Metacat

	public static String oboe_sbc = "http://ecoinformatics.org/oboe-ext/sbclter.1.0/oboe-sbclter.owl#";

		ont.addImport(m.createResource(oboe_sbc));

		m.addSubModel(ModelFactory.createOntologyModel().read(oboe_sbc));

		if (entities != null) {

			for (Entity entity: entities) {

				String entityName = entity.getName();

				logMetacat.debug("Entity name: " + entityName);

				Attribute[] attributes = entity.getAttributeList().getAttributes();

				int attributeCount = 1;

				if (attributes != null) {

					for (Attribute attribute: attributes) {

						// for naming the individuals uniquely

						String cnt = entityCount + "_" + attributeCount;

						String attributeName = attribute.getName();

						String attributeLabel = attribute.getLabel();

						String attributeDefinition = attribute.getDefinition();

						String attributeType = attribute.getAttributeType();

						String attributeScale = attribute.getMeasurementScale();

						String attributeUnitType = attribute.getUnitType();

						String attributeUnit = attribute.getUnit();

						String attributeDomain = attribute.getDomain().getClass().getSimpleName();

						logMetacat.debug("Attribute name: " + attributeName);

						logMetacat.debug("Attribute label: " + attributeLabel);

						logMetacat.debug("Attribute definition: " + attributeDefinition);

						logMetacat.debug("Attribute type: " + attributeType);

						logMetacat.debug("Attribute scale: " + attributeScale);

						logMetacat.debug("Attribute unit type: " + attributeUnitType);

						logMetacat.debug("Attribute unit: " + attributeUnit);

						logMetacat.debug("Attribute domain: " + attributeDomain);

						// look up the characteristic or standard subclasses

						Resource standard = this.lookupStandard(standardClass, attribute);

						Resource characteristic = this.lookupCharacteristic(characteristicClass, attribute);

						if (standard != null || characteristic != null) {

							// instances

							Individual m1 = m.createIndividual(ont.getURI() + "#measurement" + cnt, measurementClass);

							Individual a1 = m.createIndividual(ont.getURI() + "#annotation" + cnt, annotationClass);

							Individual t1 = m.createIndividual(ont.getURI() + "#target" + cnt, specificResourceClass);

							String xpointer = "xpointer(/eml/dataSet/" + entityCount + "/attributeList/" + attributeCount + ")";

							Individual s1 = m.createIndividual(ont.getURI() + "#" + xpointer, fragmentSelectorClass);

							s1.addLiteral(rdfValue, xpointer);

							s1.addProperty(conformsToProperty, "http://www.w3.org/TR/xptr/");

							// statements about the annotation

							a1.addProperty(hasBodyProperty, m1);

							a1.addProperty(hasTargetProperty, t1);

							t1.addProperty(hasSourceProperty, meta1);

							t1.addProperty(hasSelectorProperty, s1);

							//a1.addProperty(annotatedByProperty, p1);

							// describe the measurement in terms of restrictions

							if (standard != null) {

								AllValuesFromRestriction avfr = m.createAllValuesFromRestriction(null, usesStandard, standard);

								m1.addOntClass(avfr);

							}

							if (characteristic != null) {

								AllValuesFromRestriction avfr = m.createAllValuesFromRestriction(null, ofCharacteristic, characteristic);

								m1.addOntClass(avfr);

							}

						}

						attributeCount++;

				entityCount++;