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8565
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leinfelder
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/**
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* Restore archived documents
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*/
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8574
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leinfelder
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/*
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8576
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leinfelder
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* Gather most recent docids that:
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8606
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leinfelder
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* have access_log event='delete' by the CN
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* are obsoleted by a newer version
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8576
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leinfelder
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* Then we know the current version should be restored
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*/
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/* Find the most recent version by traversing system metadata
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* see: http://www.postgresql.org/docs/8.4/static/queries-with.html
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*/
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DROP TABLE IF EXISTS current_documents;
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WITH RECURSIVE q AS
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(
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SELECT id.guid, sm.obsoleted_by
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FROM access_log al, identifier id, systemmetadata sm
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WHERE al.event = 'delete'
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AND al.date_logged >= '20140101'
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AND al.principal LIKE '%urn:node:CN%'
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AND al.docid = id.docid || '.' || id.rev
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AND id.guid = sm.guid
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AND sm.obsoleted_by IS NOT null
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UNION ALL
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8581
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leinfelder
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SELECT newer.guid, newer.obsoleted_by
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FROM systemMetadata newer
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JOIN q
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ON q.obsoleted_by = newer.guid
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8576
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leinfelder
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)
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SELECT guid, obsoleted_by
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INTO current_documents
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FROM q
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WHERE obsoleted_by is null
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ORDER BY guid;
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/**
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* Gather the details of the documents to restore
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*/
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DROP TABLE IF EXISTS restore_documents;
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8565
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leinfelder
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CREATE TABLE restore_documents (
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docid VARCHAR(250),
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rev INT8,
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rootnodeid INT8,
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guid text
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);
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INSERT INTO restore_documents (
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docid,
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rev,
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rootnodeid,
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guid
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)
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SELECT
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x.docid,
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x.rev,
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x.rootnodeid,
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id.guid
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8576
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leinfelder
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FROM current_documents cd,
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8565
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leinfelder
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xml_revisions x,
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8576
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leinfelder
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identifier id
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8565
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leinfelder
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WHERE x.docid = id.docid
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AND x.rev = id.rev
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8576
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leinfelder
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AND id.guid = cd.guid;
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8565
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leinfelder
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8606
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leinfelder
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/* look at them */
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8604
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leinfelder
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/*
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8576
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leinfelder
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SELECT *
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FROM restore_documents;
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8604
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leinfelder
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*/
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8574
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leinfelder
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8606
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leinfelder
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/* STOP HERE WHEN TESTING */
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8576
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leinfelder
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8577
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leinfelder
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/* Move xml_nodes_revisions back into xml_nodes for the affected docids
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*/
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INSERT INTO xml_nodes
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(nodeid, nodeindex, nodetype, nodename, nodeprefix,
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nodedata, parentnodeid, rootnodeid, docid, date_created,
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date_updated, nodedatanumerical, nodedatadate)
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SELECT
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nodeid, nodeindex, nodetype, nodename, nodeprefix,
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nodedata, parentnodeid, x.rootnodeid, x.docid, date_created,
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date_updated, nodedatanumerical, nodedatadate
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FROM xml_nodes_revisions x, restore_documents rd
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WHERE x.rootnodeid = rd.rootnodeid;
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8565
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leinfelder
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/* Move xml_revisions back into xml_documents for the affected docids
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*/
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INSERT INTO xml_documents
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(docid, rootnodeid, docname, doctype,
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user_owner, user_updated, date_created, date_updated,
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server_location, rev, public_access, catalog_id)
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SELECT
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8577
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leinfelder
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x.docid, x.rootnodeid, docname, doctype,
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8565
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leinfelder
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user_owner, user_updated , date_created, date_updated,
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8577
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leinfelder
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server_location, x.rev, public_access, catalog_id
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8565
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leinfelder
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FROM xml_revisions x, restore_documents rd
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WHERE x.rootnodeid = rd.rootnodeid;
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8577
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leinfelder
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/* Remove the records from revisions
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* Order matters here because of foreign key constraints
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8565
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leinfelder
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*/
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8577
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leinfelder
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DELETE FROM xml_revisions x
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USING restore_documents rd
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8565
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leinfelder
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WHERE x.rootnodeid = rd.rootnodeid;
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8577
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leinfelder
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DELETE FROM xml_nodes_revisions x
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USING restore_documents rd
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WHERE x.rootnodeid = rd.rootnodeid;
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8578
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leinfelder
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/* Ensure ALL previous revisions of docids
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* that have been obsoleted_by something else
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8574
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leinfelder
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* do not also have archived=true flag set
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8565
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leinfelder
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* (Avoids encountering this issue again)
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*/
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8578
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leinfelder
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8604
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leinfelder
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/* Check the numbers in xml_revisions
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8578
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leinfelder
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*/
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8604
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leinfelder
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/*
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8578
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leinfelder
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SELECT count(id.guid)
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FROM xml_revisions x,
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identifier id,
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systemMetadata sm
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WHERE x.docid = id.docid
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AND x.rev = id.rev
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AND id.guid = sm.guid
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AND sm.obsoleted_by IS NOT null
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8601
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leinfelder
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AND sm.archived = 'true';
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8604
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leinfelder
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*/
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8578
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leinfelder
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8601
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leinfelder
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/*Do the update on xml_revisions
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8578
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leinfelder
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*/
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8565
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leinfelder
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UPDATE systemMetadata sm
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8606
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leinfelder
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SET archived = false
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8578
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leinfelder
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FROM xml_revisions x,
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8574
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leinfelder
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identifier id
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WHERE x.docid = id.docid
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8578
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leinfelder
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AND x.rev = id.rev
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8574
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leinfelder
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AND id.guid = sm.guid
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8578
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leinfelder
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AND sm.obsoleted_by IS NOT null
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8601
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leinfelder
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AND sm.archived = 'true';
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| 142 |
8565
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leinfelder
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| 143 |
8601
|
leinfelder
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/**
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* Check numbers in xml_documents
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*/
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| 146 |
8604
|
leinfelder
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/*
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8601
|
leinfelder
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SELECT count(id.guid)
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FROM xml_documents x,
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identifier id,
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systemMetadata sm
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WHERE x.docid = id.docid
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AND x.rev = id.rev
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AND id.guid = sm.guid
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AND sm.obsoleted_by IS NOT null
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AND sm.archived = 'true';
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8604
|
leinfelder
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*/
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| 157 |
8601
|
leinfelder
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/*Do the update on xml_documents
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*/
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UPDATE systemMetadata sm
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8606
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leinfelder
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SET archived = false
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8601
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leinfelder
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FROM xml_documents x,
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identifier id
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WHERE x.docid = id.docid
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AND x.rev = id.rev
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AND id.guid = sm.guid
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AND sm.obsoleted_by IS NOT null
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AND sm.archived = 'true';
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8565
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leinfelder
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/* Clean up
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*/
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8576
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leinfelder
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DROP TABLE IF EXISTS current_documents;
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DROP TABLE IF EXISTS restore_documents;
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| 174 |
8565
|
leinfelder
|
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| 175 |
8609
|
cjones
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/* Register schemas
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*/
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DELETE FROM xml_catalog
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WHERE entry_type LIKE 'Schema'
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AND system_id LIKE '%/dataone/%';
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DELETE FROM xml_catalog
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WHERE entry_type LIKE 'Schema'
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AND system_id LIKE '%/dc/%';
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DELETE FROM xml_catalog
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WHERE entry_type LIKE 'Schema'
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8617
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cjones
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AND system_id LIKE '%/dwc/%';
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DELETE FROM xml_catalog
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WHERE entry_type LIKE 'Schema'
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8609
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cjones
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AND system_id LIKE '%/dryad/%';
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://ns.dataone.org/service/types/v1', '/schema/dataone/dataoneTypes.xsd');
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://ns.dataone.org/service/types/v1.1', '/schema/dataone/dataoneTypes_v1.1.xsd');
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://purl.org/dryad/schema/terms/v3.1', '/schema/dryad/dryad.xsd');
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://purl.org/dryad/schema/dryad-bibo/v3.1', '/schema/dryad/dryad-bibo.xsd');
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://purl.org/dc/terms/', '/schema/dc/dcterms.xsd');
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://purl.org/dc/elements/1.1/', '/schema/dc/dc.xsd');
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://purl.org/dc/dcmitype/', '/schema/dc/dcmitype.xsd');
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8617
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cjones
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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VALUES ('Schema', 'http://rs.tdwg.org/dwc/terms/', '/schema/dwc/tdwg_dwcterms.xsd');
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8609
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cjones
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| 206 |
8555
|
leinfelder
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/*
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* update the database version
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*/
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UPDATE db_version SET status=0;
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INSERT INTO db_version (version, status, date_created)
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VALUES ('2.4.0', 1, CURRENT_DATE);
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