| 1 |
7190
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leinfelder
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-- use default values initially
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| 2 |
7191
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leinfelder
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CREATE TABLE doi_registration AS
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| 3 |
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| 4 |
7189
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leinfelder
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select
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| 5 |
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text('testing') as ezid_account,
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| 6 |
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doc.doctype,
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| 7 |
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id.guid,
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| 8 |
7193
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leinfelder
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'https://cn-stage.dataone.org/cn/v1/resolve/' || regexp_replace(regexp_replace(id.guid, '/', '%2F', 'g'), ':', '%3A', 'g') as url,
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| 9 |
7190
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leinfelder
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text('Unknown') as title,
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| 10 |
7191
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leinfelder
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text(null) as creator,
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| 11 |
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text(null) as publisher,
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| 12 |
7190
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leinfelder
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to_char(doc.date_created, 'YYYY') as pub_date
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| 13 |
7189
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leinfelder
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from identifier id, xml_documents doc
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| 14 |
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where guid like 'doi%'
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| 15 |
7191
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leinfelder
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and id.docid = doc.docid
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| 16 |
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and id.rev = doc.rev
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| 17 |
7189
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leinfelder
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| 18 |
7191
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leinfelder
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UNION ALL
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| 19 |
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| 20 |
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select
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| 21 |
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text('testing') as ezid_account,
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| 22 |
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doc.doctype,
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| 23 |
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id.guid,
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| 24 |
7193
|
leinfelder
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'https://cn-stage.dataone.org/cn/v1/resolve/' || regexp_replace(regexp_replace(id.guid, '/', '%2F', 'g'), ':', '%3A', 'g') as url,
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| 25 |
7191
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leinfelder
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text('Unknown') as title,
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| 26 |
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text(null) as creator,
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| 27 |
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text(null) as publisher,
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| 28 |
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to_char(doc.date_created, 'YYYY') as pub_date
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| 29 |
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from identifier id, xml_revisions doc
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| 30 |
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where guid like 'doi%'
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| 31 |
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and id.docid = doc.docid
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| 32 |
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and id.rev = doc.rev;
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| 33 |
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| 34 |
7190
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leinfelder
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--update defaults
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| 35 |
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update doi_registration
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| 36 |
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set title = 'Data file'
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| 37 |
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where doctype = 'BIN';
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| 38 |
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| 39 |
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update doi_registration
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| 40 |
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set title = 'Legacy EML file'
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| 41 |
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where doctype like '%eml%2.0.0beta%';
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| 42 |
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| 43 |
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-- update title using node information
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| 44 |
7189
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leinfelder
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update doi_registration doi
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| 45 |
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set title = child.nodedata
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| 46 |
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from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
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| 47 |
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where doi.guid = id.guid
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| 48 |
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and id.docid = docs.docid
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| 49 |
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and id.rev = docs.rev
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| 50 |
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and docs.rootnodeid = nodes.rootnodeid
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| 51 |
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and nodes.nodeid = child.parentnodeid
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| 52 |
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and nodes.parentnodeid = parent.nodeid
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| 53 |
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and nodes.nodename = 'title'
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| 54 |
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and parent.nodename = 'dataset';
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| 55 |
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| 56 |
7191
|
leinfelder
|
-- update pubDate using nodes
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| 57 |
7190
|
leinfelder
|
update doi_registration doi
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| 58 |
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set pub_date = child.nodedata
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| 59 |
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from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
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| 60 |
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where doi.guid = id.guid
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| 61 |
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and id.docid = docs.docid
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| 62 |
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and id.rev = docs.rev
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| 63 |
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and docs.rootnodeid = nodes.rootnodeid
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| 64 |
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and nodes.nodeid = child.parentnodeid
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| 65 |
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and nodes.parentnodeid = parent.nodeid
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| 66 |
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and nodes.nodename = 'pubDate'
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| 67 |
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and parent.nodename = 'dataset';
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| 68 |
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| 69 |
7191
|
leinfelder
|
-- update publisher using nodes
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| 70 |
7190
|
leinfelder
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update doi_registration doi
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| 71 |
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set publisher = child.nodedata
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| 72 |
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from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
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| 73 |
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where doi.guid = id.guid
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| 74 |
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and id.docid = docs.docid
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| 75 |
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and id.rev = docs.rev
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| 76 |
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and docs.rootnodeid = nodes.rootnodeid
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| 77 |
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and nodes.nodeid = child.parentnodeid
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| 78 |
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and nodes.parentnodeid = parent.nodeid
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| 79 |
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and nodes.nodename = 'publisher'
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| 80 |
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and parent.nodename = 'dataset';
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| 81 |
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| 82 |
7191
|
leinfelder
|
-- update organization using nodes
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| 83 |
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update doi_registration doi
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| 84 |
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set creator = child.nodedata
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| 85 |
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from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
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| 86 |
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where doi.guid = id.guid
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| 87 |
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and id.docid = docs.docid
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| 88 |
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and id.rev = docs.rev
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| 89 |
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and docs.rootnodeid = nodes.rootnodeid
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| 90 |
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and nodes.nodeid = child.parentnodeid
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| 91 |
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and nodes.parentnodeid = parent.nodeid
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| 92 |
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and nodes.nodename = 'organizationName'
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| 93 |
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and parent.nodename = 'creator'
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| 94 |
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and nodes.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = parent.nodeid and nodetype = 'ELEMENT');
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| 95 |
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| 96 |
7189
|
leinfelder
|
-- update creator using nodes
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| 97 |
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-- creator/individualName/surName
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| 98 |
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-- creator/individualName/givenName
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| 99 |
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update doi_registration doi
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| 100 |
7191
|
leinfelder
|
set creator = child.nodedata
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| 101 |
7189
|
leinfelder
|
from identifier id,
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| 102 |
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xml_documents docs,
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| 103 |
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xml_nodes nodes,
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| 104 |
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xml_nodes parent,
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| 105 |
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xml_nodes child,
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| 106 |
7191
|
leinfelder
|
xml_nodes grandparent
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| 107 |
7189
|
leinfelder
|
where doi.guid = id.guid
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| 108 |
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and id.docid = docs.docid
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| 109 |
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and id.rev = docs.rev
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| 110 |
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and docs.rootnodeid = nodes.rootnodeid
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| 111 |
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and nodes.nodeid = child.parentnodeid
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| 112 |
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and nodes.parentnodeid = parent.nodeid
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| 113 |
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and parent.parentnodeid = grandparent.nodeid
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| 114 |
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and nodes.nodename = 'surName'
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| 115 |
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and parent.nodename = 'individualName'
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| 116 |
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and grandparent.nodename = 'creator'
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| 117 |
7191
|
leinfelder
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
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| 118 |
7189
|
leinfelder
|
|
| 119 |
7191
|
leinfelder
|
-- add the first name if we have it
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| 120 |
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update doi_registration doi
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| 121 |
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set creator = child.nodedata ||' '|| creator
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| 122 |
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from identifier id,
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| 123 |
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xml_documents docs,
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| 124 |
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xml_nodes nodes,
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| 125 |
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xml_nodes parent,
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| 126 |
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xml_nodes child,
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| 127 |
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xml_nodes grandparent
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| 128 |
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where doi.guid = id.guid
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| 129 |
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and id.docid = docs.docid
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| 130 |
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and id.rev = docs.rev
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| 131 |
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and docs.rootnodeid = nodes.rootnodeid
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| 132 |
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and nodes.nodeid = child.parentnodeid
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| 133 |
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and nodes.parentnodeid = parent.nodeid
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| 134 |
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and parent.parentnodeid = grandparent.nodeid
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| 135 |
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and nodes.nodename = 'givenName'
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| 136 |
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and parent.nodename = 'individualName'
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| 137 |
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and grandparent.nodename = 'creator'
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| 138 |
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and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
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| 139 |
7189
|
leinfelder
|
|
| 140 |
|
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-- update title using revisions
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| 141 |
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update doi_registration doi
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| 142 |
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set title = child.nodedata
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| 143 |
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from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
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| 144 |
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where doi.guid = id.guid
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| 145 |
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and id.docid = docs.docid
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| 146 |
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and id.rev = docs.rev
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| 147 |
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and docs.rootnodeid = nodes.rootnodeid
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| 148 |
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and nodes.nodeid = child.parentnodeid
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| 149 |
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and nodes.parentnodeid = parent.nodeid
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| 150 |
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and nodes.nodename = 'title'
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| 151 |
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and parent.nodename = 'dataset';
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| 152 |
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| 153 |
7190
|
leinfelder
|
-- update pubDate using revisions
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| 154 |
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update doi_registration doi
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| 155 |
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set pub_date = child.nodedata
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| 156 |
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from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
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| 157 |
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where doi.guid = id.guid
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| 158 |
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and id.docid = docs.docid
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| 159 |
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and id.rev = docs.rev
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| 160 |
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and docs.rootnodeid = nodes.rootnodeid
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| 161 |
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and nodes.nodeid = child.parentnodeid
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| 162 |
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and nodes.parentnodeid = parent.nodeid
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| 163 |
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and nodes.nodename = 'pubDate'
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| 164 |
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and parent.nodename = 'dataset';
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| 165 |
7189
|
leinfelder
|
|
| 166 |
7190
|
leinfelder
|
-- update publisher using revisions
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| 167 |
|
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update doi_registration doi
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| 168 |
|
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set publisher = child.nodedata
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| 169 |
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from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
|
| 170 |
|
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where doi.guid = id.guid
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| 171 |
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and id.docid = docs.docid
|
| 172 |
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and id.rev = docs.rev
|
| 173 |
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and docs.rootnodeid = nodes.rootnodeid
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| 174 |
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and nodes.nodeid = child.parentnodeid
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| 175 |
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and nodes.parentnodeid = parent.nodeid
|
| 176 |
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and nodes.nodename = 'publisher'
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| 177 |
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and parent.nodename = 'dataset';
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| 178 |
|
|
|
| 179 |
7191
|
leinfelder
|
-- update organization using nodes
|
| 180 |
|
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update doi_registration doi
|
| 181 |
|
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set creator = child.nodedata
|
| 182 |
|
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from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
|
| 183 |
|
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where doi.guid = id.guid
|
| 184 |
|
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and id.docid = docs.docid
|
| 185 |
|
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and id.rev = docs.rev
|
| 186 |
|
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and docs.rootnodeid = nodes.rootnodeid
|
| 187 |
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and nodes.nodeid = child.parentnodeid
|
| 188 |
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and nodes.parentnodeid = parent.nodeid
|
| 189 |
|
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and nodes.nodename = 'organizationName'
|
| 190 |
|
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and parent.nodename = 'creator'
|
| 191 |
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and nodes.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = parent.nodeid and nodetype = 'ELEMENT');
|
| 192 |
7190
|
leinfelder
|
|
| 193 |
7189
|
leinfelder
|
-- update creator using revisions
|
| 194 |
|
|
update doi_registration doi
|
| 195 |
7191
|
leinfelder
|
set creator = child.nodedata
|
| 196 |
7189
|
leinfelder
|
from identifier id,
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| 197 |
|
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xml_revisions docs,
|
| 198 |
|
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xml_nodes_revisions nodes,
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| 199 |
|
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xml_nodes_revisions parent,
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| 200 |
|
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xml_nodes_revisions child,
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| 201 |
7191
|
leinfelder
|
xml_nodes_revisions grandparent
|
| 202 |
7189
|
leinfelder
|
where doi.guid = id.guid
|
| 203 |
|
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and id.docid = docs.docid
|
| 204 |
|
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and id.rev = docs.rev
|
| 205 |
|
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and docs.rootnodeid = nodes.rootnodeid
|
| 206 |
|
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and nodes.nodeid = child.parentnodeid
|
| 207 |
|
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and nodes.parentnodeid = parent.nodeid
|
| 208 |
|
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and parent.parentnodeid = grandparent.nodeid
|
| 209 |
|
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and nodes.nodename = 'surName'
|
| 210 |
|
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and parent.nodename = 'individualName'
|
| 211 |
|
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and grandparent.nodename = 'creator'
|
| 212 |
7191
|
leinfelder
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
| 213 |
7189
|
leinfelder
|
|
| 214 |
7191
|
leinfelder
|
-- add the first name if we have it
|
| 215 |
|
|
update doi_registration doi
|
| 216 |
|
|
set creator = child.nodedata ||' '|| creator
|
| 217 |
|
|
from identifier id,
|
| 218 |
|
|
xml_revisions docs,
|
| 219 |
|
|
xml_nodes_revisions nodes,
|
| 220 |
|
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xml_nodes_revisions parent,
|
| 221 |
|
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xml_nodes_revisions child,
|
| 222 |
|
|
xml_nodes_revisions grandparent
|
| 223 |
|
|
where doi.guid = id.guid
|
| 224 |
|
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and id.docid = docs.docid
|
| 225 |
|
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and id.rev = docs.rev
|
| 226 |
|
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and docs.rootnodeid = nodes.rootnodeid
|
| 227 |
|
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and nodes.nodeid = child.parentnodeid
|
| 228 |
|
|
and nodes.parentnodeid = parent.nodeid
|
| 229 |
|
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and parent.parentnodeid = grandparent.nodeid
|
| 230 |
|
|
and nodes.nodename = 'givenName'
|
| 231 |
|
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and parent.nodename = 'individualName'
|
| 232 |
|
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and grandparent.nodename = 'creator'
|
| 233 |
|
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and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
| 234 |
|
|
|
| 235 |
|
|
-- use xml_documents for defaults that are still missing
|
| 236 |
|
|
update doi_registration doi
|
| 237 |
|
|
set creator = doc.user_owner
|
| 238 |
|
|
from xml_documents doc, identifier id
|
| 239 |
|
|
where doi.guid = id.guid
|
| 240 |
|
|
and id.docid = doc.docid
|
| 241 |
|
|
and id.rev = doc.rev
|
| 242 |
|
|
and doi.creator is null;
|
| 243 |
|
|
|
| 244 |
|
|
update doi_registration doi
|
| 245 |
|
|
set creator = doc.user_owner
|
| 246 |
|
|
from xml_revisions doc, identifier id
|
| 247 |
|
|
where doi.guid = id.guid
|
| 248 |
|
|
and id.docid = doc.docid
|
| 249 |
|
|
and id.rev = doc.rev
|
| 250 |
|
|
and doi.creator is null;
|
| 251 |
|
|
|
| 252 |
|
|
-- set publisher
|
| 253 |
|
|
update doi_registration
|
| 254 |
|
|
set publisher = creator
|
| 255 |
|
|
where publisher is null or publisher = '';
|
| 256 |
|
|
|
| 257 |
7189
|
leinfelder
|
-- clean up
|
| 258 |
|
|
update doi_registration
|
| 259 |
|
|
set title = replace(title, E'\n', ' ');
|
| 260 |
|
|
|
| 261 |
7190
|
leinfelder
|
update doi_registration
|
| 262 |
7193
|
leinfelder
|
set title = regexp_replace(title, E'\\s+', ' ', 'g');
|
| 263 |
7190
|
leinfelder
|
|
| 264 |
|
|
update doi_registration
|
| 265 |
7193
|
leinfelder
|
set title = regexp_replace(title, E'^\\s+', '', 'g');
|
| 266 |
7190
|
leinfelder
|
|
| 267 |
|
|
COPY (select ezid_account, guid as doi, url, title, creator, publisher, pub_date from doi_registration order by doi)
|
| 268 |
7189
|
leinfelder
|
TO '/tmp/doi_registration.csv'
|
| 269 |
|
|
WITH CSV HEADER;
|
| 270 |
|
|
|
| 271 |
|
|
--drop table doi_registration;
|