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/**
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* '$RCSfile$'
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* Purpose: A Class that represents a structured query, and can be
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* constructed from an XML serialization conforming to
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* pathquery.dtd. The printSQL() method can be used to print
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* a SQL serialization of the query.
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* Copyright: 2000 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* Authors: Matt Jones
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*
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* '$Author: leinfelder $'
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* '$Date: 2013-02-22 11:07:31 -0800 (Fri, 22 Feb 2013) $'
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* '$Revision: 7495 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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package edu.ucsb.nceas.metacat;
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import java.io.IOException;
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import java.io.Reader;
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import java.io.StringReader;
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import java.util.ArrayList;
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import java.util.Enumeration;
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import java.util.List;
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import java.util.Stack;
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import java.util.Vector;
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import edu.ucsb.nceas.metacat.shared.MetacatUtilException;
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import edu.ucsb.nceas.metacat.util.MetacatUtil;
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import edu.ucsb.nceas.metacat.util.SystemUtil;
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//import edu.ucsb.nceas.utilities.UtilException;
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import org.apache.log4j.Logger;
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import org.xml.sax.Attributes;
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import org.xml.sax.InputSource;
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import org.xml.sax.SAXException;
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import org.xml.sax.XMLReader;
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import org.xml.sax.helpers.DefaultHandler;
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import org.xml.sax.helpers.XMLReaderFactory;
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import java.util.Iterator;
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/**
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* A Class that represents a structured query, and can be constructed from an
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* XML serialization conforming to
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*
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* @see pathquery.dtd. The printSQL() method can be used to print a SQL
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* serialization of the query.
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*/
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public class QuerySpecification extends DefaultHandler
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{
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/** flag determining whether extended query terms are present */
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private boolean containsExtendedSQL = false;
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/** flag determining whether predicates are present */
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private boolean containsPredicates = false;
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/** Identifier for this query document */
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private String meta_file_id;
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/** Title of this query */
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private String queryTitle;
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/** List of document types to be returned using package back tracing */
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private Vector returnDocList;
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/** List of document types to be searched */
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private Vector filterDocList;
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/** List of fields to be returned in result set */
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private Vector returnFieldList;
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/** List of fields with "[" and "]" in result set. This is a subset of returnFieldList.
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* If some of return fields have [, those fields will be stored this vector (we have different query for those return fields */
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private Vector returnFieldListWithPredicates;
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/** List of users owning documents to be searched */
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private Vector ownerList;
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/** The root query group that contains the recursive query constraints */
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private QueryGroup query = null;
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/** A string buffer to stored normalized query (Sometimes, the query have
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* a value like "&", it will cause problem in html transform). So we need a
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* normalized query xml string.
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*/
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private StringBuffer xml = new StringBuffer();
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// Query data structures used temporarily during XML parsing
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private Stack elementStack;
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private Stack queryStack;
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private String currentValue;
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private String currentPathexpr;
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private String parserName = null;
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private String accNumberSeparator = null;
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private boolean percentageSearch = false;
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private String userName = null;
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private static final String PUBLIC = "public";
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private String[] group = null;
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public static final String ATTRIBUTESYMBOL = "@";
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public static final char PREDICATE_START = '[';
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public static final char PREDICATE_END = ']';
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//private boolean hasAttributeReturnField = false;
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//private Hashtable attributeReturnList = new Hashtable();
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//private int countAttributeReturnField = 0;
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private StringBuffer textBuffer = new StringBuffer();
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private static Logger logMetacat = Logger.getLogger(QuerySpecification.class);
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/**
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* construct an instance of the QuerySpecification class
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*
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* @param queryspec
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* the XML representation of the query (should conform to
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* pathquery.dtd) as a Reader
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* @param parserName
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* the fully qualified name of a Java Class implementing the
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* org.xml.sax.XMLReader interface
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*/
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public QuerySpecification(Reader queryspec, String parserName,
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String accNumberSeparator) throws IOException
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{
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super();
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// Initialize the class variables
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returnDocList = new Vector();
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filterDocList = new Vector();
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elementStack = new Stack();
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queryStack = new Stack();
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returnFieldList = new Vector();
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returnFieldListWithPredicates = new Vector();
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ownerList = new Vector();
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this.parserName = parserName;
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this.accNumberSeparator = accNumberSeparator;
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// Initialize the parser and read the queryspec
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XMLReader parser = initializeParser();
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if (parser == null) {
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logMetacat.error("QuerySpecification() - SAX parser not instantiated properly.");
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}
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try {
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parser.parse(new InputSource(queryspec));
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} catch (SAXException se) {
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logMetacat.error("QuerySpecification() - SAX error parsing data: " + se.getMessage());
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}
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}
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/**
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* construct an instance of the QuerySpecification class
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*
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* @param queryspec
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* the XML representation of the query (should conform to
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* pathquery.dtd) as a String
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* @param parserName
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* the fully qualified name of a Java Class implementing the
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* org.xml.sax.Parser interface
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*/
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public QuerySpecification(String queryspec, String parserName,
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String accNumberSeparator) throws IOException
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{
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this(new StringReader(queryspec), parserName, accNumberSeparator);
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}
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/**
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* construct an instance of the QuerySpecification class which don't need
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* to parser a xml document
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*
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* @param accNumberSeparator
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* the separator between doc version
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*/
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public QuerySpecification(String accNumberSeparator) throws IOException
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{
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// Initialize the class variables
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returnDocList = new Vector();
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filterDocList = new Vector();
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elementStack = new Stack();
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queryStack = new Stack();
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returnFieldList = new Vector();
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returnFieldListWithPredicates = new Vector();
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ownerList = new Vector();
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this.accNumberSeparator = accNumberSeparator;
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}
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/**
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* Method to set user name
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*
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* @param myName
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* the user name
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*/
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public void setUserName(String myName)
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{
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//to lower case
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if (myName != null) {
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this.userName = myName.toLowerCase();
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} else {
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this.userName = myName;
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}
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}
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/**
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* Method to set user group
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*
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* @param myGroup
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* the user group
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*/
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public void setGroup(String[] myGroup)
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{
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this.group = myGroup;
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}
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/**
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* Method to indicate this query is a percentage search
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*/
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public boolean isPercentageSearch()
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{
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return percentageSearch;
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}
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/*
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* Method to get owner query. If it is owner it has all permission
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*/
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private String createOwnerQuery()
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{
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String ownerQuery = null;
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//if user is public, we don't need to run owner query
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if (userName != null && !userName.equalsIgnoreCase(PUBLIC))
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{
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ownerQuery = "SELECT docid FROM xml_documents WHERE ";
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if (userName != null && !userName.equals("")) {
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ownerQuery = ownerQuery + "lower(user_owner) ='" + userName + "'";
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}
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}
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logMetacat.info("QuerySpecification.createOwerQuery - OwnerQuery: " + ownerQuery);
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return ownerQuery;
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}
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/*
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* Method to create query for xml_access, this part is to get docid list
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* which have a allow rule for a given user
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*/
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private String createAllowRuleQuery()
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{
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String allowQuery = null;
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String allowString = constructAllowString();
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allowQuery = "SELECT guid from xml_access " +
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"WHERE ( " + allowString;
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allowQuery = allowQuery + ")";
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logMetacat.info("QuerySpecification.createAllowRuleQuery - allow query is: " + allowQuery);
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return allowQuery;
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}
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/* Method to construct a allow rule string */
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private String constructAllowString()
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{
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String allowQuery = "";
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// add public
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allowQuery = "(lower(principal_name) = '" + PUBLIC
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+ "'";
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// add user name
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if (userName != null && !userName.equals("") && !userName.equalsIgnoreCase(PUBLIC)) {
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allowQuery = allowQuery + "OR lower(principal_name) = '" + userName +"'";
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}
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// add group
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if (group != null) {
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for (int i = 0; i < group.length; i++) {
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String groupUint = group[i];
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if (groupUint != null && !groupUint.equals("")) {
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groupUint = groupUint.toLowerCase();
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allowQuery = allowQuery + " OR lower(principal_name) = '"
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+ groupUint + "'";
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}//if
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}//for
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}//if
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// add allow rule
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allowQuery = allowQuery + ") AND perm_type = 'allow'" + " AND permission > 3";
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logMetacat.info("QuerySpecification.constructAllowString - allow string is: " + allowQuery);
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return allowQuery;
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}
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/*
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* Method to create query for xml_access, this part is to get docid list
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* which have a deny rule and perm_order is allowFirst for a given user.
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* This means the user will be denied to read
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*/
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private String createDenyRuleQuery()
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{
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String denyQuery = null;
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String denyString = constructDenyString();
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denyQuery = "SELECT guid from xml_access " +
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"WHERE ( " + denyString;
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denyQuery = denyQuery + ") ";
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logMetacat.info("QuerySpecification.createDenyRuleQuery - denyquery is: " + denyQuery);
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return denyQuery;
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}
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/* Construct deny string */
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private String constructDenyString()
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{
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String denyQuery = "";
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// add public
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denyQuery = "(lower(principal_name) = '" + PUBLIC
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+ "'";
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// add user name
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if (userName != null && !userName.equals("") && !userName.equalsIgnoreCase(PUBLIC)) {
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denyQuery = denyQuery + "OR lower(principal_name) = '" + userName +"'";
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}
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// add groups
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if (group != null) {
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for (int i = 0; i < group.length; i++) {
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String groupUint = group[i];
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if (groupUint != null && !groupUint.equals("")) {
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groupUint = groupUint.toLowerCase();
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denyQuery = denyQuery + " OR lower(principal_name) = '"
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+ groupUint + "'";
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}//if
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}//for
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}//if
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// add deny rules
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denyQuery = denyQuery + ") AND perm_type = 'deny'" + " AND perm_order ='allowFirst'" +" AND permission > 3";
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logMetacat.info("QuerySpecification.constructDenyString - deny string is: " + denyQuery);
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return denyQuery;
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}
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/**
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* Method to append a access control query to SQL. So in DBQuery class, we
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* can get docid from both user specified query and access control query.
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* We don't need to checking permission after we get the doclist. It will
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* be good to performance
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*
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*/
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public String getAccessQuery()
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{
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String accessQuery = null;
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String owner = createOwnerQuery();
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String allow = createAllowRuleQuery();
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String deny = createDenyRuleQuery();
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if (owner != null)
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{
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accessQuery = " AND (xml_documents.docid IN (" + owner + ")";
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accessQuery = accessQuery + " OR (identifier.guid IN (" + allow + ")"
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+ " AND identifier.guid NOT IN (" + deny + ")))";
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}
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else
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{
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accessQuery = " AND (identifier.guid IN (" + allow + ")"
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+ " AND identifier.guid NOT IN (" + deny + "))";
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}
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logMetacat.info("QuerySpecification.getAccessQuery - access query is: " + accessQuery);
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return accessQuery;
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}
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/**
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* Returns true if the parsed query contains and extended xml query (i.e.
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* there is at least one <returnfield> in the pathquery document)
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*/
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public boolean containsExtendedSQL()
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{
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if (containsExtendedSQL) {
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return true;
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} else {
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return false;
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}
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}
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/**
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* Accessor method to return the identifier of this Query
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*/
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public String getIdentifier()
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{
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return meta_file_id;
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}
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/**
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* method to set the identifier of this query
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*/
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public void setIdentifier(String id)
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{
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this.meta_file_id = id;
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}
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/**
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* Accessor method to return the title of this Query
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*/
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public String getQueryTitle()
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{
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return queryTitle;
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}
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/**
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* method to set the title of this query
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*/
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public void setQueryTitle(String title)
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{
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this.queryTitle = title;
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}
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|
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/**
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* Accessor method to return a vector of the return document types as
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* defined in the <returndoctype> tag in the pathquery dtd.
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*/
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public Vector getReturnDocList()
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{
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return this.returnDocList;
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}
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|
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/**
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* method to set the list of return docs of this query
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*/
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public void setReturnDocList(Vector returnDocList)
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{
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this.returnDocList = returnDocList;
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}
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/**
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* Accessor method to return a vector of the filter doc types as defined in
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* the <filterdoctype> tag in the pathquery dtd.
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*/
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public Vector getFilterDocList()
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{
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return this.filterDocList;
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}
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463
|
|
464
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/**
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465
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* method to set the list of filter docs of this query
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466
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*/
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public void setFilterDocList(Vector filterDocList)
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{
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this.filterDocList = filterDocList;
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470
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}
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471
|
|
472
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/**
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473
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* Accessor method to return a vector of the extended return fields as
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* defined in the <returnfield> tag in the pathquery dtd.
|
475
|
*/
|
476
|
public Vector getReturnFieldList()
|
477
|
{
|
478
|
return this.returnFieldList;
|
479
|
}
|
480
|
|
481
|
/**
|
482
|
* method to set the list of fields to be returned by this query
|
483
|
*/
|
484
|
public void setReturnFieldList(Vector returnFieldList)
|
485
|
{
|
486
|
this.returnFieldList = returnFieldList;
|
487
|
}
|
488
|
|
489
|
/**
|
490
|
* Accessor method to return a vector of the owner fields as defined in the
|
491
|
* <owner> tag in the pathquery dtd.
|
492
|
*/
|
493
|
public Vector getOwnerList()
|
494
|
{
|
495
|
return this.ownerList;
|
496
|
}
|
497
|
|
498
|
/**
|
499
|
* method to set the list of owners used to constrain this query
|
500
|
*/
|
501
|
public void setOwnerList(Vector ownerList)
|
502
|
{
|
503
|
this.ownerList = ownerList;
|
504
|
}
|
505
|
|
506
|
/**
|
507
|
* get the QueryGroup used to express query constraints
|
508
|
*/
|
509
|
public QueryGroup getQueryGroup()
|
510
|
{
|
511
|
return query;
|
512
|
}
|
513
|
|
514
|
/**
|
515
|
* set the querygroup
|
516
|
*/
|
517
|
public void setQueryGroup(QueryGroup group)
|
518
|
{
|
519
|
query = group;
|
520
|
}
|
521
|
|
522
|
/**
|
523
|
* set if this query sepcification has extendQuery(has return doc type or
|
524
|
* not)
|
525
|
*/
|
526
|
public void setContainsExtenedSQL(boolean hasExtenedQuery)
|
527
|
{
|
528
|
containsExtendedSQL = hasExtenedQuery;
|
529
|
}
|
530
|
|
531
|
/**
|
532
|
* Set up the SAX parser for reading the XML serialized query
|
533
|
*/
|
534
|
private XMLReader initializeParser()
|
535
|
{
|
536
|
XMLReader parser = null;
|
537
|
|
538
|
// Set up the SAX document handlers for parsing
|
539
|
try {
|
540
|
|
541
|
// Get an instance of the parser
|
542
|
parser = XMLReaderFactory.createXMLReader(parserName);
|
543
|
|
544
|
// Set the ContentHandler to this instance
|
545
|
parser.setContentHandler(this);
|
546
|
|
547
|
// Set the error Handler to this instance
|
548
|
parser.setErrorHandler(this);
|
549
|
|
550
|
} catch (Exception e) {
|
551
|
logMetacat.error("QuerySpecification.getAccessQuery - Error: " + e.getMessage());
|
552
|
}
|
553
|
|
554
|
return parser;
|
555
|
}
|
556
|
|
557
|
/**
|
558
|
* callback method used by the SAX Parser when the start tag of an element
|
559
|
* is detected. Used in this context to parse and store the query
|
560
|
* information in class variables.
|
561
|
*/
|
562
|
public void startElement(String uri, String localName, String qName,
|
563
|
Attributes atts) throws SAXException
|
564
|
{
|
565
|
logMetacat.debug("QuerySpecification.startElement - start element " + localName);
|
566
|
BasicNode currentNode = new BasicNode(localName);
|
567
|
//write element name into xml buffer.
|
568
|
xml.append("<");
|
569
|
xml.append(localName);
|
570
|
// add attributes to BasicNode here
|
571
|
if (atts != null) {
|
572
|
int len = atts.getLength();
|
573
|
for (int i = 0; i < len; i++) {
|
574
|
currentNode
|
575
|
.setAttribute(atts.getLocalName(i), atts.getValue(i));
|
576
|
xml.append(" ");
|
577
|
xml.append(atts.getLocalName(i));
|
578
|
xml.append("=\"");
|
579
|
xml.append(atts.getValue(i));
|
580
|
xml.append("\"");
|
581
|
}
|
582
|
}
|
583
|
xml.append(">");
|
584
|
|
585
|
elementStack.push(currentNode);
|
586
|
if (currentNode.getTagName().equals("querygroup")) {
|
587
|
QueryGroup currentGroup = new QueryGroup(currentNode
|
588
|
.getAttribute("operator"));
|
589
|
if (query == null) {
|
590
|
query = currentGroup;
|
591
|
} else {
|
592
|
QueryGroup parentGroup = (QueryGroup) queryStack.peek();
|
593
|
parentGroup.addChild(currentGroup);
|
594
|
}
|
595
|
queryStack.push(currentGroup);
|
596
|
}
|
597
|
logMetacat.debug("QuerySpecification.startElement - ending startElement " + localName);
|
598
|
}
|
599
|
|
600
|
/**
|
601
|
* callback method used by the SAX Parser when the end tag of an element is
|
602
|
* detected. Used in this context to parse and store the query information
|
603
|
* in class variables.
|
604
|
*/
|
605
|
public void endElement(String uri, String localName, String qName)
|
606
|
throws SAXException
|
607
|
{
|
608
|
logMetacat.debug("QuerySpecification.endElement - endElement "+localName);
|
609
|
BasicNode leaving = (BasicNode) elementStack.pop();
|
610
|
if (leaving.getTagName().equals("queryterm")) {
|
611
|
boolean isCaseSensitive = (new Boolean(leaving
|
612
|
.getAttribute("casesensitive"))).booleanValue();
|
613
|
QueryTerm currentTerm = null;
|
614
|
if (currentPathexpr == null) {
|
615
|
currentTerm = new QueryTerm(isCaseSensitive, leaving
|
616
|
.getAttribute("searchmode"), currentValue);
|
617
|
} else {
|
618
|
currentTerm = new QueryTerm(isCaseSensitive, leaving
|
619
|
.getAttribute("searchmode"), currentValue,
|
620
|
currentPathexpr);
|
621
|
}
|
622
|
QueryGroup currentGroup = (QueryGroup) queryStack.peek();
|
623
|
currentGroup.addChild(currentTerm);
|
624
|
currentValue = null;
|
625
|
currentPathexpr = null;
|
626
|
} else if (leaving.getTagName().equals("querygroup")) {
|
627
|
QueryGroup leavingGroup = (QueryGroup) queryStack.pop();
|
628
|
} else if (leaving.getTagName().equals("meta_file_id")) {
|
629
|
meta_file_id = textBuffer.toString().trim();
|
630
|
} else if (leaving.getTagName().equals("querytitle")) {
|
631
|
queryTitle = textBuffer.toString().trim();
|
632
|
} else if (leaving.getTagName().equals("value")) {
|
633
|
currentValue = textBuffer.toString().trim();
|
634
|
currentValue = MetacatUtil.normalize(currentValue);
|
635
|
} else if (leaving.getTagName().equals("pathexpr")) {
|
636
|
currentPathexpr = textBuffer.toString().trim();
|
637
|
} else if (leaving.getTagName().equals("returndoctype")) {
|
638
|
returnDocList.add(textBuffer.toString().trim());
|
639
|
} else if (leaving.getTagName().equals("filterdoctype")) {
|
640
|
filterDocList.add(textBuffer.toString().trim());
|
641
|
} else if (leaving.getTagName().equals("returnfield")) {
|
642
|
handleReturnField(textBuffer.toString().trim());
|
643
|
} else if (leaving.getTagName().equals("filterdoctype")) {
|
644
|
filterDocList.add(textBuffer.toString().trim());
|
645
|
} else if (leaving.getTagName().equals("owner")) {
|
646
|
ownerList.add(textBuffer.toString().trim());
|
647
|
}
|
648
|
String normalizedXML = textBuffer.toString().trim();
|
649
|
logMetacat.debug("QuerySpecification.endElement - before normalize: " + normalizedXML);
|
650
|
normalizedXML = MetacatUtil.normalize(normalizedXML);
|
651
|
logMetacat.debug("QuerySpecification.endElement - after normalize " + normalizedXML);
|
652
|
xml.append(normalizedXML);
|
653
|
xml.append("</");
|
654
|
xml.append(localName);
|
655
|
xml.append(">");
|
656
|
//rest textBuffer
|
657
|
textBuffer = new StringBuffer();
|
658
|
|
659
|
}
|
660
|
|
661
|
/**
|
662
|
* Gets normailized query string in xml format, which can be transformed
|
663
|
* to html
|
664
|
*/
|
665
|
public String getNormalizedXMLQuery()
|
666
|
{
|
667
|
//System.out.println("normailized xml \n"+xml.toString());
|
668
|
return xml.toString();
|
669
|
}
|
670
|
|
671
|
|
672
|
/**
|
673
|
* callback method used by the SAX Parser when the text sequences of an xml
|
674
|
* stream are detected. Used in this context to parse and store the query
|
675
|
* information in class variables.
|
676
|
*/
|
677
|
public void characters(char ch[], int start, int length)
|
678
|
{
|
679
|
// buffer all text nodes for same element. This is for text was splited
|
680
|
// into different nodes
|
681
|
String text = new String(ch, start, length);
|
682
|
logMetacat.debug("QuerySpecification.characters - the text in characters " + text);
|
683
|
textBuffer.append(text);
|
684
|
|
685
|
}
|
686
|
|
687
|
/**
|
688
|
* Method to handle return field. It will be callied in ecogrid part
|
689
|
* @param inputString
|
690
|
*/
|
691
|
public void handleReturnField(String inputString)
|
692
|
{
|
693
|
int attributePos = inputString.indexOf(ATTRIBUTESYMBOL);
|
694
|
int predicateStart = -1;
|
695
|
int predicateEnd;
|
696
|
boolean hasPredicate = false;
|
697
|
|
698
|
while (true)
|
699
|
{
|
700
|
predicateStart = inputString.indexOf(PREDICATE_START, predicateStart + 1);
|
701
|
|
702
|
if (attributePos == -1)
|
703
|
break;
|
704
|
|
705
|
if (predicateStart == -1)
|
706
|
break;
|
707
|
|
708
|
hasPredicate = true;
|
709
|
|
710
|
if (attributePos < predicateStart)
|
711
|
break;
|
712
|
|
713
|
predicateEnd = inputString.indexOf(PREDICATE_END, predicateStart);
|
714
|
|
715
|
if (predicateEnd == -1)
|
716
|
{
|
717
|
logMetacat.warn("QuerySpecification.handleReturnField - Invalid path: " + inputString);
|
718
|
return;
|
719
|
}
|
720
|
|
721
|
while (attributePos < predicateEnd)
|
722
|
{
|
723
|
attributePos = inputString.indexOf(ATTRIBUTESYMBOL, attributePos + 1);
|
724
|
|
725
|
if (attributePos == -1)
|
726
|
break;
|
727
|
}
|
728
|
}
|
729
|
|
730
|
if (hasPredicate)
|
731
|
{
|
732
|
containsPredicates = true;
|
733
|
returnFieldListWithPredicates.add(inputString);
|
734
|
}
|
735
|
|
736
|
containsExtendedSQL = true;
|
737
|
|
738
|
// no attribute value will be returned
|
739
|
logMetacat.info("QuerySpecification.handleReturnField - there are no attributes in the XPATH statement" );
|
740
|
returnFieldList.add(inputString);
|
741
|
}
|
742
|
|
743
|
/**
|
744
|
* create a SQL serialization of the query that this instance represents
|
745
|
*/
|
746
|
public String printSQL(boolean useXMLIndex, List<Object> parameterValues)
|
747
|
{
|
748
|
|
749
|
StringBuffer self = new StringBuffer();
|
750
|
StringBuffer queryString = new StringBuffer();
|
751
|
|
752
|
queryString.append("SELECT xml_documents.docid, identifier.guid, docname, doctype, date_created, date_updated, xml_documents.rev ");
|
753
|
queryString.append("FROM xml_documents, identifier ");
|
754
|
queryString.append("WHERE xml_documents.docid = identifier.docid AND xml_documents.rev = identifier.rev AND");
|
755
|
|
756
|
// Get the query from the QueryGroup and check
|
757
|
// if no query has been returned
|
758
|
String queryFromQueryGroup;
|
759
|
// keep track of the values we add as prepared statement question marks (?)
|
760
|
List<Object> groupValues = new ArrayList<Object>();
|
761
|
if (query != null) {
|
762
|
queryFromQueryGroup = query.printSQL(useXMLIndex, groupValues);
|
763
|
} else {
|
764
|
queryFromQueryGroup = "";
|
765
|
}
|
766
|
logMetacat.info("QuerySpecification.printSQL - Query : " + queryFromQueryGroup);
|
767
|
|
768
|
if(!queryFromQueryGroup.trim().equals("")){
|
769
|
self.append(" xml_documents.docid IN (");
|
770
|
self.append(queryFromQueryGroup);
|
771
|
self.append(") ");
|
772
|
// add the parameter values
|
773
|
parameterValues.addAll(groupValues);
|
774
|
}
|
775
|
|
776
|
// Add SQL to filter for doctypes requested in the query
|
777
|
// This is an implicit OR for the list of doctypes. Only doctypes in
|
778
|
// this
|
779
|
// list will be searched if the tag is present
|
780
|
if (!filterDocList.isEmpty()) {
|
781
|
boolean firstdoctype = true;
|
782
|
|
783
|
if (!self.toString().equals("")){
|
784
|
self.append(" AND ");
|
785
|
}
|
786
|
self.append(" (");
|
787
|
|
788
|
Enumeration en = filterDocList.elements();
|
789
|
while (en.hasMoreElements()) {
|
790
|
String currentDoctype = (String) en.nextElement();
|
791
|
if (firstdoctype) {
|
792
|
firstdoctype = false;
|
793
|
self.append(" doctype = ?");
|
794
|
} else {
|
795
|
self.append(" OR doctype = ?");
|
796
|
}
|
797
|
parameterValues.add(currentDoctype);
|
798
|
|
799
|
}
|
800
|
|
801
|
self.append(") ");
|
802
|
|
803
|
}
|
804
|
|
805
|
// Add SQL to filter for owners requested in the query
|
806
|
// This is an implicit OR for the list of owners
|
807
|
if (!ownerList.isEmpty()) {
|
808
|
boolean first = true;
|
809
|
|
810
|
if (!self.toString().equals("")){
|
811
|
self.append(" AND ");
|
812
|
}
|
813
|
self.append(" (");
|
814
|
|
815
|
|
816
|
Enumeration en = ownerList.elements();
|
817
|
while (en.hasMoreElements()) {
|
818
|
String current = (String) en.nextElement();
|
819
|
if (current != null) {
|
820
|
current = current.toLowerCase();
|
821
|
}
|
822
|
if (first) {
|
823
|
first = false;
|
824
|
self.append(" lower(user_owner) = ?");
|
825
|
} else {
|
826
|
self.append(" OR lower(user_owner) = ?");
|
827
|
}
|
828
|
parameterValues.add(current);
|
829
|
}
|
830
|
|
831
|
self.append(") ");
|
832
|
|
833
|
}
|
834
|
|
835
|
// if there is only one percentage search item, this query is a
|
836
|
// percentage search query
|
837
|
if (query != null) {
|
838
|
logMetacat.info("QuerySpecification.printSQL - percentage number: " + query.getPercentageSymbolCount());
|
839
|
if (query.getPercentageSymbolCount() == 1) {
|
840
|
logMetacat.info("QuerySpecification.printSQL - It is a percentage search");
|
841
|
percentageSearch = true;
|
842
|
}
|
843
|
}
|
844
|
|
845
|
queryString.append(self.toString());
|
846
|
return queryString.toString();
|
847
|
}
|
848
|
|
849
|
|
850
|
|
851
|
/**
|
852
|
* This method prints sql based upon the <returnfield> tag in the
|
853
|
* pathquery document. This allows for customization of the returned fields.
|
854
|
* If the boolean useXMLIndex paramter is false, it uses a recursive query on
|
855
|
* xml_nodes to find the fields to be included by their path expression, and
|
856
|
* avoids the use of the xml_index table.
|
857
|
*
|
858
|
* @param doclist the list of document ids to search
|
859
|
* @param unaccessableNodePair the node pairs (start id and end id) which
|
860
|
* this user should not access
|
861
|
* @param useXMLIndex a boolean flag indicating whether to search using
|
862
|
* xml_index
|
863
|
*/
|
864
|
public String printExtendedSQL(String doclist, boolean useXMLIndex, List<Object> allValues, List<Object> docListValues)
|
865
|
{
|
866
|
|
867
|
// keep track of the values we add as prepared statement question marks (?)
|
868
|
//List<Object> allValues = new ArrayList<Object>();
|
869
|
|
870
|
if (useXMLIndex && !containsPredicates) {
|
871
|
// keep track of the values we add as prepared statement question marks (?)
|
872
|
List<Object> parameterValues = new ArrayList<Object>();
|
873
|
String query = printExtendedSQL(doclist, parameterValues, docListValues);
|
874
|
// add parameter values to our running list
|
875
|
allValues.addAll(parameterValues);
|
876
|
return query;
|
877
|
}
|
878
|
else
|
879
|
{
|
880
|
StringBuffer self = new StringBuffer();
|
881
|
boolean firstfield = true;
|
882
|
// keep track of the values we add as prepared statement question marks (?)
|
883
|
List<Object> parameterValues = new ArrayList<Object>();
|
884
|
// first part comes from fields without predicates
|
885
|
String queryFromWithoutPrecidates = printExtendedSQL(doclist, parameterValues, docListValues);
|
886
|
// add parameter values to our running list
|
887
|
allValues.addAll(parameterValues);
|
888
|
if (queryFromWithoutPrecidates != null) {
|
889
|
// it has return fields without predicate
|
890
|
self.append(queryFromWithoutPrecidates);
|
891
|
firstfield = false;
|
892
|
}
|
893
|
//put the returnfields into the query
|
894
|
//the for loop allows for multiple fields
|
895
|
for (int i = 0; i < returnFieldListWithPredicates.size(); i++)
|
896
|
{
|
897
|
if (firstfield)
|
898
|
{
|
899
|
firstfield = false;
|
900
|
}
|
901
|
else
|
902
|
{
|
903
|
self.append(" UNION ");
|
904
|
}
|
905
|
String path = (String) returnFieldListWithPredicates.elementAt(i);
|
906
|
//path = path.replaceAll("'", "''");
|
907
|
// TODO: can we use prepared statements for this?
|
908
|
allValues.add(path);
|
909
|
self.append("select xml_nodes.docid, ");
|
910
|
self.append("? as path, ");
|
911
|
self.append("xml_nodes.nodedata, ");
|
912
|
self.append("xml_nodes.parentnodeid, ");
|
913
|
self.append("xml_nodes.nodetype ");
|
914
|
//self.append("from xml_nodes, xml_documents ");
|
915
|
self.append("from xml_nodes ");
|
916
|
self.append("where ");
|
917
|
// keep track of the values we add as prepared statement question marks (?)
|
918
|
List<Object> nestedParameterValues = new ArrayList<Object>();
|
919
|
String nestedQuery = QueryTerm.useNestedStatements(path, nestedParameterValues);
|
920
|
self.append(nestedQuery);
|
921
|
// add to the running total
|
922
|
allValues.addAll(nestedParameterValues);
|
923
|
|
924
|
self.append(" AND xml_nodes.docid in (");
|
925
|
self.append(doclist);
|
926
|
allValues.addAll(docListValues);
|
927
|
|
928
|
if (returnFieldIsAttribute(path))
|
929
|
{
|
930
|
self.append(")");
|
931
|
}
|
932
|
else
|
933
|
{
|
934
|
self.append(") AND xml_nodes.nodetype = 'TEXT'");
|
935
|
}
|
936
|
//self.append(" AND xml_nodes.rootnodeid = xml_documents.rootnodeid");
|
937
|
|
938
|
//addAccessRestrictionSQL(unaccessableNodePair, self);
|
939
|
}
|
940
|
|
941
|
return self.toString();
|
942
|
}
|
943
|
}
|
944
|
|
945
|
/*
|
946
|
* Determines the returnfield is an attribute of not.
|
947
|
* For given returnfield, this programm will cut the part of path after last slash.
|
948
|
* If no slash in the path, the original string will be considered as last part.
|
949
|
* If first character of last part is @ it will retrun true.
|
950
|
*/
|
951
|
private boolean returnFieldIsAttribute(String path)
|
952
|
{
|
953
|
boolean isAttribute = false;
|
954
|
if (path != null)
|
955
|
{
|
956
|
int slashIndex = path.lastIndexOf("/");
|
957
|
if (slashIndex !=-1)
|
958
|
{
|
959
|
// if there is slash in the path, path should be replace by the last part
|
960
|
path = path.substring(slashIndex+1);
|
961
|
}
|
962
|
logMetacat.debug("QuerySpecification.returnFieldIsAttribute - final path is " + path);
|
963
|
// if first of character of path is @, the path is attribute
|
964
|
if (path.charAt(0) == '@')
|
965
|
{
|
966
|
logMetacat.debug("QuerySpecification.returnFieldIsAttribute - it is an attribute");
|
967
|
isAttribute = true;
|
968
|
}
|
969
|
}
|
970
|
return isAttribute;
|
971
|
}
|
972
|
|
973
|
/**
|
974
|
* This method prints sql based upon the <returnfield> tag in the
|
975
|
* pathquery document. This allows for customization of the returned fields.
|
976
|
* It uses the xml_index table and so assumes that this table has been
|
977
|
* built.
|
978
|
*
|
979
|
* @param doclist the list of document ids to search
|
980
|
* @param unaccessableNodePair the node pairs (start id and end id)
|
981
|
* which this user should not access
|
982
|
*/
|
983
|
private String printExtendedSQL(String doclist, List<Object> values, List<Object> docListValues) {
|
984
|
|
985
|
// keep track of the values we add as prepared statement question marks (?)
|
986
|
//List<Object> values = new ArrayList<Object>();
|
987
|
|
988
|
logMetacat.debug("QuerySpecification.printExtendedSQL - in printExtendedSQL");
|
989
|
StringBuffer self = new StringBuffer();
|
990
|
Vector<String> elementVector = new Vector<String>();
|
991
|
Vector<String> attributeVector = new Vector<String>();
|
992
|
|
993
|
boolean usePathIndex = true;
|
994
|
|
995
|
// test if the are elements in the return fields
|
996
|
if ( returnFieldList.size() == 0 ) {
|
997
|
return null;
|
998
|
}
|
999
|
|
1000
|
for (int i = 0; i < returnFieldList.size(); i++) {
|
1001
|
String path = (String)returnFieldList.elementAt(i);
|
1002
|
// Since return fileds having preicates will be handle in another path,
|
1003
|
// we should skip it.
|
1004
|
if (returnFieldListWithPredicates.contains(path)) {
|
1005
|
continue;
|
1006
|
}
|
1007
|
|
1008
|
if (path != null && path.indexOf(ATTRIBUTESYMBOL) != -1) {
|
1009
|
attributeVector.add(path);
|
1010
|
} else {
|
1011
|
elementVector.add(path);
|
1012
|
}
|
1013
|
|
1014
|
|
1015
|
try {
|
1016
|
if (!SystemUtil.getPathsForIndexing().contains(path)) {
|
1017
|
usePathIndex = false;
|
1018
|
}
|
1019
|
} catch (MetacatUtilException mue) {
|
1020
|
logMetacat.warn("QuerySpecification.printExtendedSQL - Could not get index paths: " + mue.getMessage());
|
1021
|
}
|
1022
|
|
1023
|
}
|
1024
|
// check if has return field
|
1025
|
if (elementVector.size() == 0 && attributeVector.size()==0)
|
1026
|
{
|
1027
|
return null;
|
1028
|
}
|
1029
|
|
1030
|
if (usePathIndex){
|
1031
|
self.append("select docid, path, nodedata, parentnodeid, null as nodetype ");
|
1032
|
self.append("from xml_path_index where path in ( ");
|
1033
|
|
1034
|
boolean firstfield = true;
|
1035
|
//put the returnfields into the query
|
1036
|
//the for loop allows for multiple fields
|
1037
|
for (int i = 0; i < returnFieldList.size(); i++) {
|
1038
|
String returnField = (String) returnFieldList.elementAt(i);
|
1039
|
// in case we have predicate conditions with quotes
|
1040
|
returnField = returnField.replaceAll("'", "''");
|
1041
|
if (firstfield) {
|
1042
|
firstfield = false;
|
1043
|
self.append("? ");
|
1044
|
values.add(returnField);
|
1045
|
}
|
1046
|
else {
|
1047
|
self.append(", ? ");
|
1048
|
values.add(returnField);
|
1049
|
}
|
1050
|
}
|
1051
|
self.append(") AND docid in (");
|
1052
|
self.append(doclist);
|
1053
|
values.addAll(docListValues);
|
1054
|
self.append(")");
|
1055
|
|
1056
|
} else {
|
1057
|
self.append("select xml_nodes.docid, xml_index.path, xml_nodes.nodedata, ");
|
1058
|
self.append("xml_nodes.parentnodeid, ");
|
1059
|
self.append("xml_nodes.nodetype ");
|
1060
|
self.append("FROM xml_index, xml_nodes WHERE (");
|
1061
|
|
1062
|
boolean firstElement = true;
|
1063
|
boolean firstAttribute = true;
|
1064
|
//put the returnfields into the query
|
1065
|
//the for loop allows for multiple fields
|
1066
|
if (elementVector.size() != 0)
|
1067
|
{
|
1068
|
for (int i = 0; i < elementVector.size(); i++) {
|
1069
|
String path = (String) elementVector.elementAt(i);
|
1070
|
if (firstElement) {
|
1071
|
firstElement = false;
|
1072
|
self.append(" (xml_index.nodeid=xml_nodes.parentnodeid AND xml_index.path IN ( ");
|
1073
|
self.append("?");
|
1074
|
values.add(path);
|
1075
|
}
|
1076
|
else
|
1077
|
{
|
1078
|
self.append(", ? ");
|
1079
|
values.add(path);
|
1080
|
}
|
1081
|
}
|
1082
|
self.append(") AND xml_nodes.nodetype = 'TEXT')");
|
1083
|
}
|
1084
|
|
1085
|
if (attributeVector.size() != 0)
|
1086
|
{
|
1087
|
for (int j=0; j<attributeVector.size(); j++)
|
1088
|
{
|
1089
|
String path = (String) attributeVector.elementAt(j);
|
1090
|
if (firstAttribute)
|
1091
|
{
|
1092
|
firstAttribute = false;
|
1093
|
if (!firstElement)
|
1094
|
{
|
1095
|
self.append(" OR ");
|
1096
|
}
|
1097
|
self.append(" (xml_index.nodeid=xml_nodes.nodeid AND ( xml_index.path IN ( ");
|
1098
|
self.append("?");
|
1099
|
values.add(path);
|
1100
|
}
|
1101
|
else
|
1102
|
{
|
1103
|
self.append(", ? ");
|
1104
|
values.add(path);
|
1105
|
}
|
1106
|
}
|
1107
|
self.append(") AND xml_nodes.nodetype = 'ATTRIBUTE'))");
|
1108
|
}
|
1109
|
|
1110
|
|
1111
|
self.append(") AND xml_nodes.docid in (");
|
1112
|
self.append(doclist);
|
1113
|
values.addAll(docListValues);
|
1114
|
self.append(")");
|
1115
|
|
1116
|
}
|
1117
|
|
1118
|
return self.toString();
|
1119
|
}
|
1120
|
|
1121
|
|
1122
|
/**
|
1123
|
* Method to return a String generated after sorting the returnFieldList
|
1124
|
* Vector
|
1125
|
*/
|
1126
|
public String getSortedReturnFieldString(){
|
1127
|
String returnFields = "";
|
1128
|
|
1129
|
// Create a temporary vector and copy returnFieldList into it
|
1130
|
Vector tempVector = new Vector();
|
1131
|
|
1132
|
Iterator it = returnFieldList.iterator();
|
1133
|
while(it.hasNext()){
|
1134
|
tempVector.add(it.next());
|
1135
|
}
|
1136
|
|
1137
|
/*Enumeration attEnum = attributeReturnList.elements();
|
1138
|
while(attEnum.hasMoreElements()){
|
1139
|
Iterator tempIt = ((Vector)attEnum.nextElement()).iterator();
|
1140
|
String rfield = "";
|
1141
|
if(tempIt.hasNext()){
|
1142
|
String element = (String)tempIt.next();
|
1143
|
if(element != null) {
|
1144
|
rfield +=element;
|
1145
|
}
|
1146
|
}
|
1147
|
if(tempIt.hasNext()){
|
1148
|
String attribute = (String)tempIt.next();
|
1149
|
if(attribute != null) {
|
1150
|
rfield = rfield + "@" + attribute;
|
1151
|
}
|
1152
|
}
|
1153
|
tempVector.add(rfield);
|
1154
|
}*/
|
1155
|
|
1156
|
// Sort the temporary vector
|
1157
|
java.util.Collections.sort(tempVector);
|
1158
|
|
1159
|
// Generate the string and return it
|
1160
|
it = tempVector.iterator();
|
1161
|
while(it.hasNext()){
|
1162
|
returnFields = returnFields + it.next() + "|";
|
1163
|
}
|
1164
|
return returnFields;
|
1165
|
}
|
1166
|
|
1167
|
|
1168
|
|
1169
|
|
1170
|
|
1171
|
public static String printRelationSQL(String docid)
|
1172
|
{
|
1173
|
StringBuffer self = new StringBuffer();
|
1174
|
self.append("select subject, relationship, object, subdoctype, ");
|
1175
|
self.append("objdoctype from xml_relation ");
|
1176
|
self.append("where docid like '").append(docid).append("'");
|
1177
|
return self.toString();
|
1178
|
}
|
1179
|
|
1180
|
public static String printGetDocByDoctypeSQL(String docid)
|
1181
|
{
|
1182
|
StringBuffer self = new StringBuffer();
|
1183
|
|
1184
|
self.append("SELECT docid,docname,doctype,");
|
1185
|
self.append("date_created, date_updated ");
|
1186
|
self.append("FROM xml_documents WHERE docid IN (");
|
1187
|
self.append(docid).append(")");
|
1188
|
return self.toString();
|
1189
|
}
|
1190
|
|
1191
|
/**
|
1192
|
* create a String description of the query that this instance represents.
|
1193
|
* This should become a way to get the XML serialization of the query.
|
1194
|
*/
|
1195
|
public String toString()
|
1196
|
{
|
1197
|
return "meta_file_id=" + meta_file_id + "\n" + query;
|
1198
|
//DOCTITLE attr cleared from the db
|
1199
|
//return "meta_file_id=" + meta_file_id + "\n" +
|
1200
|
//"querytitle=" + querytitle + "\n" + query;
|
1201
|
}
|
1202
|
|
1203
|
/** A method to get rid of attribute part in path expression */
|
1204
|
public static String newPathExpressionWithOutAttribute(String pathExpression)
|
1205
|
{
|
1206
|
if (pathExpression == null) { return null; }
|
1207
|
int index = pathExpression.lastIndexOf(ATTRIBUTESYMBOL);
|
1208
|
String newExpression = null;
|
1209
|
if (index != 0) {
|
1210
|
newExpression = pathExpression.substring(0, index - 1);
|
1211
|
}
|
1212
|
logMetacat.info("QuerySpecification.newPathExpressionWithOutAttribute - The path expression without attributes: "
|
1213
|
+ newExpression);
|
1214
|
return newExpression;
|
1215
|
}
|
1216
|
|
1217
|
/** A method to get attribute name from path */
|
1218
|
public static String getAttributeName(String path)
|
1219
|
{
|
1220
|
if (path == null) { return null; }
|
1221
|
int index = path.lastIndexOf(ATTRIBUTESYMBOL);
|
1222
|
int size = path.length();
|
1223
|
String attributeName = null;
|
1224
|
if (index != 1) {
|
1225
|
attributeName = path.substring(index + 1, size);
|
1226
|
}
|
1227
|
logMetacat.info("QuerySpecification.getAttributeName - The attirbute name from path: " + attributeName);
|
1228
|
return attributeName;
|
1229
|
}
|
1230
|
|
1231
|
}
|