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package edu.ucsb.nceas.metacat.dataone;
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/**
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* '$RCSfile$'
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* Purpose: A Class for upgrading the database to version 1.5
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* Copyright: 2000 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* Authors: Peter Slaughter
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*
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* '$Author: leinfelder $'
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* '$Date: 2014-02-10 11:52:33 -0800 (Mon, 10 Feb 2014) $'
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* '$Revision: 8585 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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import java.math.BigInteger;
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import java.sql.SQLException;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import org.apache.log4j.Logger;
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import org.dataone.client.CNode;
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import org.dataone.client.D1Client;
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import org.dataone.service.exceptions.InvalidRequest;
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import org.dataone.service.exceptions.InvalidToken;
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import org.dataone.service.exceptions.NotAuthorized;
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import org.dataone.service.exceptions.NotFound;
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import org.dataone.service.exceptions.NotImplemented;
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import org.dataone.service.exceptions.ServiceFailure;
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import org.dataone.service.exceptions.VersionMismatch;
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import org.dataone.service.types.v1.AccessPolicy;
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import org.dataone.service.types.v1.Identifier;
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import org.dataone.service.types.v1.ObjectFormatIdentifier;
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import org.dataone.service.types.v1.ObjectInfo;
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import org.dataone.service.types.v1.ObjectList;
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import org.dataone.service.types.v1.Permission;
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import org.dataone.service.types.v1.Session;
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import org.dataone.service.types.v1.Subject;
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import org.dataone.service.types.v1.SystemMetadata;
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import edu.ucsb.nceas.metacat.AccessionNumberException;
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import edu.ucsb.nceas.metacat.IdentifierManager;
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import edu.ucsb.nceas.metacat.McdbDocNotFoundException;
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import edu.ucsb.nceas.metacat.accesscontrol.AccessControlException;
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import edu.ucsb.nceas.metacat.properties.PropertyService;
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import edu.ucsb.nceas.metacat.shared.ServiceException;
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import edu.ucsb.nceas.utilities.PropertyNotFoundException;
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import edu.ucsb.nceas.utilities.SortedProperties;
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public class SyncAccessPolicy {
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private static Logger logMetacat = Logger.getLogger(SyncAccessPolicy.class);
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/**
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* Synchronize access policy (from system metadata) of d1 member node with
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* the corresponding controlling node.
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*
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* @param objList
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* list of d1 objects to be synced
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* @return syncedIds a list of pids that were synced with the CN
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* @throws ServiceFailure
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* @throws InvalidToken
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* @throws NotAuthorized
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* @throws NotFound
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* @throws NotImplemented
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* @throws McdbDocNotFoundException
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* @throws InvalidRequest
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* @throws VersionMismatch
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* @throws SQLException
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* @throws AccessionNumberException
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* @throws NumberFormatException
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*/
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private List<Identifier> sync(ObjectList objList) throws ServiceFailure,
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InvalidToken, NotAuthorized, NotFound, NotImplemented,
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McdbDocNotFoundException, InvalidRequest, VersionMismatch,
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NumberFormatException, AccessionNumberException, SQLException, Exception {
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AccessPolicy cnAccessPolicy = null;
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AccessPolicy mnAccessPolicy = null;
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Identifier pid = new Identifier();
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ObjectInfo objInfo = null;
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Session session = null;
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List<Identifier> syncedIds = new ArrayList<Identifier>();
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SystemMetadata cnSysMeta = null;
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SystemMetadata mnSysMeta = null;
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CNode cn = null;
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try {
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cn = D1Client.getCN();
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} catch (ServiceFailure sf) {
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logMetacat.error("Unable to get Coordinating node name for this MN");
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throw new AccessControlException ("Unable to get Coordinating node name for this MN");
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}
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for (int i = objList.getStart(); i < objList.getCount(); i++) {
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objInfo = objList.getObjectInfo(i);
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pid = objInfo.getIdentifier();
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logMetacat.debug("Getting SM for pid: " + pid.getValue() + " i: " + i);
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try {
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// Get sm, access policy for requested localId
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mnSysMeta = IdentifierManager.getInstance().getSystemMetadata(
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pid.getValue());
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} catch (McdbDocNotFoundException e) {
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logMetacat.error("Error syncing access policy of pid: "
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+ pid.getValue() + " pid not found: " + e.getMessage());
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continue;
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} catch (Exception e) {
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logMetacat.error("Error syncing access policy of pid: "
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+ pid.getValue() + ". Message: " + e.getMessage());
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continue;
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}
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logMetacat.debug("Getting access policy for pid: " + pid.getValue());
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mnAccessPolicy = mnSysMeta.getAccessPolicy();
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// Get sm, access policy for requested pid from the CN
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try {
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cnSysMeta = cn.getSystemMetadata(pid);
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} catch (Exception e) {
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logMetacat.error("Error getting system metadata for pid: "
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+ pid.getValue() + " from cn: " + e.getMessage());
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continue;
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}
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logMetacat.debug("Getting access policy from CN for pid: "
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+ pid.getValue());
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cnAccessPolicy = cnSysMeta.getAccessPolicy();
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logMetacat.debug("Diffing access policies (MN,CN) for pid: "
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+ pid.getValue());
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// Compare access policies of MN and CN, and update if different.
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if (!isEqual(mnAccessPolicy, cnAccessPolicy)) {
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try {
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BigInteger serialVersion = cnSysMeta.getSerialVersion();
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logMetacat.debug("Requesting CN to set access policy for pid: "
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+ pid.getValue() + ", serial version: "
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+ serialVersion.toString());
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cn.setAccessPolicy(session, pid, mnAccessPolicy,
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serialVersion.longValue());
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logMetacat.debug("Successfully set access policy");
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// Add this pid to the list of pids that were successfully
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// synced
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syncedIds.add(pid);
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} catch (NotAuthorized na) {
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logMetacat
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.error("Error syncing CN with access policy of pid: "
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+ pid.getValue()
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+ " user not authorized: "
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+ na.getMessage());
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//throw na;
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continue;
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} catch (ServiceFailure sf) {
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logMetacat
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.error("Error syncing CN with access policy of pid: "
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+ pid.getValue()
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+ " Service failure: "
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+ sf.getMessage());
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//throw sf;
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continue;
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} catch (Exception e) {
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logMetacat
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.error("Error syncing CN with access policy of pid: "
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+ pid.getValue() + e.getMessage());
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//throw e;
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continue;
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}
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} else {
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logMetacat.warn("Skipping pid: " + pid.getValue());
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}
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logMetacat.debug("Done syncing access policy for pid: " + pid.getValue());
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}
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return syncedIds;
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}
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/**
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* Convenience function that accepts a list of guids to sync
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*
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* @param guidsToSync
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* list of guids to have access policy synced for
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* @return syncedPids - list of pids that were actually synced with the CN
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* @throws NumberFormatException
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* @throws ServiceFailure
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* @throws InvalidToken
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* @throws NotAuthorized
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* @throws NotFound
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* @throws NotImplemented
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* @throws McdbDocNotFoundException
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* @throws InvalidRequest
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* @throws VersionMismatch
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* @throws AccessionNumberException
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* @throws SQLException
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*/
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public List<Identifier> sync(List<String> guidsToSync)
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throws NumberFormatException, ServiceFailure, InvalidToken,
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NotAuthorized, NotFound, NotImplemented, McdbDocNotFoundException,
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InvalidRequest, VersionMismatch, AccessionNumberException,
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SQLException, Exception {
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List<Identifier> syncedPids = null;
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ObjectList objList = new ObjectList();
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SystemMetadata sm = new SystemMetadata();
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int start = 0;
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int count = 0; //guidsToSync.size();
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objList.setStart(start);
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// Convert the guids to d1 objects, as this is what
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// IdentifierManager.getInstance().querySystemMetadata returns in
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// syncAll, and
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// what sync(ObjectList...) expects
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for (String guid : guidsToSync) {
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try {
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sm = IdentifierManager.getInstance().getSystemMetadata(guid);
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count++;
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} catch (Exception e) {
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logMetacat.error("Error syncing access policy of pid: " + guid
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+ ". Message: " + e.getMessage());
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continue;
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}
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ObjectInfo oi = new ObjectInfo();
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Identifier id = new Identifier();
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id.setValue(guid);
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oi.setIdentifier(id);
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oi.setDateSysMetadataModified(sm.getDateSysMetadataModified());
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oi.setChecksum(sm.getChecksum());
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oi.setFormatId(sm.getFormatId());
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oi.setSize(sm.getSize());
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objList.addObjectInfo(oi);
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}
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int total = count;
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objList.setCount(count);
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objList.setTotal(total);
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syncedPids = sync(objList);
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return syncedPids;
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}
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public List<Identifier> syncAll() throws ServiceFailure, InvalidToken,
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NotAuthorized, NotFound, NotImplemented, McdbDocNotFoundException,
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InvalidRequest, VersionMismatch, NumberFormatException,
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AccessionNumberException, SQLException, PropertyNotFoundException,
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ServiceException, Exception {
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// For the following query parameters - null indicates that the query
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// will not be
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// constrained by the parameter.
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Date startTime = null;
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Date endTime = null;
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ObjectFormatIdentifier objectFormatId = null;
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Boolean replicaStatus = false; // return only pids for which this mn is
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// authoritative
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Integer start = 0;
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Integer count = Integer.valueOf(PropertyService.getProperty("database.webResultsetSize"));
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ObjectList objsToSync = IdentifierManager.getInstance()
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.querySystemMetadata(startTime, endTime, objectFormatId,
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replicaStatus, start, count);
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List<Identifier> syncedIds = sync(objsToSync);
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return syncedIds;
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}
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/**
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* Compare two d1 system metadata access policies for equivalence.
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*
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* @param ap1
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* - first access policy in the comparison
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* @param ap2
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* - second access policy in the comparison
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* @return boolean - true if access policies are equivalent
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*/
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private boolean isEqual(AccessPolicy ap1, AccessPolicy ap2) {
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// Access Policy -> Access Rule -> (Subject, Permission)
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// i.e. Subject="slaughter", Permission="read,write,changePermission"
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// Get the list of access rules for each access policy
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List<org.dataone.service.types.v1.AccessRule> allowList1 = ap1
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.getAllowList();
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List<org.dataone.service.types.v1.AccessRule> allowList2 = ap2
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.getAllowList();
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HashMap<Subject, Set<Permission>> userPerms1 = new HashMap<Subject, Set<Permission>>();
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HashMap<Subject, Set<Permission>> userPerms2 = new HashMap<Subject, Set<Permission>>();
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// Load the permissions from the access rules into a hash of sets, i.e.,
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// so that we end up with this:
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// hash key: set of permissions, i.e.
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// ----------------------------
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// user1: read, write
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// user2: read
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// user3: read, write, change permissions
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// With the permissions in this structure, they can be easily compared
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Set<Permission> perms = null;
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// Process first access policy
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// Loop through access rules of this allowList
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for (org.dataone.service.types.v1.AccessRule accessRule : allowList1) {
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for (Subject s : accessRule.getSubjectList()) {
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if (userPerms1.containsKey(s)) {
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perms = userPerms1.get(s);
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} else {
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perms = new HashSet<Permission>();
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}
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for (Permission p : accessRule.getPermissionList()) {
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perms.add(p);
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}
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userPerms1.put(s, perms);
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}
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}
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// Process second access policy
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for (org.dataone.service.types.v1.AccessRule accessRule : allowList2) {
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for (Subject s : accessRule.getSubjectList()) {
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if (userPerms2.containsKey(s)) {
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perms = userPerms2.get(s);
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} else {
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perms = new HashSet<Permission>();
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}
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for (Permission p : accessRule.getPermissionList()) {
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perms.add(p);
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}
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userPerms2.put(s, perms);
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}
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}
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// Check if the number of access rules is the same for mn and cn. If not
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// then consider them not equal, without performing diff of each access rule.
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if (userPerms1.entrySet().size() != userPerms2.entrySet().size())
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return false;
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// Now perform the comparison of each access rule of access policy 1 to ap 2.
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// This test assumes that the mn perms are more complete than the cn perms.
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logMetacat.debug("Performing comparison of access policies");
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for (Map.Entry<Subject, Set<Permission>> entry : userPerms1.entrySet()) {
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// User name
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Subject s1 = entry.getKey();
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// Perms that the user holds
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Set<Permission> p1 = entry.getValue();
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logMetacat.debug("Checking access policy of user: " + s1.getValue());
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// Does this user exist in both access policies?
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if (userPerms2.containsKey(s1)) {
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if (!p1.equals(userPerms2.get(s1))) {
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logMetacat.debug("User access policies not equal");
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return false;
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}
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} else {
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logMetacat.debug("User access policy not found on CN");
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return false;
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}
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}
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// All comparisons have been passed, so the two access policies are
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// equivalent
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logMetacat.debug("Access policies are the same");
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return true;
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}
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383
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|
384
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/**
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* Run pid synch script on the given pids
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* Each argument is an individual pid
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* because pids cannot contain whitespace.
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* @param args
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* @throws Exception
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*/
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public static void main(String[] args) throws Exception {
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392
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// set up the properties based on the test/deployed configuration of the
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// workspace
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SortedProperties testProperties = new SortedProperties("test/test.properties");
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testProperties.load();
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String metacatContextDir = testProperties.getProperty("metacat.contextDir");
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PropertyService.getInstance(metacatContextDir + "/WEB-INF");
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399
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ArrayList<String> guids = null;
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SyncAccessPolicy syncAP = new SyncAccessPolicy();
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402
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403
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if (args.length > 0) {
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try {
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guids = new ArrayList<String>(Arrays.asList(args));
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logMetacat.warn("Trying to syncing access policy for " + args.length + " pids");
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List<Identifier> synchedPids = syncAP.sync(guids);
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logMetacat.warn("Sunk access policies for " + synchedPids.size() + " pids");
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} catch (Exception e) {
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logMetacat.error("Error syncing pids, message: " + e.getMessage(), e);
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411
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System.exit(1);
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412
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}
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413
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}
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414
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}
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415
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}
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