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5371
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berkley
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CREATE TABLE systemMetadata (
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| 2 |
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guid VARCHAR2(2000), -- the globally unique string identifier
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6561
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leinfelder
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serial_version VARCHAR2(256), --the serial version of the object
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| 4 |
5887
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berkley
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date_uploaded DATE, -- the date/time the document was first submitted
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rights_holder VARCHAR2(250), --the user who has rights to the document, usually the first persons to upload it
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checksum VARCHAR2(512), --the checksum of the doc using the given algorithm (see below)
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checksum_algorithm VARCHAR2(250), --the algorithm used to calculate the checksum
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origin_member_node VARCHAR2(250), --the member node where the document was first uploaded
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authoritive_member_node VARCHAR2(250), --the member node that currently controls the document
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date_modified DATE, -- the last date/time that the file was changed
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berkley
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submitter VARCHAR2(256), -- the user who originally submitted the doc
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object_format VARCHAR2(256), --the format of the object
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6136
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leinfelder
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size VARCHAR2(256), --the size of the object
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leinfelder
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archived boolean, -- specifies whether this an archived object
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6136
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leinfelder
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replication_allowed boolean, -- replication allowed
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number_replicas NUMBER(8), -- the number of replicas allowed
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6375
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leinfelder
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obsoletes VARCHAR2(2000), -- the identifier of the record that this replaces
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obsoleted_by VARCHAR2(2000), -- the identifier of the record that replaces this record
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6136
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leinfelder
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CONSTRAINT systemMetadata_pk
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PRIMARY KEY (guid)
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5371
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berkley
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)
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7392
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leinfelder
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CREATE TABLE smReplicationPolicy (
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6136
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leinfelder
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guid VARCHAR2(2000), -- the globally unique string identifier of the object that the system metadata describes
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member_node VARCHAR(250), -- replication member node
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policy VARCHAR2(2000), -- the policy (preferred, blocked, etc...TBD)
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7392
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leinfelder
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CONSTRAINT smReplicationPolicy_fk
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6933
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jones
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FOREIGN KEY (guid) REFERENCES systemMetadata DEFERRABLE
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6136
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leinfelder
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);
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7392
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leinfelder
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CREATE TABLE smReplicationStatus (
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6136
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leinfelder
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guid VARCHAR2(2000), -- the globally unique string identifier of the object that the system metadata describes
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member_node VARCHAR(250), -- replication member node
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status VARCHAR(250), -- replication status
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date_verified DATE, -- the date replication was verified
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| 36 |
7392
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leinfelder
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CONSTRAINT smReplicationStatus_fk
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6933
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jones
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FOREIGN KEY (guid) REFERENCES systemMetadata DEFERRABLE
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6136
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leinfelder
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);
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| 40 |
7387
|
leinfelder
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BEGIN
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EXECUTE IMMEDIATE 'DROP TABLE identifier';
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EXCEPTION
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WHEN OTHERS THEN
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IF SQLCODE != -942 THEN
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RAISE;
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END IF;
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END;
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6583
|
leinfelder
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| 49 |
7387
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leinfelder
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/*
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| 50 |
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* Create the new one (DataONE features)
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| 51 |
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*/
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| 52 |
5276
|
jones
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CREATE TABLE identifier (
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guid VARCHAR2(2000), -- the globally unique string identifier
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| 54 |
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docid VARCHAR2(250), -- the local document id #
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rev NUMBER(8) -- the revision part of the local identifier
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);
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| 58 |
7387
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leinfelder
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/*
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* add the nodedatadate column to the tables that need it
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*/
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| 61 |
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ALTER TABLE xml_nodes ADD (nodedatadate TIMESTAMP);
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ALTER TABLE xml_nodes_revisions ADD (nodedatadate TIMESTAMP);
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| 63 |
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ALTER TABLE xml_path_index ADD (nodedatadate TIMESTAMP);
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CREATE INDEX xml_path_index_idx5 ON xml_path_index (nodedatadate);
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| 66 |
6542
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leinfelder
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/**
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* track the user-agent for the request
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*/
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| 69 |
7387
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leinfelder
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ALTER TABLE access_log ADD (user_agent VARCHAR(512));
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6542
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leinfelder
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| 71 |
6136
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leinfelder
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/*
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6658
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leinfelder
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* Register the new schema
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| 73 |
5400
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jones
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*/
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| 74 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 75 |
7387
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leinfelder
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VALUES ('Schema', '@eml2_1_1namespace@', '/schema/eml-2.1.1/eml.xsd');
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| 76 |
5709
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leinfelder
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| 77 |
6761
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leinfelder
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/**
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* Generate GUIDs for docid.rev
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*/
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| 80 |
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INSERT INTO identifier (docid, rev, guid)
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| 81 |
6952
|
leinfelder
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SELECT docid, rev, docid || '.' || rev FROM xml_documents
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UNION
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| 83 |
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SELECT docid, rev, docid || '.' || rev FROM xml_revisions;
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| 84 |
7387
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leinfelder
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--INSERT 0 156644
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| 85 |
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| 86 |
6923
|
leinfelder
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/**
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| 87 |
7387
|
leinfelder
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* Add guid in xml_access table
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| 88 |
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*/
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| 89 |
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ALTER TABLE xml_access ADD (guid VARCHAR2(2000));
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| 90 |
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/**
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| 91 |
6923
|
leinfelder
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* Expand accessfileid in xml_access table to hold guids
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| 92 |
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*/
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| 93 |
7387
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leinfelder
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ALTER TABLE xml_access MODIFY (accessfileid VARCHAR2(2000));
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| 94 |
6761
|
leinfelder
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| 95 |
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/**
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| 96 |
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* Upgrade xml_access records to use GUID from identifier table
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* NOTE: This duplicates existing access rules for every revision of a document
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| 98 |
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*/
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| 99 |
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INSERT INTO xml_access (
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guid, principal_name, permission, perm_type, perm_order,
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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| 102 |
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)
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| 103 |
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SELECT
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| 104 |
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id.guid, xa.principal_name, xa.permission, xa.perm_type, xa.perm_order,
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| 105 |
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xa.docid, xa.accessfileid, xa.begin_time, xa.end_time, xa.ticket_count, xa.subtreeid, xa.startnodeid, xa.endnodeid
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| 106 |
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FROM identifier id, xml_access xa
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WHERE id.docid = xa.docid;
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| 108 |
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| 109 |
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/**
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| 110 |
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* Include inline data access rows -- they have a special guid: 'scope.docid.rev.index'
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| 111 |
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*/
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| 112 |
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INSERT INTO xml_access (
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| 113 |
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guid, principal_name, permission, perm_type, perm_order,
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| 114 |
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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| 115 |
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)
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| 116 |
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SELECT
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| 117 |
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docid, principal_name, permission, perm_type, perm_order,
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| 118 |
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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| 119 |
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FROM xml_access
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| 120 |
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WHERE docid like '%.%.%.%';
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| 121 |
7387
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leinfelder
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--INSERT 0 18
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| 122 |
6761
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leinfelder
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| 123 |
7387
|
leinfelder
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| 124 |
6761
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leinfelder
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/**
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| 125 |
7387
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leinfelder
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* Update the accessfileid to use their guid
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| 126 |
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* NOTE: uses the last revision's guid as the new value for accessfileid
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| 127 |
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* uses a temporary table
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| 128 |
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**/
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| 129 |
6947
|
leinfelder
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CREATE TABLE max_identifier (guid VARCHAR2(2000), docid VARCHAR2(250), rev NUMBER(8));
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| 130 |
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| 131 |
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/** insert the max rev identifier for each document **/
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| 132 |
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INSERT INTO max_identifier (docid, rev, guid)
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| 133 |
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SELECT docid, MAX(rev), docid || '.' || MAX(rev)
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| 134 |
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FROM identifier
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| 135 |
6949
|
leinfelder
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GROUP BY docid;
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| 136 |
7387
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leinfelder
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--INSERT 0 57841
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| 137 |
6947
|
leinfelder
|
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| 138 |
6952
|
leinfelder
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/** create some indexes to speed up the join **/
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| 139 |
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CREATE INDEX maxid_docid_index ON max_identifier (docid);
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| 140 |
7387
|
leinfelder
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CREATE INDEX maxid_guid_index ON max_identifier (guid);
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| 141 |
6952
|
leinfelder
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CREATE INDEX accessfileid_index on xml_access (accessfileid);
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| 142 |
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CREATE INDEX xml_access_guid_index on xml_access (guid);
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| 143 |
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| 144 |
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UPDATE xml_access xa
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| 145 |
7388
|
leinfelder
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SET accessfileid = (SELECT maxid.guid
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| 146 |
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FROM max_identifier maxid
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| 147 |
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WHERE xa.accessfileid = maxid.docid
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| 148 |
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AND xa.guid IS NOT null);
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| 149 |
7387
|
leinfelder
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--UPDATE 310427
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| 150 |
6761
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leinfelder
|
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| 151 |
6952
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leinfelder
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DROP INDEX maxid_docid_index;
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| 152 |
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DROP INDEX maxid_guid_index;
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| 153 |
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DROP INDEX accessfileid_index;
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| 154 |
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DROP INDEX xml_access_guid_index;
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| 155 |
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| 156 |
6947
|
leinfelder
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DROP TABLE max_identifier;
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| 157 |
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| 158 |
6761
|
leinfelder
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/**
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| 159 |
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* Remove old access rules
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| 160 |
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*/
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| 161 |
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DELETE FROM xml_access WHERE guid is null;
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| 162 |
7387
|
leinfelder
|
--DELETE 105432
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| 163 |
6761
|
leinfelder
|
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| 164 |
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/**
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| 165 |
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* clean up the xml_access table
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| 166 |
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*/
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| 167 |
7387
|
leinfelder
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ALTER TABLE xml_access DROP (docid);
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| 168 |
6761
|
leinfelder
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| 169 |
7387
|
leinfelder
|
|
| 170 |
7053
|
leinfelder
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/**
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| 171 |
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* expand xml_path_index 'path' column to hold larger strings
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| 172 |
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*/
|
| 173 |
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ALTER TABLE xml_path_index MODIFY ( path VARCHAR2(4000) );
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| 174 |
6761
|
leinfelder
|
|
| 175 |
7194
|
leinfelder
|
/**
|
| 176 |
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* include 2.0.0beta4 DTD
|
| 177 |
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*/
|
| 178 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 179 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-access-@eml-beta4-version@//EN',
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| 180 |
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'/dtd/eml-access-@eml-beta4-version@.dtd');
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| 181 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 182 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-attribute-@eml-beta4-version@//EN',
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| 183 |
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'/dtd/eml-attribute-@eml-beta4-version@.dtd');
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| 184 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 185 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-constraint-@eml-beta4-version@//EN',
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| 186 |
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'/dtd/eml-constraint-@eml-beta4-version@.dtd');
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| 187 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 188 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-coverage-@eml-beta4-version@//EN',
|
| 189 |
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'/dtd/eml-coverage-@eml-beta4-version@.dtd');
|
| 190 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 191 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-dataset-@eml-beta4-version@//EN',
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| 192 |
|
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'/dtd/eml-dataset-@eml-beta4-version@.dtd');
|
| 193 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 194 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-entity-@eml-beta4-version@//EN',
|
| 195 |
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'/dtd/eml-entity-@eml-beta4-version@.dtd');
|
| 196 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 197 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-literature-@eml-beta4-version@//EN',
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| 198 |
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'/dtd/eml-literature-@eml-beta4-version@.dtd');
|
| 199 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 200 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-physical-@eml-beta4-version@//EN',
|
| 201 |
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'/dtd/eml-physical-@eml-beta4-version@.dtd');
|
| 202 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 203 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-project-@eml-beta4-version@//EN',
|
| 204 |
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'/dtd/eml-project-@eml-beta4-version@.dtd');
|
| 205 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 206 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-protocol-@eml-beta4-version@//EN',
|
| 207 |
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'/dtd/eml-protocol-@eml-beta4-version@.dtd');
|
| 208 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 209 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-software-@eml-beta4-version@//EN',
|
| 210 |
|
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'/dtd/eml-software-@eml-beta4-version@.dtd');
|
| 211 |
|
|
|
| 212 |
6761
|
leinfelder
|
/*
|
| 213 |
5276
|
jones
|
* update the database version
|
| 214 |
|
|
*/
|
| 215 |
|
|
UPDATE db_version SET status=0;
|
| 216 |
|
|
|
| 217 |
|
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INSERT INTO db_version (version, status, date_created)
|
| 218 |
6550
|
leinfelder
|
VALUES ('2.0.0', 1, CURRENT_DATE);
|