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/**
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 *  '$RCSfile$'
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 *  Copyright: 2000-2011 Regents of the University of California and the
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 *              National Center for Ecological Analysis and Synthesis
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 *
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 *   '$Author:  $'
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 *     '$Date:  $'
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 *
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 2 of the License, or
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 * (at your option) any later version.
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 *
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 * This program is distributed in the hope that it will be useful,
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 * GNU General Public License for more details.
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 *
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
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 */
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package edu.ucsb.nceas.metacat.dataone;
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import java.io.IOException;
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import java.io.InputStream;
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import java.math.BigInteger;
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import java.security.NoSuchAlgorithmException;
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import java.sql.SQLException;
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import java.util.Calendar;
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import java.util.Date;
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import java.util.List;
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import java.util.Timer;
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import javax.servlet.http.HttpServletRequest;
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import org.apache.commons.io.IOUtils;
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import org.apache.log4j.Logger;
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import org.dataone.client.CNode;
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import org.dataone.client.D1Client;
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import org.dataone.client.MNode;
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import org.dataone.client.auth.CertificateManager;
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import org.dataone.configuration.Settings;
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import org.dataone.service.exceptions.BaseException;
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import org.dataone.service.exceptions.IdentifierNotUnique;
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import org.dataone.service.exceptions.InsufficientResources;
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import org.dataone.service.exceptions.InvalidRequest;
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import org.dataone.service.exceptions.InvalidSystemMetadata;
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import org.dataone.service.exceptions.InvalidToken;
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import org.dataone.service.exceptions.NotAuthorized;
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import org.dataone.service.exceptions.NotFound;
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import org.dataone.service.exceptions.NotImplemented;
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import org.dataone.service.exceptions.ServiceFailure;
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import org.dataone.service.exceptions.SynchronizationFailed;
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import org.dataone.service.exceptions.UnsupportedType;
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import org.dataone.service.mn.tier1.v1.MNCore;
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import org.dataone.service.mn.tier1.v1.MNRead;
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import org.dataone.service.mn.tier2.v1.MNAuthorization;
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import org.dataone.service.mn.tier3.v1.MNStorage;
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import org.dataone.service.mn.tier4.v1.MNReplication;
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import org.dataone.service.types.v1.Checksum;
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import org.dataone.service.types.v1.Event;
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import org.dataone.service.types.v1.Group;
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import org.dataone.service.types.v1.Identifier;
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import org.dataone.service.types.v1.Log;
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import org.dataone.service.types.v1.LogEntry;
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import org.dataone.service.types.v1.MonitorInfo;
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import org.dataone.service.types.v1.MonitorList;
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import org.dataone.service.types.v1.Node;
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import org.dataone.service.types.v1.NodeList;
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import org.dataone.service.types.v1.NodeReference;
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import org.dataone.service.types.v1.NodeState;
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import org.dataone.service.types.v1.NodeType;
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import org.dataone.service.types.v1.ObjectFormatIdentifier;
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import org.dataone.service.types.v1.ObjectList;
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import org.dataone.service.types.v1.Permission;
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import org.dataone.service.types.v1.Ping;
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import org.dataone.service.types.v1.ReplicationStatus;
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import org.dataone.service.types.v1.Schedule;
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import org.dataone.service.types.v1.Service;
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import org.dataone.service.types.v1.Services;
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import org.dataone.service.types.v1.Session;
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import org.dataone.service.types.v1.Subject;
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import org.dataone.service.types.v1.Synchronization;
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import org.dataone.service.types.v1.SystemMetadata;
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import org.dataone.service.types.v1.util.ChecksumUtil;
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import org.dataone.service.util.Constants;
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import edu.ucsb.nceas.metacat.DocumentImpl;
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import edu.ucsb.nceas.metacat.EventLog;
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import edu.ucsb.nceas.metacat.IdentifierManager;
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import edu.ucsb.nceas.metacat.McdbDocNotFoundException;
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import edu.ucsb.nceas.metacat.MetacatHandler;
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import edu.ucsb.nceas.metacat.client.InsufficientKarmaException;
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import edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService;
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import edu.ucsb.nceas.metacat.properties.PropertyService;
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import edu.ucsb.nceas.metacat.util.SystemUtil;
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import edu.ucsb.nceas.utilities.PropertyNotFoundException;
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/**
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 * Represents Metacat's implementation of the DataONE Member Node 
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 * service API. Methods implement the various MN* interfaces, and methods common
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 * to both Member Node and Coordinating Node interfaces are found in the
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 * D1NodeService base class.
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 * 
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 * Implements:
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 * MNCore.ping()
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 * MNCore.getLogRecords()
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 * MNCore.getObjectStatistics()
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 * MNCore.getOperationStatistics()
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 * MNCore.getStatus()
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 * MNCore.getCapabilities()
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 * MNRead.get()
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 * MNRead.getSystemMetadata()
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 * MNRead.describe()
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 * MNRead.getChecksum()
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 * MNRead.listObjects()
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 * MNRead.synchronizationFailed()
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 * MNAuthorization.isAuthorized()
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 * MNAuthorization.setAccessPolicy()
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 * MNStorage.create()
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 * MNStorage.update()
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 * MNStorage.delete()
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 * MNReplication.replicate()
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 * 
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 */
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public class MNodeService extends D1NodeService 
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    implements MNAuthorization, MNCore, MNRead, MNReplication, MNStorage {
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    /* the logger instance */
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    private Logger logMetacat = null;
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    /* A reference to a remote Memeber Node */
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    private MNode mn;
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    /* A reference to a Coordinating Node */
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    private CNode cn;
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    /**
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     * Singleton accessor to get an instance of MNodeService.
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     * 
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     * @return instance - the instance of MNodeService
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     */
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    public static MNodeService getInstance(HttpServletRequest request) {
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        return new MNodeService(request);
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    }
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    /**
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     * Constructor, private for singleton access
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     */
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    private MNodeService(HttpServletRequest request) {
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        super(request);
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        logMetacat = Logger.getLogger(MNodeService.class);
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        // set the Member Node certificate file location
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        CertificateManager.getInstance().setCertificateLocation(Settings.getConfiguration().getString("D1Client.certificate.file"));
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    }
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    /**
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     * Deletes an object from the Member Node, where the object is either a 
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     * data object or a science metadata object.
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     * 
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     * @param session - the Session object containing the credentials for the Subject
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     * @param pid - The object identifier to be deleted
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     * 
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     * @return pid - the identifier of the object used for the deletion
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     * 
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     * @throws InvalidToken
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     * @throws ServiceFailure
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     * @throws NotAuthorized
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     * @throws NotFound
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     * @throws NotImplemented
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     * @throws InvalidRequest
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     */
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    @Override
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    public Identifier delete(Session session, Identifier pid) 
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        throws InvalidToken, ServiceFailure, NotAuthorized, NotFound, NotImplemented {
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    	// defer to superclass implementation
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        return super.delete(session, pid);
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    }
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    /**
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     * Updates an existing object by creating a new object identified by 
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     * newPid on the Member Node which explicitly obsoletes the object 
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     * identified by pid through appropriate changes to the SystemMetadata 
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     * of pid and newPid
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     * 
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     * @param session - the Session object containing the credentials for the Subject
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     * @param pid - The identifier of the object to be updated
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     * @param object - the new object bytes
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     * @param sysmeta - the new system metadata describing the object
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     * 
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     * @return newPid - the identifier of the new object
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     * 
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     * @throws InvalidToken
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     * @throws ServiceFailure
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     * @throws NotAuthorized
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     * @throws NotFound
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     * @throws NotImplemented
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     * @throws IdentifierNotUnique
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     * @throws UnsupportedType
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     * @throws InsufficientResources
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     * @throws InvalidSystemMetadata
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     * @throws InvalidRequest
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     */
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    @Override
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    public Identifier update(Session session, Identifier pid, InputStream object, 
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        Identifier newPid, SystemMetadata sysmeta) 
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        throws InvalidToken, ServiceFailure, NotAuthorized, IdentifierNotUnique, 
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        UnsupportedType, InsufficientResources, NotFound, 
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        InvalidSystemMetadata, NotImplemented, InvalidRequest {
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        String localId = null;
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        boolean allowed = false;
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        boolean isScienceMetadata = false;
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        if (session == null) {
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        	throw new InvalidToken("1210", "No session has been provided");
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        }
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        Subject subject = session.getSubject();
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        // do we have a valid pid?
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        if (pid == null || pid.getValue().trim().equals("")) {
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            throw new InvalidRequest("1202", "The provided identifier was invalid.");
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        }
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        // check for the existing identifier
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        try {
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            localId = IdentifierManager.getInstance().getLocalId(pid.getValue());
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        } catch (McdbDocNotFoundException e) {
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            throw new InvalidRequest("1202", "The object with the provided " + 
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                "identifier was not found.");
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        }
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        // set the originating node
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        NodeReference originMemberNode = this.getCapabilities().getIdentifier();
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        sysmeta.setOriginMemberNode(originMemberNode);
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        // set the submitter to match the certificate
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        sysmeta.setSubmitter(subject);
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        // set the dates
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        Date now = Calendar.getInstance().getTime();
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        sysmeta.setDateSysMetadataModified(now);
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        sysmeta.setDateUploaded(now);
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        // does the subject have WRITE ( == update) priveleges on the pid?
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        allowed = isAuthorized(session, pid, Permission.WRITE);
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        if (allowed) {
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        	// check quality of SM
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        	if (sysmeta.getObsoletedBy() != null) {
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        		throw new InvalidSystemMetadata("1300", "Cannot include obsoletedBy when updating object");
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        	}
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        	if (sysmeta.getObsoletes() != null && !sysmeta.getObsoletes().getValue().equals(pid.getValue())) {
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        		throw new InvalidSystemMetadata("1300", "The identifier provided in obsoletes does not match old Identifier");
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        	}
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            // get the existing system metadata for the object
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            SystemMetadata existingSysMeta = getSystemMetadata(session, pid);
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            // add the newPid to the obsoletedBy list for the existing sysmeta
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            existingSysMeta.setObsoletedBy(newPid);
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            // then update the existing system metadata
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            updateSystemMetadata(existingSysMeta);
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            // prep the new system metadata, add pid to the affected lists
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            sysmeta.setObsoletes(pid);
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            //sysmeta.addDerivedFrom(pid);
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            isScienceMetadata = isScienceMetadata(sysmeta);
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            // do we have XML metadata or a data object?
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            if (isScienceMetadata) {
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                // update the science metadata XML document
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                // TODO: handle non-XML metadata/data documents (like netCDF)
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                // TODO: don't put objects into memory using stream to string
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                String objectAsXML = "";
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                try {
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                    objectAsXML = IOUtils.toString(object, "UTF-8");
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                    localId = insertOrUpdateDocument(objectAsXML, newPid, session, "update");
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                    // register the newPid and the generated localId
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                    if (newPid != null) {
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                        IdentifierManager.getInstance().createMapping(newPid.getValue(), localId);
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                    }
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                } catch (IOException e) {
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                    String msg = "The Node is unable to create the object. " + "There was a problem converting the object to XML";
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                    logMetacat.info(msg);
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                    throw new ServiceFailure("1310", msg + ": " + e.getMessage());
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                }
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            } else {
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                // update the data object
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                localId = insertDataObject(object, newPid, session);
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            }
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            // and insert the new system metadata
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            insertSystemMetadata(sysmeta);
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            // log the update event
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            EventLog.getInstance().log(request.getRemoteAddr(), request.getHeader("User-Agent"), subject.getValue(), localId, Event.UPDATE.toString());
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        } else {
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            throw new NotAuthorized("1200", "The provided identity does not have " + "permission to UPDATE the object identified by " + pid.getValue()
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                    + " on the Member Node.");
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        }
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        return newPid;
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    }
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    public Identifier create(Session session, Identifier pid, InputStream object, SystemMetadata sysmeta) throws InvalidToken, ServiceFailure, NotAuthorized,
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            IdentifierNotUnique, UnsupportedType, InsufficientResources, InvalidSystemMetadata, NotImplemented, InvalidRequest {
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        // check for null session
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        if (session == null) {
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          throw new InvalidToken("1110", "Session is required to WRITE to the Node.");
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        }
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        // set the submitter to match the certificate
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        sysmeta.setSubmitter(session.getSubject());
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        // set the originating node
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        NodeReference originMemberNode = this.getCapabilities().getIdentifier();
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        sysmeta.setOriginMemberNode(originMemberNode);
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        sysmeta.setArchived(false);
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        // set the dates
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        Date now = Calendar.getInstance().getTime();
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        sysmeta.setDateSysMetadataModified(now);
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        sysmeta.setDateUploaded(now);
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        // set the serial version
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        sysmeta.setSerialVersion(BigInteger.ZERO);
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        // call the shared impl
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        return super.create(session, pid, object, sysmeta);
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    }
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    /**
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     * Called by a Coordinating Node to request that the Member Node create a 
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     * copy of the specified object by retrieving it from another Member 
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     * Node and storing it locally so that it can be made accessible to 
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     * the DataONE system.
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     * 
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     * @param session - the Session object containing the credentials for the Subject
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     * @param sysmeta - Copy of the CN held system metadata for the object
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     * @param sourceNode - A reference to node from which the content should be 
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     *                     retrieved. The reference should be resolved by 
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     *                     checking the CN node registry.
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     * 
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     * @return true if the replication succeeds
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     * 
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     * @throws ServiceFailure
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     * @throws NotAuthorized
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     * @throws NotImplemented
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     * @throws UnsupportedType
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     * @throws InsufficientResources
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     * @throws InvalidRequest
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     */
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    @Override
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    public boolean replicate(Session session, SystemMetadata sysmeta,
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            NodeReference sourceNode) throws NotImplemented, ServiceFailure,
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            NotAuthorized, InvalidRequest, InsufficientResources,
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            UnsupportedType {
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        if (session != null && sysmeta != null && sourceNode != null) {
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            logMetacat.info("MNodeService.replicate() called with parameters: \n" +
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                            "\tSession.Subject      = "                           +
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                            session.getSubject().getValue() + "\n"                +
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                            "\tSystemMetadata       = " + sysmeta.toString()      +
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                            "\n" + "\tSource NodeReference ="                     +
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                            sourceNode.getValue());
384
        }
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        boolean result = false;
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        String nodeIdStr = null;
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        NodeReference nodeId = null;
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        // get the referenced object
390
        Identifier pid = sysmeta.getIdentifier();
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        // get from the membernode
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        // TODO: switch credentials for the server retrieval?
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        this.mn = D1Client.getMN(sourceNode);
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        this.cn = D1Client.getCN();
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        InputStream object = null;
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        Session thisNodeSession = null;
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        SystemMetadata localSystemMetadata = null;
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        BaseException failure = null;
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        String localId = null;
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402
        // TODO: check credentials
403
        // cannot be called by public
404
        if (session == null || session.getSubject() == null) {
405
            String msg = "No session was provided.";
406
            failure = new NotAuthorized("2152", msg);
407
            setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, failure);
408
            logMetacat.info(msg);
409
            return true;
410
        }
411

    
412

    
413
        // get the local node id
414
        try {
415
            nodeIdStr = PropertyService.getProperty("dataone.nodeId");
416
            nodeId = new NodeReference();
417
            nodeId.setValue(nodeIdStr);
418

    
419
        } catch (PropertyNotFoundException e1) {
420
            String msg = "Couldn't get dataone.nodeId property: " + e1.getMessage();
421
            failure = new ServiceFailure("2151", msg);
422
            setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, failure);
423
            logMetacat.error(msg);
424
            return true;
425

    
426
        }
427
        
428

    
429
        try {
430
            // do we already have a replica?
431
            try {
432
                localId = IdentifierManager.getInstance().getLocalId(pid.getValue());
433

    
434
                String msg = "Can't read the object bytes properly, replica is invalid.";
435
                ServiceFailure serviceFailure = new ServiceFailure("2151", msg);
436
                
437
                // if we have a local id, get the local object
438
                try {
439
                    object = MetacatHandler.read(localId);
440
                    
441
                } catch (Exception e) {
442
                    // let the CN know that the replication failed
443
                    setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, serviceFailure);  
444
                    throw serviceFailure;
445
                    
446
                }
447

    
448
            } catch (McdbDocNotFoundException e) {
449
                logMetacat.info("No replica found. Continuing.");
450
                
451
            }
452
            
453
            // no local replica, get a replica
454
            if ( object == null ) {
455
                // session should be null to use the default certificate
456
                // location set in the Certificate manager
457
                object = mn.getReplica(thisNodeSession, pid);
458
                logMetacat.info("MNodeService.replicate() called for identifier "
459
                                + pid.getValue());
460

    
461
            }
462

    
463
        } catch (InvalidToken e) {            
464
            String msg = "Could not retrieve object to replicate (InvalidToken): "+ e.getMessage();
465
            failure = new ServiceFailure("2151", msg);
466
            setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, failure);
467
            logMetacat.error(msg);
468
            throw new ServiceFailure("2151", msg);
469

    
470
        } catch (NotFound e) {
471
            String msg = "Could not retrieve object to replicate (NotFound): "+ e.getMessage();
472
            failure = new ServiceFailure("2151", msg);
473
            setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, failure);
474
            logMetacat.error(msg);
475
            throw new ServiceFailure("2151", msg);
476

    
477
        }
478

    
479
        // verify checksum on the object, if supported
480
        if (object.markSupported()) {
481
            Checksum givenChecksum = sysmeta.getChecksum();
482
            Checksum computedChecksum = null;
483
            try {
484
                computedChecksum = ChecksumUtil.checksum(object,
485
                        givenChecksum.getAlgorithm());
486
                object.reset();
487

    
488
            } catch (Exception e) {
489
                String msg = "Error computing checksum on replica: "
490
                        + e.getMessage();
491
                ServiceFailure sf = new ServiceFailure("2151", msg);
492
                sf.initCause(e);
493
                throw sf;
494
            }
495
            if (!givenChecksum.getValue().equals(computedChecksum.getValue())) {
496
                logMetacat.debug("Given    checksum for " + pid.getValue() + 
497
                    "is " + givenChecksum.getValue());
498
                logMetacat.debug("Computed checksum for " + pid.getValue() + 
499
                    "is " + computedChecksum.getValue());
500
                throw new ServiceFailure("2151",
501
                        "Computed checksum does not match declared checksum");
502
            }
503
        }
504

    
505
        // add it to local store
506
        Identifier retPid;
507
        try {
508
            // skip the MN.create -- this mutates the system metadata and we
509
            // dont want it to
510
            if ( localId == null ) {
511
                
512
                retPid = super.create(session, pid, object, sysmeta);
513
                result = (retPid.getValue().equals(pid.getValue()));
514
            }
515
            
516
        } catch (InvalidToken e) {
517
            String msg = "Could not save object to local store (InvalidToken): " + e.getMessage();
518
            failure = new ServiceFailure("2151", msg);
519
            setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, failure);
520
            logMetacat.error(msg);
521
            throw new ServiceFailure("2151", msg);
522
        
523
        } catch (IdentifierNotUnique e) {
524
            String msg = "Could not save object to local store (IdentifierNotUnique): " + e.getMessage();
525
            failure = new ServiceFailure("2151", msg);
526
            setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, failure);
527
            logMetacat.error(msg);
528
            throw new ServiceFailure("2151", msg);
529
        
530
        } catch (InvalidSystemMetadata e) {
531
            String msg = "Could not save object to local store (InvalidSystemMetadata): " + e.getMessage();
532
            failure = new ServiceFailure("2151", msg);
533
            setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.FAILED, failure);
534
            logMetacat.error(msg);
535
            throw new ServiceFailure("2151", msg);
536
            
537
        }
538

    
539
        // finish by setting the replication status
540
        setReplicationStatus(thisNodeSession, pid, nodeId, ReplicationStatus.COMPLETED, null);
541
        return result;
542

    
543
    }
544

    
545
    /**
546
     * Return the object identified by the given object identifier
547
     * 
548
     * @param session - the Session object containing the credentials for the Subject
549
     * @param pid - the object identifier for the given object
550
     * 
551
     * @return inputStream - the input stream of the given object
552
     * 
553
     * @throws InvalidToken
554
     * @throws ServiceFailure
555
     * @throws NotAuthorized
556
     * @throws InvalidRequest
557
     * @throws NotImplemented
558
     */
559
    @Override
560
    public InputStream get(Session session, Identifier pid) 
561
    throws InvalidToken, ServiceFailure, NotAuthorized, NotFound, NotImplemented {
562

    
563
        return super.get(session, pid);
564

    
565
    }
566

    
567
    /**
568
     * Returns a Checksum for the specified object using an accepted hashing algorithm
569
     * 
570
     * @param session - the Session object containing the credentials for the Subject
571
     * @param pid - the object identifier for the given object
572
     * @param algorithm -  the name of an algorithm that will be used to compute 
573
     *                     a checksum of the bytes of the object
574
     * 
575
     * @return checksum - the checksum of the given object
576
     * 
577
     * @throws InvalidToken
578
     * @throws ServiceFailure
579
     * @throws NotAuthorized
580
     * @throws NotFound
581
     * @throws InvalidRequest
582
     * @throws NotImplemented
583
     */
584
    @Override
585
    public Checksum getChecksum(Session session, Identifier pid, String algorithm) 
586
        throws InvalidToken, ServiceFailure, NotAuthorized, NotFound,
587
        InvalidRequest, NotImplemented {
588

    
589
        Checksum checksum = null;
590

    
591
        InputStream inputStream = get(session, pid);
592

    
593
        try {
594
            checksum = ChecksumUtil.checksum(inputStream, algorithm);
595

    
596
        } catch (NoSuchAlgorithmException e) {
597
            throw new ServiceFailure("1410", "The checksum for the object specified by " + pid.getValue() + "could not be returned due to an internal error: "
598
                    + e.getMessage());
599
        } catch (IOException e) {
600
            throw new ServiceFailure("1410", "The checksum for the object specified by " + pid.getValue() + "could not be returned due to an internal error: "
601
                    + e.getMessage());
602
        }
603

    
604
        if (checksum == null) {
605
            throw new ServiceFailure("1410", "The checksum for the object specified by " + pid.getValue() + "could not be returned.");
606
        }
607

    
608
        return checksum;
609
    }
610

    
611
    /**
612
     * Return the system metadata for a given object
613
     * 
614
     * @param session - the Session object containing the credentials for the Subject
615
     * @param pid - the object identifier for the given object
616
     * 
617
     * @return inputStream - the input stream of the given system metadata object
618
     * 
619
     * @throws InvalidToken
620
     * @throws ServiceFailure
621
     * @throws NotAuthorized
622
     * @throws NotFound
623
     * @throws InvalidRequest
624
     * @throws NotImplemented
625
     */
626
    @Override
627
    public SystemMetadata getSystemMetadata(Session session, Identifier pid) 
628
        throws InvalidToken, ServiceFailure, NotAuthorized, NotFound,
629
        NotImplemented {
630

    
631
        return super.getSystemMetadata(session, pid);
632
    }
633

    
634
    /**
635
     * Retrieve the list of objects present on the MN that match the calling parameters
636
     * 
637
     * @param session - the Session object containing the credentials for the Subject
638
     * @param startTime - Specifies the beginning of the time range from which 
639
     *                    to return object (>=)
640
     * @param endTime - Specifies the beginning of the time range from which 
641
     *                  to return object (>=)
642
     * @param objectFormat - Restrict results to the specified object format
643
     * @param replicaStatus - Indicates if replicated objects should be returned in the list
644
     * @param start - The zero-based index of the first value, relative to the 
645
     *                first record of the resultset that matches the parameters.
646
     * @param count - The maximum number of entries that should be returned in 
647
     *                the response. The Member Node may return less entries 
648
     *                than specified in this value.
649
     * 
650
     * @return objectList - the list of objects matching the criteria
651
     * 
652
     * @throws InvalidToken
653
     * @throws ServiceFailure
654
     * @throws NotAuthorized
655
     * @throws InvalidRequest
656
     * @throws NotImplemented
657
     */
658
    @Override
659
    public ObjectList listObjects(Session session, Date startTime, Date endTime, ObjectFormatIdentifier objectFormatId, Boolean replicaStatus, Integer start,
660
            Integer count) throws NotAuthorized, InvalidRequest, NotImplemented, ServiceFailure, InvalidToken {
661

    
662
        ObjectList objectList = null;
663

    
664
        try {
665
            objectList = IdentifierManager.getInstance().querySystemMetadata(startTime, endTime, objectFormatId, replicaStatus, start, count);
666
        } catch (Exception e) {
667
            throw new ServiceFailure("1580", "Error querying system metadata: " + e.getMessage());
668
        }
669

    
670
        return objectList;
671
    }
672

    
673
    /**
674
     * Return a description of the node's capabilities and services.
675
     * 
676
     * @return node - the technical capabilities of the Member Node
677
     * 
678
     * @throws ServiceFailure
679
     * @throws NotAuthorized
680
     * @throws InvalidRequest
681
     * @throws NotImplemented
682
     */
683
    @Override
684
    public Node getCapabilities() 
685
        throws NotImplemented, ServiceFailure {
686

    
687
        String nodeName = null;
688
        String nodeId = null;
689
        String subject = null;
690
        String contactSubject = null;
691
        String nodeDesc = null;
692
        String nodeTypeString = null;
693
        NodeType nodeType = null;
694
        String mnCoreServiceVersion = null;
695
        String mnReadServiceVersion = null;
696
        String mnAuthorizationServiceVersion = null;
697
        String mnStorageServiceVersion = null;
698
        String mnReplicationServiceVersion = null;
699

    
700
        boolean nodeSynchronize = false;
701
        boolean nodeReplicate = false;
702
        boolean mnCoreServiceAvailable = false;
703
        boolean mnReadServiceAvailable = false;
704
        boolean mnAuthorizationServiceAvailable = false;
705
        boolean mnStorageServiceAvailable = false;
706
        boolean mnReplicationServiceAvailable = false;
707

    
708
        try {
709
            // get the properties of the node based on configuration information
710
            nodeName = PropertyService.getProperty("dataone.nodeName");
711
            nodeId = PropertyService.getProperty("dataone.nodeId");
712
            subject = PropertyService.getProperty("dataone.subject");
713
            contactSubject = PropertyService.getProperty("dataone.contactSubject");
714
            nodeDesc = PropertyService.getProperty("dataone.nodeDescription");
715
            nodeTypeString = PropertyService.getProperty("dataone.nodeType");
716
            nodeType = NodeType.convert(nodeTypeString);
717
            nodeSynchronize = new Boolean(PropertyService.getProperty("dataone.nodeSynchronize")).booleanValue();
718
            nodeReplicate = new Boolean(PropertyService.getProperty("dataone.nodeReplicate")).booleanValue();
719

    
720
            mnCoreServiceVersion = PropertyService.getProperty("dataone.mnCore.serviceVersion");
721
            mnReadServiceVersion = PropertyService.getProperty("dataone.mnRead.serviceVersion");
722
            mnAuthorizationServiceVersion = PropertyService.getProperty("dataone.mnAuthorization.serviceVersion");
723
            mnStorageServiceVersion = PropertyService.getProperty("dataone.mnStorage.serviceVersion");
724
            mnReplicationServiceVersion = PropertyService.getProperty("dataone.mnReplication.serviceVersion");
725

    
726
            mnCoreServiceAvailable = new Boolean(PropertyService.getProperty("dataone.mnCore.serviceAvailable")).booleanValue();
727
            mnReadServiceAvailable = new Boolean(PropertyService.getProperty("dataone.mnRead.serviceAvailable")).booleanValue();
728
            mnAuthorizationServiceAvailable = new Boolean(PropertyService.getProperty("dataone.mnAuthorization.serviceAvailable")).booleanValue();
729
            mnStorageServiceAvailable = new Boolean(PropertyService.getProperty("dataone.mnStorage.serviceAvailable")).booleanValue();
730
            mnReplicationServiceAvailable = new Boolean(PropertyService.getProperty("dataone.mnReplication.serviceAvailable")).booleanValue();
731

    
732
            // Set the properties of the node based on configuration information and
733
            // calls to current status methods
734
            String serviceName = SystemUtil.getContextURL() + "/" + PropertyService.getProperty("dataone.serviceName");
735
            Node node = new Node();
736
            node.setBaseURL(serviceName + "/" + nodeTypeString);
737
            node.setDescription(nodeDesc);
738

    
739
            // set the node's health information
740
            node.setState(NodeState.UP);
741
            
742
            // set the ping response to the current value
743
            Ping canPing = new Ping();
744
            canPing.setSuccess(false);
745
            try {
746
            	Date pingDate = ping();
747
                canPing.setSuccess(pingDate != null);
748
            } catch (BaseException e) {
749
                e.printStackTrace();
750
                // guess it can't be pinged
751
            }
752
            
753
            node.setPing(canPing);
754

    
755
            NodeReference identifier = new NodeReference();
756
            identifier.setValue(nodeId);
757
            node.setIdentifier(identifier);
758
            Subject s = new Subject();
759
            s.setValue(subject);
760
            node.addSubject(s);
761
            Subject contact = new Subject();
762
            contact.setValue(contactSubject);
763
            node.addContactSubject(contact);
764
            node.setName(nodeName);
765
            node.setReplicate(nodeReplicate);
766
            node.setSynchronize(nodeSynchronize);
767

    
768
            // services: MNAuthorization, MNCore, MNRead, MNReplication, MNStorage
769
            Services services = new Services();
770

    
771
            Service sMNCore = new Service();
772
            sMNCore.setName("MNCore");
773
            sMNCore.setVersion(mnCoreServiceVersion);
774
            sMNCore.setAvailable(mnCoreServiceAvailable);
775

    
776
            Service sMNRead = new Service();
777
            sMNRead.setName("MNRead");
778
            sMNRead.setVersion(mnReadServiceVersion);
779
            sMNRead.setAvailable(mnReadServiceAvailable);
780

    
781
            Service sMNAuthorization = new Service();
782
            sMNAuthorization.setName("MNAuthorization");
783
            sMNAuthorization.setVersion(mnAuthorizationServiceVersion);
784
            sMNAuthorization.setAvailable(mnAuthorizationServiceAvailable);
785

    
786
            Service sMNStorage = new Service();
787
            sMNStorage.setName("MNStorage");
788
            sMNStorage.setVersion(mnStorageServiceVersion);
789
            sMNStorage.setAvailable(mnStorageServiceAvailable);
790

    
791
            Service sMNReplication = new Service();
792
            sMNReplication.setName("MNReplication");
793
            sMNReplication.setVersion(mnReplicationServiceVersion);
794
            sMNReplication.setAvailable(mnReplicationServiceAvailable);
795

    
796
            services.addService(sMNRead);
797
            services.addService(sMNCore);
798
            services.addService(sMNAuthorization);
799
            services.addService(sMNStorage);
800
            services.addService(sMNReplication);
801
            node.setServices(services);
802

    
803
            // Set the schedule for synchronization
804
            Synchronization synchronization = new Synchronization();
805
            Schedule schedule = new Schedule();
806
            Date now = new Date();
807
            schedule.setYear(PropertyService.getProperty("dataone.nodeSynchronization.schedule.year"));
808
            schedule.setMon(PropertyService.getProperty("dataone.nodeSynchronization.schedule.mon"));
809
            schedule.setMday(PropertyService.getProperty("dataone.nodeSynchronization.schedule.mday"));
810
            schedule.setWday(PropertyService.getProperty("dataone.nodeSynchronization.schedule.wday"));
811
            schedule.setHour(PropertyService.getProperty("dataone.nodeSynchronization.schedule.hour"));
812
            schedule.setMin(PropertyService.getProperty("dataone.nodeSynchronization.schedule.min"));
813
            schedule.setSec(PropertyService.getProperty("dataone.nodeSynchronization.schedule.sec"));
814
            synchronization.setSchedule(schedule);
815
            synchronization.setLastHarvested(now);
816
            synchronization.setLastCompleteHarvest(now);
817
            node.setSynchronization(synchronization);
818

    
819
            node.setType(nodeType);
820
            return node;
821

    
822
        } catch (PropertyNotFoundException pnfe) {
823
            String msg = "MNodeService.getCapabilities(): " + "property not found: " + pnfe.getMessage();
824
            logMetacat.error(msg);
825
            throw new ServiceFailure("2162", msg);
826
        }
827
    }
828

    
829
    /**
830
     * Returns the number of operations that have been serviced by the node 
831
     * over time periods of one and 24 hours.
832
     * 
833
     * @param session - the Session object containing the credentials for the Subject
834
     * @param period - An ISO8601 compatible DateTime range specifying the time 
835
     *                 range for which to return operation statistics.
836
     * @param requestor - Limit to operations performed by given requestor identity.
837
     * @param event -  Enumerated value indicating the type of event being examined
838
     * @param format - Limit to events involving objects of the specified format
839
     * 
840
     * @return the desired log records
841
     * 
842
     * @throws InvalidToken
843
     * @throws ServiceFailure
844
     * @throws NotAuthorized
845
     * @throws InvalidRequest
846
     * @throws NotImplemented
847
     */
848
    public MonitorList getOperationStatistics(Session session, Date startTime, 
849
        Date endTime, Subject requestor, Event event, ObjectFormatIdentifier formatId)
850
        throws NotImplemented, ServiceFailure, NotAuthorized, InsufficientResources, UnsupportedType {
851

    
852
        MonitorList monitorList = new MonitorList();
853

    
854
        try {
855

    
856
            // get log records first
857
            Log logs = getLogRecords(session, startTime, endTime, event, 0, null);
858

    
859
            // TODO: aggregate by day or hour -- needs clarification
860
            int count = 1;
861
            for (LogEntry logEntry : logs.getLogEntryList()) {
862
                Identifier pid = logEntry.getIdentifier();
863
                Date logDate = logEntry.getDateLogged();
864
                // if we are filtering by format
865
                if (formatId != null) {
866
                    SystemMetadata sysmeta = HazelcastService.getInstance().getSystemMetadataMap().get(pid);
867
                    if (!sysmeta.getFormatId().getValue().equals(formatId.getValue())) {
868
                        // does not match
869
                        continue;
870
                    }
871
                }
872
                MonitorInfo item = new MonitorInfo();
873
                item.setCount(count);
874
                item.setDate(new java.sql.Date(logDate.getTime()));
875
                monitorList.addMonitorInfo(item);
876

    
877
            }
878
        } catch (Exception e) {
879
            e.printStackTrace();
880
            throw new ServiceFailure("2081", "Could not retrieve statistics: " + e.getMessage());
881
        }
882

    
883
        return monitorList;
884

    
885
    }
886

    
887
    /**
888
     * A callback method used by a CN to indicate to a MN that it cannot 
889
     * complete synchronization of the science metadata identified by pid.  Log
890
     * the event in the metacat event log.
891
     * 
892
     * @param session
893
     * @param syncFailed
894
     * 
895
     * @throws ServiceFailure
896
     * @throws NotAuthorized
897
     * @throws NotImplemented
898
     */
899
    @Override
900
    public boolean synchronizationFailed(Session session, SynchronizationFailed syncFailed) 
901
        throws NotImplemented, ServiceFailure, NotAuthorized {
902

    
903
        String localId;
904
        Identifier pid;
905
        if ( syncFailed.getPid() != null ) {
906
            pid = new Identifier();
907
            pid.setValue(syncFailed.getPid());
908
            boolean allowed;
909
            
910
            //are we allowed? only CNs
911
            try {
912
                allowed = isAdminAuthorized(session, pid, Permission.READ);
913
                if ( !allowed ){
914
                    throw new NotAuthorized("2162", 
915
                            "Not allowed to call synchronizationFailed() on this node.");
916
                }
917
            } catch (InvalidToken e) {
918
                throw new NotAuthorized("2162", 
919
                        "Not allowed to call synchronizationFailed() on this node.");
920

    
921
            }
922
            
923
        } else {
924
            throw new ServiceFailure("2161", "The identifier cannot be null.");
925

    
926
        }
927
        
928
        try {
929
            localId = IdentifierManager.getInstance().getLocalId(pid.getValue());
930
        } catch (McdbDocNotFoundException e) {
931
            throw new ServiceFailure("2161", "The identifier specified by " + 
932
                    syncFailed.getPid() + " was not found on this node.");
933

    
934
        }
935
        // TODO: update the CN URL below when the CNRead.SynchronizationFailed
936
        // method is changed to include the URL as a parameter
937
        logMetacat.debug("Synchronization for the object identified by " + 
938
                pid.getValue() + " failed from " + syncFailed.getNodeId() + 
939
                " Logging the event to the Metacat EventLog as a 'syncFailed' event.");
940
        // TODO: use the event type enum when the SYNCHRONIZATION_FAILED event is added
941
        String principal = Constants.SUBJECT_PUBLIC;
942
        if (session != null && session.getSubject() != null) {
943
          principal = session.getSubject().getValue();
944
        }
945
        try {
946
          EventLog.getInstance().log(request.getRemoteAddr(), request.getHeader("User-Agent"), principal, localId, "synchronization_failed");
947
        } catch (Exception e) {
948
            throw new ServiceFailure("2161", "Could not log the error for: " + pid.getValue());
949
        }
950
        //EventLog.getInstance().log("CN URL WILL GO HERE", 
951
        //  session.getSubject().getValue(), localId, Event.SYNCHRONIZATION_FAILED);
952
        return true;
953

    
954
    }
955

    
956
    /**
957
     * Essentially a get() but with different logging behavior
958
     */
959
    @Override
960
    public InputStream getReplica(Session session, Identifier pid) 
961
        throws NotAuthorized, NotImplemented, ServiceFailure, InvalidToken {
962

    
963
        logMetacat.info("MNodeService.getReplica() called.");
964

    
965
        // cannot be called by public
966
        if (session == null) {
967
        	throw new InvalidToken("2183", "No session was provided.");
968
        }
969
        
970
        logMetacat.info("MNodeService.getReplica() called with parameters: \n" +
971
             "\tSession.Subject      = " + session.getSubject().getValue() + "\n" +
972
             "\tIdentifier           = " + pid.getValue());
973

    
974
        InputStream inputStream = null; // bytes to be returned
975
        handler = new MetacatHandler(new Timer());
976
        boolean allowed = false;
977
        String localId; // the metacat docid for the pid
978

    
979
        // get the local docid from Metacat
980
        try {
981
            localId = IdentifierManager.getInstance().getLocalId(pid.getValue());
982
        } catch (McdbDocNotFoundException e) {
983
            throw new ServiceFailure("2181", "The object specified by " + 
984
                    pid.getValue() + " does not exist at this node.");
985
            
986
        }
987

    
988
        Subject targetNodeSubject = session.getSubject();
989

    
990
        // check for authorization to replicate, null session to act as this source MN
991
        try {
992
            allowed = D1Client.getCN().isNodeAuthorized(null, targetNodeSubject, pid);
993
        } catch (InvalidToken e1) {
994
            throw new ServiceFailure("2181", "Could not determine if node is authorized: " 
995
                + e1.getMessage());
996
            
997
        } catch (NotFound e1) {
998
            throw new ServiceFailure("2181", "Could not determine if node is authorized: " 
999
                    + e1.getMessage());
1000

    
1001
        } catch (InvalidRequest e1) {
1002
            throw new ServiceFailure("2181", "Could not determine if node is authorized: " 
1003
                    + e1.getMessage());
1004

    
1005
        }
1006

    
1007
        logMetacat.info("Called D1Client.isNodeAuthorized(). Allowed = " + allowed +
1008
            " for identifier " + pid.getValue());
1009

    
1010
        // if the person is authorized, perform the read
1011
        if (allowed) {
1012
            try {
1013
                inputStream = MetacatHandler.read(localId);
1014
            } catch (Exception e) {
1015
                throw new ServiceFailure("1020", "The object specified by " + 
1016
                    pid.getValue() + "could not be returned due to error: " + e.getMessage());
1017
            }
1018
        }
1019

    
1020
        // if we fail to set the input stream
1021
        if (inputStream == null) {
1022
            throw new ServiceFailure("2181", "The object specified by " + 
1023
                pid.getValue() + "does not exist at this node.");
1024
        }
1025

    
1026
        // log the replica event
1027
        String principal = null;
1028
        if (session.getSubject() != null) {
1029
            principal = session.getSubject().getValue();
1030
        }
1031
        EventLog.getInstance().log(request.getRemoteAddr(), 
1032
            request.getHeader("User-Agent"), principal, localId, "replicate");
1033

    
1034
        return inputStream;
1035
    }
1036

    
1037
    /**
1038
     * A method to notify the Member Node that the authoritative copy of 
1039
     * system metadata on the Coordinating Nodes has changed.
1040
     * 
1041
     * @param session   Session information that contains the identity of the 
1042
     *                  calling user as retrieved from the X.509 certificate 
1043
     *                  which must be traceable to the CILogon service.
1044
     * @param serialVersion   The serialVersion of the system metadata
1045
     * @param dateSysMetaLastModified  The time stamp for when the system metadata was changed
1046
     * @throws NotImplemented
1047
     * @throws ServiceFailure
1048
     * @throws NotAuthorized
1049
     * @throws InvalidRequest
1050
     * @throws InvalidToken
1051
     */
1052
    public boolean systemMetadataChanged(Session session, Identifier pid,
1053
        long serialVersion, Date dateSysMetaLastModified) 
1054
        throws NotImplemented, ServiceFailure, NotAuthorized, InvalidRequest,
1055
        InvalidToken {
1056
        
1057
        SystemMetadata currentLocalSysMeta = null;
1058
        SystemMetadata newSysMeta = null;
1059
        CNode cn = D1Client.getCN();
1060
        NodeList nodeList = null;
1061
        Subject callingSubject = null;
1062
        boolean allowed = false;
1063
        
1064
        // are we allowed to call this?
1065
        callingSubject = session.getSubject();
1066
        nodeList = cn.listNodes();
1067
        
1068
        for(Node node : nodeList.getNodeList()) {
1069
            // must be a CN
1070
            if ( node.getType().equals(NodeType.CN)) {
1071
               List<Subject> subjectList = node.getSubjectList();
1072
               // the calling subject must be in the subject list
1073
               if ( subjectList.contains(callingSubject)) {
1074
                   allowed = true;
1075
                   
1076
               }
1077
               
1078
            }
1079
        }
1080
        
1081
        if (!allowed ) {
1082
            String msg = "The subject identified by " + callingSubject.getValue() +
1083
              " is not authorized to call this service.";
1084
            throw new NotAuthorized("1331", msg);
1085
            
1086
        }
1087
        
1088
        // compare what we have locally to what is sent in the change notification
1089
        try {
1090
            currentLocalSysMeta = HazelcastService.getInstance().getSystemMetadataMap().get(pid);
1091
             
1092
        } catch (RuntimeException e) {
1093
            String msg = "SystemMetadata for pid " + pid.getValue() +
1094
              " couldn't be updated because it couldn't be found locally: " +
1095
              e.getMessage();
1096
            logMetacat.error(msg);
1097
            ServiceFailure sf = new ServiceFailure("1333", msg);
1098
            sf.initCause(e);
1099
            throw sf; 
1100
        }
1101
        
1102
        if (currentLocalSysMeta.getSerialVersion().longValue() < serialVersion ) {
1103
            try {
1104
                newSysMeta = cn.getSystemMetadata(null, pid);
1105
            } catch (NotFound e) {
1106
                // huh? you just said you had it
1107
            	String msg = "On updating the local copy of system metadata " + 
1108
                "for pid " + pid.getValue() +", the CN reports it is not found." +
1109
                " The error message was: " + e.getMessage();
1110
                logMetacat.error(msg);
1111
                ServiceFailure sf = new ServiceFailure("1333", msg);
1112
                sf.initCause(e);
1113
                throw sf;
1114
            }
1115
            
1116
            // update the local copy of system metadata for the pid
1117
            try {
1118
                HazelcastService.getInstance().getSystemMetadataMap().put(newSysMeta.getIdentifier(), newSysMeta);
1119
                logMetacat.info("Updated local copy of system metadata for pid " +
1120
                    pid.getValue() + " after change notification from the CN.");
1121
                
1122
            } catch (RuntimeException e) {
1123
                String msg = "SystemMetadata for pid " + pid.getValue() +
1124
                  " couldn't be updated: " +
1125
                  e.getMessage();
1126
                logMetacat.error(msg);
1127
                ServiceFailure sf = new ServiceFailure("1333", msg);
1128
                sf.initCause(e);
1129
                throw sf;
1130
            }
1131
        }
1132
        
1133
        return true;
1134
        
1135
    }
1136
    
1137
    /*
1138
     * Set the replication status for the object on the Coordinating Node
1139
     * 
1140
     * @param session - the session for the this target node
1141
     * @param pid - the identifier of the object being updated
1142
     * @param nodeId - the identifier of this target node
1143
     * @param status - the replication status to set
1144
     * @param failure - the exception to include, if any
1145
     */
1146
    private void setReplicationStatus(Session session, Identifier pid, 
1147
        NodeReference nodeId, ReplicationStatus status, BaseException failure) 
1148
        throws ServiceFailure, NotImplemented, NotAuthorized, 
1149
        InvalidRequest {
1150
        
1151
        // call the CN as the MN to set the replication status
1152
        try {
1153
            this.cn = D1Client.getCN();
1154
            this.cn.setReplicationStatus(session, pid, nodeId,
1155
                    status, failure);
1156
            
1157
        } catch (InvalidToken e) {
1158
            throw new ServiceFailure("2151",
1159
                    "Could not set the replication status on the CN (InvalidToken): " + 
1160
                    e.getMessage());
1161
            
1162
        } catch (NotFound e) {
1163
            throw new ServiceFailure("2151",
1164
                    "Could not set the replication status on the CN (NotFound): " + 
1165
                    e.getMessage());
1166
            
1167
        }
1168

    
1169

    
1170
    }
1171
    
1172
}
(3-3/5)