Revision 6961
Added by ben leinfelder almost 13 years ago
| src/edu/ucsb/nceas/metacat/dataone/SystemMetadataFactory.java | ||
|---|---|---|
| 98 | 98 |
|
| 99 | 99 |
private static final String resourceMapPrefix = "resourceMap_"; |
| 100 | 100 |
private static Logger logMetacat = Logger.getLogger(SystemMetadataFactory.class); |
| 101 |
/** |
|
| 102 |
* use this flag if you want to update any existing system metadata values with generated content |
|
| 103 |
*/ |
|
| 104 |
private static boolean updateExisting = true; |
|
| 101 | 105 |
|
| 102 | 106 |
/** |
| 103 | 107 |
* Creates a system metadata object for insertion into metacat |
| ... | ... | |
| 122 | 126 |
PropertyNotFoundException, BaseException, NoSuchAlgorithmException, |
| 123 | 127 |
JiBXException, AccessControlException, HandlerException, SAXException, AccessException {
|
| 124 | 128 |
|
| 125 |
logMetacat.debug("MetacatHandler.createSystemMetadata() called.");
|
|
| 129 |
logMetacat.debug("createSystemMetadata() called.");
|
|
| 126 | 130 |
logMetacat.debug("provided localId: " + localId);
|
| 127 | 131 |
|
| 128 |
// create system metadata for the document |
|
| 129 |
SystemMetadata sysMeta = new SystemMetadata(); |
|
| 130 |
sysMeta.setSerialVersion(BigInteger.valueOf(1)); |
|
| 131 |
sysMeta.setArchived(false); |
|
| 132 |
// check for system metadata |
|
| 133 |
SystemMetadata sysMeta = null; |
|
| 134 |
|
|
| 132 | 135 |
AccessionNumber accNum = new AccessionNumber(localId, "NONE"); |
| 133 | 136 |
int rev = Integer.valueOf(accNum.getRev()); |
| 134 |
|
|
| 137 |
|
|
| 138 |
// get/make the guid |
|
| 139 |
String guid = null; |
|
| 140 |
try {
|
|
| 141 |
// get the guid if it exists |
|
| 142 |
guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), rev); |
|
| 143 |
} catch (McdbDocNotFoundException dnfe) {
|
|
| 144 |
// otherwise create the mapping |
|
| 145 |
logMetacat.debug("There was a problem getting the guid from "
|
|
| 146 |
+ "the given localId (docid and revision). The error message was: " |
|
| 147 |
+ dnfe.getMessage()); |
|
| 148 |
logMetacat.debug("No guid in the identifier table. adding it for " + localId);
|
|
| 149 |
IdentifierManager.getInstance().createMapping(localId, localId); |
|
| 150 |
logMetacat.debug("Mapping created for " + localId);
|
|
| 151 |
logMetacat.debug("accessionNumber: " + accNum);
|
|
| 152 |
guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), rev); |
|
| 153 |
|
|
| 154 |
} |
|
| 155 |
|
|
| 156 |
// look up existing system metadata if it exists |
|
| 157 |
Identifier identifier = new Identifier(); |
|
| 158 |
identifier.setValue(guid); |
|
| 159 |
try {
|
|
| 160 |
sysMeta = HazelcastService.getInstance().getSystemMetadataMap().get(identifier); |
|
| 161 |
// TODO: if this is the case, we could return here -- what else do we gain? |
|
| 162 |
if (!updateExisting ) {
|
|
| 163 |
return sysMeta; |
|
| 164 |
} |
|
| 165 |
} catch (Exception e) {
|
|
| 166 |
// create system metadata |
|
| 167 |
sysMeta = new SystemMetadata(); |
|
| 168 |
sysMeta.setIdentifier(identifier); |
|
| 169 |
sysMeta.setSerialVersion(BigInteger.valueOf(1)); |
|
| 170 |
sysMeta.setArchived(false); |
|
| 171 |
} |
|
| 172 |
|
|
| 135 | 173 |
// get the data or metadata object |
| 136 | 174 |
InputStream inputStream; |
| 137 | 175 |
try {
|
| ... | ... | |
| 167 | 205 |
throw ioe; |
| 168 | 206 |
|
| 169 | 207 |
} |
| 170 |
|
|
| 171 |
// get/make the guid |
|
| 172 |
String guid = null; |
|
| 173 |
try {
|
|
| 174 |
// get the guid if it exists |
|
| 175 |
guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), rev); |
|
| 176 |
} catch (McdbDocNotFoundException dnfe) {
|
|
| 177 |
// otherwise create the mapping |
|
| 178 |
logMetacat.debug("There was a problem getting the guid from "
|
|
| 179 |
+ "the given localId (docid and revision). The error message was: " |
|
| 180 |
+ dnfe.getMessage()); |
|
| 181 |
logMetacat.debug("No guid in the identifier table. adding it for " + localId);
|
|
| 182 |
IdentifierManager.getInstance().createMapping(localId, localId); |
|
| 183 |
logMetacat.debug("Mapping created for " + localId);
|
|
| 184 |
logMetacat.debug("accessionNumber: " + accNum);
|
|
| 185 |
guid = IdentifierManager.getInstance().getGUID(accNum.getDocid(), rev); |
|
| 186 |
} |
|
| 187 |
Identifier identifier = new Identifier(); |
|
| 188 |
identifier.setValue(guid); |
|
| 189 | 208 |
|
| 190 |
// set the id |
|
| 191 |
sysMeta.setIdentifier(identifier); |
|
| 192 |
|
|
| 193 | 209 |
// get additional docinfo |
| 194 | 210 |
Hashtable<String, String> docInfo = ReplicationService.getDocumentInfoMap(localId); |
| 195 | 211 |
// set the default object format |
| ... | ... | |
| 450 | 466 |
if (dataSysMeta == null) {
|
| 451 | 467 |
// System metadata for data doesn't exist yet, so create it |
| 452 | 468 |
logMetacat.debug("There was not an existing system metadata document for " + dataDocLocalId);
|
| 453 |
try {
|
|
| 454 |
logMetacat.debug("Creating a system metadata " + "document for " + dataDocLocalId);
|
|
| 455 |
dataSysMeta = createSystemMetadata(dataDocLocalId, includeORE, false); |
|
| 469 |
logMetacat.debug("Creating a system metadata " + "document for " + dataDocLocalId);
|
|
| 470 |
dataSysMeta = createSystemMetadata(dataDocLocalId, includeORE, false); |
|
| 471 |
|
|
| 472 |
// now look it up again |
|
| 473 |
dataGuidString = IdentifierManager.getInstance().getGUID(dataDocid, dataRev); |
|
| 474 |
|
|
| 475 |
// set the guid |
|
| 476 |
dataGuid.setValue(dataGuidString); |
|
| 477 |
|
|
| 478 |
// inherit access rules from metadata, if we don't have our own |
|
| 479 |
if (remoteData) {
|
|
| 480 |
dataSysMeta.setAccessPolicy(sysMeta.getAccessPolicy()); |
|
| 481 |
// TODO: use access rules defined in EML, per data file |
|
| 482 |
} |
|
| 456 | 483 |
|
| 457 |
// now look it up again |
|
| 458 |
dataGuidString = IdentifierManager.getInstance().getGUID(dataDocid, dataRev); |
|
| 459 |
|
|
| 460 |
// set the guid |
|
| 461 |
dataGuid.setValue(dataGuidString); |
|
| 462 |
|
|
| 463 |
// set object format |
|
| 464 |
logMetacat.debug("Updating system metadata for "
|
|
| 465 |
+ dataGuid.getValue() + " to " |
|
| 466 |
+ dataDocMimeType); |
|
| 467 |
try {
|
|
| 468 |
ObjectFormatIdentifier fmt = |
|
| 469 |
ObjectFormatCache.getInstance().getFormat(dataDocMimeType).getFormatId(); |
|
| 470 |
dataSysMeta.setFormatId(fmt); |
|
| 471 |
} catch (NotFound nfe) {
|
|
| 472 |
logMetacat.debug("Couldn't find format identifier for: "
|
|
| 473 |
+ dataDocMimeType |
|
| 474 |
+ ". Setting it to application/octet-stream."); |
|
| 475 |
ObjectFormatIdentifier newFmtid = new ObjectFormatIdentifier(); |
|
| 476 |
newFmtid.setValue("application/octet-stream");
|
|
| 477 |
} |
|
| 478 |
|
|
| 479 |
// inherit access rules from metadata, if we don't have our own |
|
| 480 |
if (remoteData) {
|
|
| 481 |
dataSysMeta.setAccessPolicy(sysMeta.getAccessPolicy()); |
|
| 482 |
// TODO: use access rules defined in EML, per data file |
|
| 483 |
} |
|
| 484 |
|
|
| 485 |
// update the values |
|
| 486 |
HazelcastService.getInstance().getSystemMetadataMap().put(dataSysMeta.getIdentifier(), dataSysMeta); |
|
| 487 |
|
|
| 488 |
|
|
| 489 |
} catch (McdbDocNotFoundException mdnf) {
|
|
| 490 |
mdnf.printStackTrace(); |
|
| 491 |
throw mdnf; |
|
| 492 |
} catch (NumberFormatException nfe) {
|
|
| 493 |
nfe.printStackTrace(); |
|
| 494 |
throw nfe; |
|
| 495 |
} catch (AccessionNumberException ane) {
|
|
| 496 |
ane.printStackTrace(); |
|
| 497 |
throw ane; |
|
| 498 |
} catch (SQLException sqle) {
|
|
| 499 |
sqle.printStackTrace(); |
|
| 500 |
throw sqle; |
|
| 501 |
} catch (NoSuchAlgorithmException nsae) {
|
|
| 502 |
nsae.printStackTrace(); |
|
| 503 |
throw nsae; |
|
| 504 |
} catch (IOException ioe) {
|
|
| 505 |
ioe.printStackTrace(); |
|
| 506 |
throw ioe; |
|
| 507 |
} catch (PropertyNotFoundException pnfe) {
|
|
| 508 |
pnfe.printStackTrace(); |
|
| 509 |
throw pnfe; |
|
| 510 |
} catch (BaseException be) {
|
|
| 511 |
be.printStackTrace(); |
|
| 512 |
throw be; |
|
| 513 |
} |
|
| 514 |
|
|
| 515 | 484 |
} |
| 516 | 485 |
|
| 517 |
// part of the ORE package |
|
| 486 |
// set object format for the data file |
|
| 487 |
logMetacat.debug("Updating system metadata for "
|
|
| 488 |
+ dataGuid.getValue() + " to " |
|
| 489 |
+ dataDocMimeType); |
|
| 490 |
try {
|
|
| 491 |
ObjectFormatIdentifier fmt = |
|
| 492 |
ObjectFormatCache.getInstance().getFormat(dataDocMimeType).getFormatId(); |
|
| 493 |
dataSysMeta.setFormatId(fmt); |
|
| 494 |
} catch (NotFound nfe) {
|
|
| 495 |
logMetacat.debug("Couldn't find format identifier for: "
|
|
| 496 |
+ dataDocMimeType |
|
| 497 |
+ ". Setting it to application/octet-stream."); |
|
| 498 |
ObjectFormatIdentifier newFmtid = new ObjectFormatIdentifier(); |
|
| 499 |
newFmtid.setValue("application/octet-stream");
|
|
| 500 |
} |
|
| 501 |
|
|
| 502 |
// update the values |
|
| 503 |
HazelcastService.getInstance().getSystemMetadataMap().put(dataSysMeta.getIdentifier(), dataSysMeta); |
|
| 504 |
|
|
| 505 |
// include as part of the ORE package |
|
| 518 | 506 |
dataIds.add(dataGuid); |
| 519 | 507 |
|
| 520 | 508 |
} // end if (EML package) |
Also available in: Unified diff
system metadata generation optionally skips entries that have already been generated (data size, checksum) but allows the latest EML that describes them to have the last word on object format