Metacat

/**  '$RCSfile$'

 *  Copyright: 2010 Regents of the University of California and the

 *              National Center for Ecological Analysis and Synthesis

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.metacat.annotation;

import com.hp.hpl.jena.ontology.OntClass;

import com.hp.hpl.jena.ontology.OntModel;

import com.hp.hpl.jena.rdf.model.ModelFactory;

import com.hp.hpl.jena.rdf.model.Resource;

import junit.framework.Test;

import junit.framework.TestSuite;

import edu.ucsb.nceas.MCTestCase;

public class BioPortalServiceTest extends MCTestCase {

	/**

	 * constructor for the test

	 */

	public BioPortalServiceTest(String name) {

		super(name);

	}

	/**

	 * Establish a testing framework by initializing appropriate objects

	 */

	public void setUp() throws Exception {

		super.setUp();

	}

	/**

	 * Release any objects after tests are complete

	 */

	public void tearDown() {

	}

	/**

	 * Create a suite of tests to be run together

	 */

	public static Test suite() {

		TestSuite suite = new TestSuite();

		suite.addTest(new BioPortalServiceTest("testLookup"));

		return suite;

	}

	public void testLookup() {

		// set up our simple model for testing: Characteristic <- Temperature

		OntModel m = ModelFactory.createOntologyModel();

		OntClass characteristicClass = m.createClass(DatapackageSummarizer.oboe_core + "Characteristic");

		OntClass temperatureClass = m.createClass(DatapackageSummarizer.oboe_characteristics + "Temperature");

		temperatureClass.addSuperClass(characteristicClass);

		// look up the annotation recommendation from BioPortal

		String text = "Air temperature";

		Resource retClass = BioPortalService.lookupAnnotationClass(characteristicClass, text, DatapackageSummarizer.OBOE_SBC);

		assertEquals(DatapackageSummarizer.oboe_characteristics + "Temperature", retClass.getURI());

	}

}

	public static String oboe_characteristics = "http://ecoinformatics.org/oboe/oboe.1.0/oboe-characteristics.owl#";

	public static String OBOE_SBC = "OBOE-SBC";

		return BioPortalService.lookupAnnotationClass(standardClass, unit, OBOE_SBC);

		return BioPortalService.lookupAnnotationClass(characteristicClass, attribute.getDefinition(), OBOE_SBC);

	public static Resource lookupAnnotationClass(OntClass superClass, String text, String ontologies) {

			if (ontologies != null) {

				urlParameters += "&ontologies=" + ontologies;

			}