Revision 7512
Added by ben leinfelder over 11 years ago
src/edu/ucsb/nceas/metacat/dataone/MNodeService.java | ||
---|---|---|
28 | 28 |
import java.io.InputStream; |
29 | 29 |
import java.math.BigInteger; |
30 | 30 |
import java.security.NoSuchAlgorithmException; |
31 |
import java.text.SimpleDateFormat; |
|
32 | 31 |
import java.util.ArrayList; |
33 | 32 |
import java.util.Calendar; |
34 | 33 |
import java.util.Date; |
35 |
import java.util.HashMap; |
|
36 | 34 |
import java.util.List; |
37 | 35 |
import java.util.Set; |
38 | 36 |
import java.util.Timer; |
... | ... | |
99 | 97 |
import org.dataone.service.util.Constants; |
100 | 98 |
|
101 | 99 |
import edu.ucsb.nceas.ezid.EZIDException; |
102 |
import edu.ucsb.nceas.ezid.EZIDService; |
|
103 |
import edu.ucsb.nceas.ezid.profile.DataCiteProfile; |
|
104 |
import edu.ucsb.nceas.ezid.profile.DataCiteProfileResourceTypeValues; |
|
105 |
import edu.ucsb.nceas.ezid.profile.ErcMissingValueCode; |
|
106 |
import edu.ucsb.nceas.ezid.profile.InternalProfile; |
|
107 |
import edu.ucsb.nceas.ezid.profile.InternalProfileValues; |
|
108 | 100 |
import edu.ucsb.nceas.metacat.DBQuery; |
109 | 101 |
import edu.ucsb.nceas.metacat.EventLog; |
110 | 102 |
import edu.ucsb.nceas.metacat.IdentifierManager; |
... | ... | |
361 | 353 |
|
362 | 354 |
// attempt to register the identifier - it checks if it is a doi |
363 | 355 |
try { |
364 |
registerDOI(sysmeta); |
|
356 |
DOIService.getInstance().registerDOI(sysmeta);
|
|
365 | 357 |
} catch (EZIDException e) { |
366 | 358 |
throw new ServiceFailure("1190", "Could not register DOI: " + e.getMessage()); |
367 | 359 |
} |
... | ... | |
414 | 406 |
|
415 | 407 |
// attempt to register the identifier - it checks if it is a doi |
416 | 408 |
try { |
417 |
registerDOI(sysmeta); |
|
409 |
DOIService.getInstance().registerDOI(sysmeta);
|
|
418 | 410 |
} catch (EZIDException e) { |
419 | 411 |
ServiceFailure sf = new ServiceFailure("1190", "Could not register DOI: " + e.getMessage()); |
420 | 412 |
sf.initCause(e); |
... | ... | |
1253 | 1245 |
UUID uuid = UUID.randomUUID(); |
1254 | 1246 |
identifier.setValue(UUID_PREFIX + uuid.toString()); |
1255 | 1247 |
} else if (scheme.equalsIgnoreCase(DOI_SCHEME)) { |
1256 |
// for DOIs |
|
1257 |
// prepend the doi shoulder to the generated identifier |
|
1258 |
String shoulder = null; |
|
1259 |
String ezidUsername = null; |
|
1260 |
String ezidPassword = null; |
|
1261 |
boolean doiEnabled = false; |
|
1248 |
// generate a DOI |
|
1262 | 1249 |
try { |
1263 |
doiEnabled = new Boolean(PropertyService.getProperty("guid.ezid.enabled")).booleanValue(); |
|
1264 |
shoulder = PropertyService.getProperty("guid.ezid.doishoulder.1"); |
|
1265 |
ezidUsername = PropertyService.getProperty("guid.ezid.username"); |
|
1266 |
ezidPassword = PropertyService.getProperty("guid.ezid.password"); |
|
1267 |
} catch (PropertyNotFoundException e1) { |
|
1268 |
throw new InvalidRequest("2193", "DOI shoulder is not configured at this node."); |
|
1269 |
} |
|
1270 |
|
|
1271 |
// only continue if we have the feature turned on |
|
1272 |
if (!doiEnabled) { |
|
1273 |
throw new InvalidRequest("2193", "DOI scheme is not enabled at this node."); |
|
1274 |
} |
|
1275 |
|
|
1276 |
// add only the minimal metadata required for this DOI |
|
1277 |
HashMap<String, String> metadata = new HashMap<String, String>(); |
|
1278 |
metadata.put(DataCiteProfile.TITLE.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
1279 |
metadata.put(DataCiteProfile.CREATOR.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
1280 |
metadata.put(DataCiteProfile.PUBLISHER.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
1281 |
metadata.put(DataCiteProfile.PUBLICATION_YEAR.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
1282 |
metadata.put(InternalProfile.STATUS.toString(), InternalProfileValues.RESERVED.toString()); |
|
1283 |
metadata.put(InternalProfile.EXPORT.toString(), InternalProfileValues.NO.toString()); |
|
1284 |
|
|
1285 |
try { |
|
1286 |
// call the EZID service |
|
1287 |
String ezidServiceBaseUrl = null; |
|
1288 |
try { |
|
1289 |
ezidServiceBaseUrl = PropertyService.getProperty("guid.ezid.baseurl"); |
|
1290 |
} catch (PropertyNotFoundException e) { |
|
1291 |
logMetacat.warn("Using default EZID baseUrl"); |
|
1292 |
} |
|
1293 |
EZIDService ezid = new EZIDService(ezidServiceBaseUrl); |
|
1294 |
ezid.login(ezidUsername, ezidPassword); |
|
1295 |
String doi = null; |
|
1296 |
// TODO: perhaps we want to use the identifier as given |
|
1297 |
boolean mintDoi = true; |
|
1298 |
if (!mintDoi) { |
|
1299 |
doi = shoulder + identifier.getValue(); |
|
1300 |
identifier.setValue(doi); |
|
1301 |
doi = ezid.createIdentifier(identifier.getValue(), metadata); |
|
1302 |
} else { |
|
1303 |
doi = ezid.mintIdentifier(shoulder, metadata); |
|
1304 |
} |
|
1305 |
identifier.setValue(doi); |
|
1306 |
ezid.logout(); |
|
1250 |
identifier = DOIService.getInstance().generateDOI(); |
|
1307 | 1251 |
} catch (EZIDException e) { |
1308 |
throw new ServiceFailure("2191", "Error registering DOI identifier: " + e.getMessage()); |
|
1252 |
ServiceFailure sf = new ServiceFailure("2191", "Could not generate DOI: " + e.getMessage()); |
|
1253 |
sf.initCause(e); |
|
1254 |
throw sf; |
|
1309 | 1255 |
} |
1310 | 1256 |
} else { |
1311 | 1257 |
// default if we don't know the scheme |
... | ... | |
1519 | 1465 |
} |
1520 | 1466 |
return null; |
1521 | 1467 |
} |
1522 |
|
|
1523 |
/** |
|
1524 |
* submits DOI metadata information about the object to EZID |
|
1525 |
* @param sysMeta |
|
1526 |
* @return |
|
1527 |
* @throws EZIDException |
|
1528 |
* @throws ServiceFailure |
|
1529 |
* @throws NotImplemented |
|
1530 |
*/ |
|
1531 |
private boolean registerDOI(SystemMetadata sysMeta) throws EZIDException, NotImplemented, ServiceFailure { |
|
1532 |
|
|
1533 |
// for DOIs |
|
1534 |
String ezidUsername = null; |
|
1535 |
String ezidPassword = null; |
|
1536 |
String shoulder = null; |
|
1537 |
boolean doiEnabled = false; |
|
1538 |
try { |
|
1539 |
doiEnabled = new Boolean(PropertyService.getProperty("guid.ezid.enabled")).booleanValue(); |
|
1540 |
shoulder = PropertyService.getProperty("guid.ezid.doishoulder.1"); |
|
1541 |
ezidUsername = PropertyService.getProperty("guid.ezid.username"); |
|
1542 |
ezidPassword = PropertyService.getProperty("guid.ezid.password"); |
|
1543 |
} catch (PropertyNotFoundException e) { |
|
1544 |
logMetacat.warn("DOI support is not configured at this node.", e); |
|
1545 |
return false; |
|
1546 |
} |
|
1547 |
|
|
1548 |
// only continue if we have the feature turned on |
|
1549 |
if (doiEnabled) { |
|
1550 |
|
|
1551 |
String identifier = sysMeta.getIdentifier().getValue(); |
|
1552 |
|
|
1553 |
// only continue if this DOI is in our configured shoulder |
|
1554 |
if (identifier.startsWith(shoulder)) { |
|
1555 |
|
|
1556 |
// enter metadata about this identifier |
|
1557 |
HashMap<String, String> metadata = null; |
|
1558 |
|
|
1559 |
// login to EZID service |
|
1560 |
String ezidServiceBaseUrl = null; |
|
1561 |
try { |
|
1562 |
ezidServiceBaseUrl = PropertyService.getProperty("guid.ezid.baseurl"); |
|
1563 |
} catch (PropertyNotFoundException e) { |
|
1564 |
logMetacat.warn("Using default EZID baseUrl"); |
|
1565 |
} |
|
1566 |
EZIDService ezid = new EZIDService(ezidServiceBaseUrl); |
|
1567 |
ezid.login(ezidUsername, ezidPassword); |
|
1568 |
|
|
1569 |
// check for existing metadata |
|
1570 |
boolean create = false; |
|
1571 |
try { |
|
1572 |
metadata = ezid.getMetadata(identifier); |
|
1573 |
} catch (EZIDException e) { |
|
1574 |
// expected much of the time |
|
1575 |
logMetacat.warn("No metadata found for given identifier: " + e.getMessage()); |
|
1576 |
} |
|
1577 |
if (metadata == null) { |
|
1578 |
create = true; |
|
1579 |
} |
|
1580 |
// confuses the API if we send the original metadata that it gave us, so start from scratch |
|
1581 |
metadata = new HashMap<String, String>(); |
|
1582 |
|
|
1583 |
// TODO: set title and creator to better values |
|
1584 |
Node node = getCapabilities(); |
|
1585 |
SimpleDateFormat sdf = new SimpleDateFormat("yyyy"); |
|
1586 |
String year = sdf .format(sysMeta.getDateUploaded()); |
|
1587 |
metadata.put(DataCiteProfile.TITLE.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
1588 |
metadata.put(DataCiteProfile.CREATOR.toString(), sysMeta.getRightsHolder().getValue()); |
|
1589 |
metadata.put(DataCiteProfile.PUBLISHER.toString(), node.getName()); |
|
1590 |
metadata.put(DataCiteProfile.PUBLICATION_YEAR.toString(), year); |
|
1591 |
metadata.put(DataCiteProfile.RESOURCE_TYPE.toString(), DataCiteProfileResourceTypeValues.DATASET.toString() + "/" + sysMeta.getFormatId().getValue()); |
|
1592 |
metadata.put(InternalProfile.TARGET.toString(), node.getBaseURL() + "/v1/object/" + identifier); |
|
1593 |
metadata.put(InternalProfile.STATUS.toString(), InternalProfileValues.PUBLIC.toString()); |
|
1594 |
metadata.put(InternalProfile.EXPORT.toString(), InternalProfileValues.YES.toString()); |
|
1595 |
|
|
1596 |
// set using the API |
|
1597 |
if (create) { |
|
1598 |
ezid.createIdentifier(identifier, metadata); |
|
1599 |
} else { |
|
1600 |
ezid.setMetadata(identifier, metadata); |
|
1601 |
} |
|
1602 |
|
|
1603 |
ezid.logout(); |
|
1604 |
} |
|
1605 |
|
|
1606 |
} |
|
1607 |
|
|
1608 |
return true; |
|
1609 |
} |
|
1610 | 1468 |
|
1611 | 1469 |
} |
src/edu/ucsb/nceas/metacat/dataone/DOIService.java | ||
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1 |
/** |
|
2 |
* '$RCSfile$' |
|
3 |
* Copyright: 2000 Regents of the University of California and the |
|
4 |
* National Center for Ecological Analysis and Synthesis |
|
5 |
* |
|
6 |
* '$Author$' |
|
7 |
* '$Date$' |
|
8 |
* |
|
9 |
* This program is free software; you can redistribute it and/or modify |
|
10 |
* it under the terms of the GNU General Public License as published by |
|
11 |
* the Free Software Foundation; either version 2 of the License, or |
|
12 |
* (at your option) any later version. |
|
13 |
* |
|
14 |
* This program is distributed in the hope that it will be useful, |
|
15 |
* but WITHOUT ANY WARRANTY; without even the implied warranty of |
|
16 |
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
|
17 |
* GNU General Public License for more details. |
|
18 |
* |
|
19 |
* You should have received a copy of the GNU General Public License |
|
20 |
* along with this program; if not, write to the Free Software |
|
21 |
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
|
22 |
*/ |
|
23 |
package edu.ucsb.nceas.metacat.dataone; |
|
24 |
|
|
25 |
import java.text.SimpleDateFormat; |
|
26 |
import java.util.HashMap; |
|
27 |
|
|
28 |
import org.apache.log4j.Logger; |
|
29 |
import org.dataone.service.exceptions.InvalidRequest; |
|
30 |
import org.dataone.service.exceptions.NotImplemented; |
|
31 |
import org.dataone.service.exceptions.ServiceFailure; |
|
32 |
import org.dataone.service.types.v1.Identifier; |
|
33 |
import org.dataone.service.types.v1.Node; |
|
34 |
import org.dataone.service.types.v1.SystemMetadata; |
|
35 |
|
|
36 |
import edu.ucsb.nceas.ezid.EZIDException; |
|
37 |
import edu.ucsb.nceas.ezid.EZIDService; |
|
38 |
import edu.ucsb.nceas.ezid.profile.DataCiteProfile; |
|
39 |
import edu.ucsb.nceas.ezid.profile.DataCiteProfileResourceTypeValues; |
|
40 |
import edu.ucsb.nceas.ezid.profile.ErcMissingValueCode; |
|
41 |
import edu.ucsb.nceas.ezid.profile.InternalProfile; |
|
42 |
import edu.ucsb.nceas.ezid.profile.InternalProfileValues; |
|
43 |
import edu.ucsb.nceas.metacat.properties.PropertyService; |
|
44 |
import edu.ucsb.nceas.utilities.PropertyNotFoundException; |
|
45 |
|
|
46 |
/** |
|
47 |
* |
|
48 |
* Singleton for interacting with the EZID DOI library. |
|
49 |
* Allows DOI minting/initial registration, creating and updating |
|
50 |
* existing DOI registrations. |
|
51 |
* |
|
52 |
* @author leinfelder |
|
53 |
*/ |
|
54 |
public class DOIService { |
|
55 |
|
|
56 |
private Logger logMetacat = Logger.getLogger(DOIService.class); |
|
57 |
|
|
58 |
private static DOIService instance = null; |
|
59 |
|
|
60 |
public static DOIService getInstance() { |
|
61 |
if (instance == null) { |
|
62 |
instance = new DOIService(); |
|
63 |
} |
|
64 |
return instance; |
|
65 |
} |
|
66 |
|
|
67 |
/** |
|
68 |
* Constructor, private for singleton access |
|
69 |
*/ |
|
70 |
private DOIService() { |
|
71 |
|
|
72 |
} |
|
73 |
|
|
74 |
/** |
|
75 |
* submits DOI metadata information about the object to EZID |
|
76 |
* @param sysMeta |
|
77 |
* @return |
|
78 |
* @throws EZIDException |
|
79 |
* @throws ServiceFailure |
|
80 |
* @throws NotImplemented |
|
81 |
*/ |
|
82 |
public boolean registerDOI(SystemMetadata sysMeta) throws EZIDException, NotImplemented, ServiceFailure { |
|
83 |
|
|
84 |
// for DOIs |
|
85 |
String ezidUsername = null; |
|
86 |
String ezidPassword = null; |
|
87 |
String shoulder = null; |
|
88 |
boolean doiEnabled = false; |
|
89 |
try { |
|
90 |
doiEnabled = new Boolean(PropertyService.getProperty("guid.ezid.enabled")).booleanValue(); |
|
91 |
shoulder = PropertyService.getProperty("guid.ezid.doishoulder.1"); |
|
92 |
ezidUsername = PropertyService.getProperty("guid.ezid.username"); |
|
93 |
ezidPassword = PropertyService.getProperty("guid.ezid.password"); |
|
94 |
} catch (PropertyNotFoundException e) { |
|
95 |
logMetacat.warn("DOI support is not configured at this node.", e); |
|
96 |
return false; |
|
97 |
} |
|
98 |
|
|
99 |
// only continue if we have the feature turned on |
|
100 |
if (doiEnabled) { |
|
101 |
|
|
102 |
String identifier = sysMeta.getIdentifier().getValue(); |
|
103 |
|
|
104 |
// only continue if this DOI is in our configured shoulder |
|
105 |
if (identifier.startsWith(shoulder)) { |
|
106 |
|
|
107 |
// enter metadata about this identifier |
|
108 |
HashMap<String, String> metadata = null; |
|
109 |
|
|
110 |
// login to EZID service |
|
111 |
String ezidServiceBaseUrl = null; |
|
112 |
try { |
|
113 |
ezidServiceBaseUrl = PropertyService.getProperty("guid.ezid.baseurl"); |
|
114 |
} catch (PropertyNotFoundException e) { |
|
115 |
logMetacat.warn("Using default EZID baseUrl"); |
|
116 |
} |
|
117 |
EZIDService ezid = new EZIDService(ezidServiceBaseUrl); |
|
118 |
ezid.login(ezidUsername, ezidPassword); |
|
119 |
|
|
120 |
// check for existing metadata |
|
121 |
boolean create = false; |
|
122 |
try { |
|
123 |
metadata = ezid.getMetadata(identifier); |
|
124 |
} catch (EZIDException e) { |
|
125 |
// expected much of the time |
|
126 |
logMetacat.warn("No metadata found for given identifier: " + e.getMessage()); |
|
127 |
} |
|
128 |
if (metadata == null) { |
|
129 |
create = true; |
|
130 |
} |
|
131 |
// confuses the API if we send the original metadata that it gave us, so start from scratch |
|
132 |
metadata = new HashMap<String, String>(); |
|
133 |
|
|
134 |
// TODO: set title and creator to better values |
|
135 |
Node node = MNodeService.getInstance(null).getCapabilities(); |
|
136 |
SimpleDateFormat sdf = new SimpleDateFormat("yyyy"); |
|
137 |
String year = sdf .format(sysMeta.getDateUploaded()); |
|
138 |
metadata.put(DataCiteProfile.TITLE.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
139 |
metadata.put(DataCiteProfile.CREATOR.toString(), sysMeta.getRightsHolder().getValue()); |
|
140 |
metadata.put(DataCiteProfile.PUBLISHER.toString(), node.getName()); |
|
141 |
metadata.put(DataCiteProfile.PUBLICATION_YEAR.toString(), year); |
|
142 |
metadata.put(DataCiteProfile.RESOURCE_TYPE.toString(), DataCiteProfileResourceTypeValues.DATASET.toString() + "/" + sysMeta.getFormatId().getValue()); |
|
143 |
metadata.put(InternalProfile.TARGET.toString(), node.getBaseURL() + "/v1/object/" + identifier); |
|
144 |
metadata.put(InternalProfile.STATUS.toString(), InternalProfileValues.PUBLIC.toString()); |
|
145 |
metadata.put(InternalProfile.EXPORT.toString(), InternalProfileValues.YES.toString()); |
|
146 |
|
|
147 |
// set using the API |
|
148 |
if (create) { |
|
149 |
ezid.createIdentifier(identifier, metadata); |
|
150 |
} else { |
|
151 |
ezid.setMetadata(identifier, metadata); |
|
152 |
} |
|
153 |
|
|
154 |
ezid.logout(); |
|
155 |
} |
|
156 |
|
|
157 |
} |
|
158 |
|
|
159 |
return true; |
|
160 |
} |
|
161 |
|
|
162 |
/** |
|
163 |
* Generate a DOI using the EZID service as configured |
|
164 |
* @return |
|
165 |
* @throws EZIDException |
|
166 |
* @throws InvalidRequest |
|
167 |
*/ |
|
168 |
public Identifier generateDOI() throws EZIDException, InvalidRequest { |
|
169 |
|
|
170 |
Identifier identifier = new Identifier(); |
|
171 |
|
|
172 |
// look up configuration values |
|
173 |
String shoulder = null; |
|
174 |
String ezidUsername = null; |
|
175 |
String ezidPassword = null; |
|
176 |
boolean doiEnabled = false; |
|
177 |
try { |
|
178 |
doiEnabled = new Boolean(PropertyService.getProperty("guid.ezid.enabled")).booleanValue(); |
|
179 |
shoulder = PropertyService.getProperty("guid.ezid.doishoulder.1"); |
|
180 |
ezidUsername = PropertyService.getProperty("guid.ezid.username"); |
|
181 |
ezidPassword = PropertyService.getProperty("guid.ezid.password"); |
|
182 |
} catch (PropertyNotFoundException e1) { |
|
183 |
throw new InvalidRequest("2193", "DOI shoulder is not configured at this node."); |
|
184 |
} |
|
185 |
|
|
186 |
// only continue if we have the feature turned on |
|
187 |
if (!doiEnabled) { |
|
188 |
throw new InvalidRequest("2193", "DOI scheme is not enabled at this node."); |
|
189 |
} |
|
190 |
|
|
191 |
// add only the minimal metadata required for this DOI |
|
192 |
HashMap<String, String> metadata = new HashMap<String, String>(); |
|
193 |
metadata.put(DataCiteProfile.TITLE.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
194 |
metadata.put(DataCiteProfile.CREATOR.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
195 |
metadata.put(DataCiteProfile.PUBLISHER.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
196 |
metadata.put(DataCiteProfile.PUBLICATION_YEAR.toString(), ErcMissingValueCode.UNKNOWN.toString()); |
|
197 |
metadata.put(InternalProfile.STATUS.toString(), InternalProfileValues.RESERVED.toString()); |
|
198 |
metadata.put(InternalProfile.EXPORT.toString(), InternalProfileValues.NO.toString()); |
|
199 |
|
|
200 |
// call the EZID service |
|
201 |
String ezidServiceBaseUrl = null; |
|
202 |
try { |
|
203 |
ezidServiceBaseUrl = PropertyService.getProperty("guid.ezid.baseurl"); |
|
204 |
} catch (PropertyNotFoundException e) { |
|
205 |
logMetacat.warn("Using default EZID baseUrl"); |
|
206 |
} |
|
207 |
EZIDService ezid = new EZIDService(ezidServiceBaseUrl); |
|
208 |
ezid.login(ezidUsername, ezidPassword); |
|
209 |
String doi = ezid.mintIdentifier(shoulder, metadata); |
|
210 |
identifier.setValue(doi); |
|
211 |
ezid.logout(); |
|
212 |
|
|
213 |
return identifier; |
|
214 |
} |
|
215 |
|
|
216 |
|
|
217 |
} |
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refactor DOI registration into separate class. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513