Revision 8710
Added by ben leinfelder over 10 years ago
| src/edu/ucsb/nceas/metacat/annotation/DatapackageSummarizer.java | ||
|---|---|---|
| 100 | 100 |
ObjectProperty hasBodyProperty = m.getObjectProperty(oa + "hasBody"); |
| 101 | 101 |
ObjectProperty hasTargetProperty = m.getObjectProperty(oa + "hasTarget"); |
| 102 | 102 |
ObjectProperty hasSourceProperty = m.getObjectProperty(oa + "hasSource"); |
| 103 |
ObjectProperty hasSelectorProperty = m.getObjectProperty(oa + "hasSelector"); |
|
| 103 | 104 |
ObjectProperty annotatedByProperty = m.getObjectProperty(oa + "annotatedBy"); |
| 104 | 105 |
Property identifierProperty = m.getProperty(dcterms + "identifier"); |
| 106 |
Property conformsToProperty = m.getProperty(dcterms + "conformsTo"); |
|
| 105 | 107 |
Property nameProperty = m.getProperty(foaf + "name"); |
| 108 |
Property rdfValue = m.getProperty(rdf + "value"); |
|
| 106 | 109 |
|
| 107 | 110 |
ObjectProperty ofCharacteristic = m.getObjectProperty(oboe_core + "ofCharacteristic"); |
| 108 | 111 |
ObjectProperty usesStandard = m.getObjectProperty(oboe_core + "usesStandard"); |
| ... | ... | |
| 114 | 117 |
|
| 115 | 118 |
Resource annotationClass = m.getOntClass(oa + "Annotation"); |
| 116 | 119 |
Resource specificResourceClass = m.getOntClass(oa + "SpecificResource"); |
| 120 |
Resource fragmentSelectorClass = m.getOntClass(oa + "FragmentSelector"); |
|
| 117 | 121 |
Resource entityClass = m.getResource(prov + "Entity"); |
| 118 | 122 |
Resource personClass = m.getResource(prov + "Person"); |
| 119 | 123 |
|
| 120 |
int cnt = 0;
|
|
| 124 |
int cnt = 1;
|
|
| 121 | 125 |
|
| 122 | 126 |
// these apply to every attribute annotation |
| 123 | 127 |
Individual meta1 = m.createIndividual(ont.getURI() + "#meta" + cnt, entityClass); |
| ... | ... | |
| 131 | 135 |
String entityName = entity.getName(); |
| 132 | 136 |
logMetacat.debug("Entity name: " + entityName);
|
| 133 | 137 |
Attribute[] attributes = entity.getAttributeList().getAttributes(); |
| 138 |
int attributeCount = 1; |
|
| 134 | 139 |
for (Attribute attribute: attributes) {
|
| 135 | 140 |
|
| 136 | 141 |
String attributeName = attribute.getName(); |
| ... | ... | |
| 161 | 166 |
Individual m1 = m.createIndividual(ont.getURI() + "#measurement" + cnt, measurementClass); |
| 162 | 167 |
Individual a1 = m.createIndividual(ont.getURI() + "#annotation" + cnt, annotationClass); |
| 163 | 168 |
Individual t1 = m.createIndividual(ont.getURI() + "#target" + cnt, specificResourceClass); |
| 169 |
String xpointer = "xpointer(/eml/dataSet/" + cnt + "/attributeList/" + attributeCount + ")"; |
|
| 170 |
Individual s1 = m.createIndividual(ont.getURI() + "#" + xpointer, fragmentSelectorClass); |
|
| 171 |
s1.addLiteral(rdfValue, xpointer); |
|
| 172 |
s1.addProperty(conformsToProperty, "http://www.w3.org/TR/xptr/"); |
|
| 164 | 173 |
|
| 165 | 174 |
// statements about the annotation |
| 166 | 175 |
a1.addProperty(hasBodyProperty, m1); |
| 167 | 176 |
a1.addProperty(hasTargetProperty, t1); |
| 168 | 177 |
t1.addProperty(hasSourceProperty, meta1); |
| 178 |
t1.addProperty(hasSelectorProperty, s1); |
|
| 169 | 179 |
a1.addProperty(annotatedByProperty, p1); |
| 170 | 180 |
|
| 171 | 181 |
// describe the measurement in terms of restrictions |
| ... | ... | |
| 195 | 205 |
private Resource lookupStandard(OntClass standardClass, Attribute attribute) {
|
| 196 | 206 |
// what's our unit? |
| 197 | 207 |
String unit = attribute.getUnit().toLowerCase(); |
| 208 |
List<String> tokens = Arrays.asList(unit.split(" "));
|
|
| 209 |
|
|
| 198 | 210 |
boolean found = false; |
| 199 | 211 |
ExtendedIterator iter = standardClass.listSubClasses(false); |
| 200 | 212 |
if (randomize) {
|
| ... | ... | |
| 208 | 220 |
OntClass subclass = (OntClass) iter.next(); |
| 209 | 221 |
String subclassName = subclass.getLocalName().toLowerCase(); |
| 210 | 222 |
logMetacat.debug("subclass: " + subclassName);
|
| 211 |
if (subclassName.equals(unit)) {
|
|
| 223 |
if (tokens.contains(subclassName)) {
|
|
| 212 | 224 |
found = true; |
| 213 | 225 |
} |
| 214 | 226 |
if (subclass.hasLabel(unit, null)) {
|
| ... | ... | |
| 224 | 236 |
private Resource lookupCharacteristic(OntClass characteristicClass, Attribute attribute) {
|
| 225 | 237 |
// what's our label? |
| 226 | 238 |
String label = attribute.getLabel().toLowerCase(); |
| 239 |
List<String> tokens = Arrays.asList(label.split(" "));
|
|
| 240 |
|
|
| 227 | 241 |
boolean found = false; |
| 228 | 242 |
// find something that matches |
| 229 | 243 |
ExtendedIterator iter = characteristicClass.listSubClasses(); |
| ... | ... | |
| 238 | 252 |
OntClass subclass = (OntClass) iter.next(); |
| 239 | 253 |
String subclassName = subclass.getLocalName().toLowerCase(); |
| 240 | 254 |
logMetacat.debug("subclass: " + subclassName);
|
| 241 |
if (subclassName.equals(label)) {
|
|
| 255 |
if (tokens.contains(subclassName)) {
|
|
| 242 | 256 |
found = true; |
| 243 | 257 |
} |
| 244 | 258 |
if (subclass.hasLabel(label, null)) {
|
Also available in: Unified diff
Add xpointer FragmentSelectors to each annotation.
Split attribute label into tokens to attempt matching to OBOE concepts.