709
|
leinfelder
|
VALUES ('Schema', '@eml2_1_1namespace@', '/schema/eml-2.1.1/eml.xsd');
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71 |
6744
|
leinfelder
|
|
72 |
|
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/**
|
73 |
|
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* Generate GUIDs for docid.rev
|
74 |
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*/
|
75 |
|
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INSERT INTO identifier (docid, rev, guid)
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76 |
|
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SELECT docid, rev, docid || '.' || rev FROM xml_documents;
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77 |
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INSERT INTO identifier (docid, rev, guid)
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78 |
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SELECT docid, revisionid, docid || '.' || revisionid FROM xml_revisions;
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79 |
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80 |
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/**
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81 |
6760
|
leinfelder
|
* Add guid in xml_access table
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82 |
6744
|
leinfelder
|
*/
|
83 |
|
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ALTER TABLE xml_access ADD COLUMN guid text;
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84 |
6923
|
leinfelder
|
/**
|
85 |
|
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* Expand accessfileid in xml_access table to hold guids
|
86 |
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*/
|
87 |
|
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ALTER TABLE xml_access ALTER COLUMN accessfileid TYPE text;
|
88 |
6744
|
leinfelder
|
|
89 |
|
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/**
|
90 |
|
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* Upgrade xml_access records to use GUID from identifier table
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91 |
6760
|
leinfelder
|
* NOTE: This duplicates existing access rules for every revision of a document
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92 |
6744
|
leinfelder
|
*/
|
93 |
|
|
INSERT INTO xml_access (
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94 |
|
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guid, principal_name, permission, perm_type, perm_order,
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95 |
|
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
|
96 |
|
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)
|
97 |
|
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SELECT
|
98 |
|
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id.guid, xa.principal_name, xa.permission, xa.perm_type, xa.perm_order,
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99 |
|
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xa.docid, xa.accessfileid, xa.begin_time, xa.end_time, xa.ticket_count, xa.subtreeid, xa.startnodeid, xa.endnodeid
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100 |
|
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FROM identifier id, xml_access xa
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101 |
|
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WHERE id.docid = xa.docid;
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102 |
|
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|
103 |
|
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/**
|
104 |
6760
|
leinfelder
|
* Include inline data access rows -- they have a special guid: 'scope.docid.rev.index'
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105 |
6744
|
leinfelder
|
*/
|
106 |
|
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INSERT INTO xml_access (
|
107 |
|
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guid, principal_name, permission, perm_type, perm_order,
|
108 |
|
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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109 |
|
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)
|
110 |
|
|
SELECT
|
111 |
|
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docid, principal_name, permission, perm_type, perm_order,
|
112 |
|
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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113 |
|
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FROM xml_access
|
114 |
|
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WHERE docid like '%.%.%.%';
|
115 |
|
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|
116 |
|
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/**
|
117 |
6762
|
leinfelder
|
* Update the accessfileid to use their guid
|
118 |
|
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* NOTE: uses the last revision's guid as the new value for accessfileid
|
119 |
6744
|
leinfelder
|
*/
|
120 |
|
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UPDATE xml_access
|
121 |
|
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SET accessfileid = id.guid
|
122 |
|
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FROM identifier id, xml_access xa
|
123 |
|
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WHERE xa.accessfileid = id.docid
|
124 |
6762
|
leinfelder
|
AND xa.guid IS NOT null
|
125 |
6760
|
leinfelder
|
AND id.rev =
|
126 |
6763
|
leinfelder
|
(SELECT MAX(id2.rev) FROM identifier id2 WHERE id.docid = id2.docid);
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127 |
6744
|
leinfelder
|
|
128 |
|
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/**
|
129 |
|
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* Remove old access rules
|
130 |
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*/
|
131 |
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DELETE FROM xml_access WHERE guid is null;
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132 |
|
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|
133 |
|
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/**
|
134 |
|
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* clean up the xml_access table
|
135 |
|
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*/
|
136 |
|
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ALTER TABLE xml_access DROP COLUMN docid;
|
137 |
|
|
|
138 |
5400
|
jones
|
/*
|
139 |
5276
|
jones
|
* update the database version
|
140 |
|
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*/
|
141 |
|
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UPDATE db_version SET status=0;
|
142 |
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|
143 |
|
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INSERT INTO db_version (version, status, date_created)
|
144 |
6550
|
leinfelder
|
VALUES ('2.0.0', 1, CURRENT_DATE);
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