1 |
7190
|
leinfelder
|
-- use default values initially
|
2 |
7191
|
leinfelder
|
CREATE TABLE doi_registration AS
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3 |
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4 |
7189
|
leinfelder
|
select
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5 |
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text('testing') as ezid_account,
|
6 |
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doc.doctype,
|
7 |
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id.guid,
|
8 |
7284
|
leinfelder
|
'https://cn.dataone.org/cn/v1/resolve/' || regexp_replace(regexp_replace(id.guid, '/', '%2F', 'g'), ':', '%3A', 'g') as url,
|
9 |
7190
|
leinfelder
|
text('Unknown') as title,
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10 |
7191
|
leinfelder
|
text(null) as creator,
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11 |
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text(null) as publisher,
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12 |
7190
|
leinfelder
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to_char(doc.date_created, 'YYYY') as pub_date
|
13 |
7189
|
leinfelder
|
from identifier id, xml_documents doc
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14 |
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where guid like 'doi%'
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15 |
7191
|
leinfelder
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and id.docid = doc.docid
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16 |
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and id.rev = doc.rev
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17 |
7189
|
leinfelder
|
|
18 |
7191
|
leinfelder
|
UNION ALL
|
19 |
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|
20 |
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select
|
21 |
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text('testing') as ezid_account,
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22 |
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doc.doctype,
|
23 |
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id.guid,
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24 |
7284
|
leinfelder
|
'https://cn.dataone.org/cn/v1/resolve/' || regexp_replace(regexp_replace(id.guid, '/', '%2F', 'g'), ':', '%3A', 'g') as url,
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25 |
7191
|
leinfelder
|
text('Unknown') as title,
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26 |
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text(null) as creator,
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27 |
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text(null) as publisher,
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28 |
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to_char(doc.date_created, 'YYYY') as pub_date
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29 |
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from identifier id, xml_revisions doc
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30 |
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where guid like 'doi%'
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31 |
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and id.docid = doc.docid
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32 |
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and id.rev = doc.rev;
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33 |
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34 |
7190
|
leinfelder
|
--update defaults
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35 |
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update doi_registration
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36 |
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set title = 'Data file'
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37 |
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where doctype = 'BIN';
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38 |
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39 |
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update doi_registration
|
40 |
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set title = 'Legacy EML file'
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41 |
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where doctype like '%eml%2.0.0beta%';
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42 |
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|
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43 |
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-- update title using node information
|
44 |
7189
|
leinfelder
|
update doi_registration doi
|
45 |
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set title = child.nodedata
|
46 |
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from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
|
47 |
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where doi.guid = id.guid
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48 |
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and id.docid = docs.docid
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49 |
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and id.rev = docs.rev
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50 |
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and docs.rootnodeid = nodes.rootnodeid
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51 |
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and nodes.nodeid = child.parentnodeid
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52 |
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and nodes.parentnodeid = parent.nodeid
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53 |
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and nodes.nodename = 'title'
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54 |
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and parent.nodename = 'dataset';
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55 |
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|
|
56 |
7191
|
leinfelder
|
-- update pubDate using nodes
|
57 |
7190
|
leinfelder
|
update doi_registration doi
|
58 |
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set pub_date = child.nodedata
|
59 |
|
|
from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
|
60 |
|
|
where doi.guid = id.guid
|
61 |
|
|
and id.docid = docs.docid
|
62 |
|
|
and id.rev = docs.rev
|
63 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
64 |
|
|
and nodes.nodeid = child.parentnodeid
|
65 |
|
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and nodes.parentnodeid = parent.nodeid
|
66 |
|
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and nodes.nodename = 'pubDate'
|
67 |
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and parent.nodename = 'dataset';
|
68 |
|
|
|
69 |
7191
|
leinfelder
|
-- update publisher using nodes
|
70 |
7190
|
leinfelder
|
update doi_registration doi
|
71 |
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set publisher = child.nodedata
|
72 |
|
|
from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
|
73 |
|
|
where doi.guid = id.guid
|
74 |
|
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and id.docid = docs.docid
|
75 |
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and id.rev = docs.rev
|
76 |
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and docs.rootnodeid = nodes.rootnodeid
|
77 |
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and nodes.nodeid = child.parentnodeid
|
78 |
|
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and nodes.parentnodeid = parent.nodeid
|
79 |
7324
|
leinfelder
|
and nodes.nodename = 'organizationName'
|
80 |
|
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and parent.nodename = 'publisher'
|
81 |
|
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and nodes.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = parent.nodeid and nodetype = 'ELEMENT');
|
82 |
7190
|
leinfelder
|
|
83 |
7324
|
leinfelder
|
-- update publisher surName
|
84 |
|
|
update doi_registration doi
|
85 |
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|
set publisher = child.nodedata
|
86 |
|
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from identifier id,
|
87 |
|
|
xml_documents docs,
|
88 |
|
|
xml_nodes nodes,
|
89 |
|
|
xml_nodes parent,
|
90 |
|
|
xml_nodes child,
|
91 |
|
|
xml_nodes grandparent
|
92 |
|
|
where doi.guid = id.guid
|
93 |
|
|
and id.docid = docs.docid
|
94 |
|
|
and id.rev = docs.rev
|
95 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
96 |
|
|
and nodes.nodeid = child.parentnodeid
|
97 |
|
|
and nodes.parentnodeid = parent.nodeid
|
98 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
99 |
|
|
and nodes.nodename = 'surName'
|
100 |
|
|
and parent.nodename = 'individualName'
|
101 |
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and grandparent.nodename = 'publisher'
|
102 |
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|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
103 |
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|
|
104 |
|
|
-- add the first name if we have it
|
105 |
|
|
update doi_registration doi
|
106 |
7361
|
leinfelder
|
set publisher = publisher ||', '|| child.nodedata
|
107 |
7324
|
leinfelder
|
from identifier id,
|
108 |
|
|
xml_documents docs,
|
109 |
|
|
xml_nodes nodes,
|
110 |
|
|
xml_nodes parent,
|
111 |
|
|
xml_nodes child,
|
112 |
|
|
xml_nodes grandparent
|
113 |
|
|
where doi.guid = id.guid
|
114 |
|
|
and id.docid = docs.docid
|
115 |
|
|
and id.rev = docs.rev
|
116 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
117 |
|
|
and nodes.nodeid = child.parentnodeid
|
118 |
|
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and nodes.parentnodeid = parent.nodeid
|
119 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
120 |
|
|
and nodes.nodename = 'givenName'
|
121 |
|
|
and parent.nodename = 'individualName'
|
122 |
|
|
and grandparent.nodename = 'publisher'
|
123 |
|
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
124 |
|
|
|
125 |
7191
|
leinfelder
|
-- update organization using nodes
|
126 |
|
|
update doi_registration doi
|
127 |
|
|
set creator = child.nodedata
|
128 |
|
|
from identifier id, xml_documents docs, xml_nodes nodes, xml_nodes parent, xml_nodes child
|
129 |
|
|
where doi.guid = id.guid
|
130 |
|
|
and id.docid = docs.docid
|
131 |
|
|
and id.rev = docs.rev
|
132 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
133 |
|
|
and nodes.nodeid = child.parentnodeid
|
134 |
|
|
and nodes.parentnodeid = parent.nodeid
|
135 |
|
|
and nodes.nodename = 'organizationName'
|
136 |
|
|
and parent.nodename = 'creator'
|
137 |
|
|
and nodes.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = parent.nodeid and nodetype = 'ELEMENT');
|
138 |
|
|
|
139 |
7189
|
leinfelder
|
-- update creator using nodes
|
140 |
|
|
-- creator/individualName/surName
|
141 |
|
|
-- creator/individualName/givenName
|
142 |
|
|
update doi_registration doi
|
143 |
7191
|
leinfelder
|
set creator = child.nodedata
|
144 |
7189
|
leinfelder
|
from identifier id,
|
145 |
|
|
xml_documents docs,
|
146 |
|
|
xml_nodes nodes,
|
147 |
|
|
xml_nodes parent,
|
148 |
|
|
xml_nodes child,
|
149 |
7191
|
leinfelder
|
xml_nodes grandparent
|
150 |
7189
|
leinfelder
|
where doi.guid = id.guid
|
151 |
|
|
and id.docid = docs.docid
|
152 |
|
|
and id.rev = docs.rev
|
153 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
154 |
|
|
and nodes.nodeid = child.parentnodeid
|
155 |
|
|
and nodes.parentnodeid = parent.nodeid
|
156 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
157 |
|
|
and nodes.nodename = 'surName'
|
158 |
|
|
and parent.nodename = 'individualName'
|
159 |
|
|
and grandparent.nodename = 'creator'
|
160 |
7191
|
leinfelder
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
161 |
7189
|
leinfelder
|
|
162 |
7191
|
leinfelder
|
-- add the first name if we have it
|
163 |
|
|
update doi_registration doi
|
164 |
7361
|
leinfelder
|
set creator = creator ||', '|| child.nodedata
|
165 |
7191
|
leinfelder
|
from identifier id,
|
166 |
|
|
xml_documents docs,
|
167 |
|
|
xml_nodes nodes,
|
168 |
|
|
xml_nodes parent,
|
169 |
|
|
xml_nodes child,
|
170 |
|
|
xml_nodes grandparent
|
171 |
|
|
where doi.guid = id.guid
|
172 |
|
|
and id.docid = docs.docid
|
173 |
|
|
and id.rev = docs.rev
|
174 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
175 |
|
|
and nodes.nodeid = child.parentnodeid
|
176 |
|
|
and nodes.parentnodeid = parent.nodeid
|
177 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
178 |
|
|
and nodes.nodename = 'givenName'
|
179 |
|
|
and parent.nodename = 'individualName'
|
180 |
|
|
and grandparent.nodename = 'creator'
|
181 |
|
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
182 |
7189
|
leinfelder
|
|
183 |
|
|
-- update title using revisions
|
184 |
|
|
update doi_registration doi
|
185 |
|
|
set title = child.nodedata
|
186 |
|
|
from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
|
187 |
|
|
where doi.guid = id.guid
|
188 |
|
|
and id.docid = docs.docid
|
189 |
|
|
and id.rev = docs.rev
|
190 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
191 |
|
|
and nodes.nodeid = child.parentnodeid
|
192 |
|
|
and nodes.parentnodeid = parent.nodeid
|
193 |
|
|
and nodes.nodename = 'title'
|
194 |
|
|
and parent.nodename = 'dataset';
|
195 |
|
|
|
196 |
7190
|
leinfelder
|
-- update pubDate using revisions
|
197 |
|
|
update doi_registration doi
|
198 |
|
|
set pub_date = child.nodedata
|
199 |
|
|
from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
|
200 |
|
|
where doi.guid = id.guid
|
201 |
|
|
and id.docid = docs.docid
|
202 |
|
|
and id.rev = docs.rev
|
203 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
204 |
|
|
and nodes.nodeid = child.parentnodeid
|
205 |
|
|
and nodes.parentnodeid = parent.nodeid
|
206 |
|
|
and nodes.nodename = 'pubDate'
|
207 |
|
|
and parent.nodename = 'dataset';
|
208 |
7189
|
leinfelder
|
|
209 |
7190
|
leinfelder
|
-- update publisher using revisions
|
210 |
|
|
update doi_registration doi
|
211 |
|
|
set publisher = child.nodedata
|
212 |
|
|
from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
|
213 |
|
|
where doi.guid = id.guid
|
214 |
|
|
and id.docid = docs.docid
|
215 |
|
|
and id.rev = docs.rev
|
216 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
217 |
|
|
and nodes.nodeid = child.parentnodeid
|
218 |
|
|
and nodes.parentnodeid = parent.nodeid
|
219 |
7324
|
leinfelder
|
and nodes.nodename = 'organizationName'
|
220 |
|
|
and parent.nodename = 'publisher'
|
221 |
|
|
and nodes.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = parent.nodeid and nodetype = 'ELEMENT');
|
222 |
7190
|
leinfelder
|
|
223 |
7324
|
leinfelder
|
-- use publisher individual name if we have it
|
224 |
|
|
update doi_registration doi
|
225 |
|
|
set publisher = child.nodedata
|
226 |
|
|
from identifier id,
|
227 |
|
|
xml_revisions docs,
|
228 |
|
|
xml_nodes_revisions nodes,
|
229 |
|
|
xml_nodes_revisions parent,
|
230 |
|
|
xml_nodes_revisions child,
|
231 |
|
|
xml_nodes_revisions grandparent
|
232 |
|
|
where doi.guid = id.guid
|
233 |
|
|
and id.docid = docs.docid
|
234 |
|
|
and id.rev = docs.rev
|
235 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
236 |
|
|
and nodes.nodeid = child.parentnodeid
|
237 |
|
|
and nodes.parentnodeid = parent.nodeid
|
238 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
239 |
|
|
and nodes.nodename = 'surName'
|
240 |
|
|
and parent.nodename = 'individualName'
|
241 |
|
|
and grandparent.nodename = 'publisher'
|
242 |
|
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
243 |
|
|
|
244 |
|
|
--include the first name (careful not to rerun this part)
|
245 |
|
|
update doi_registration doi
|
246 |
7361
|
leinfelder
|
set publisher = publisher ||', '|| child.nodedata
|
247 |
7324
|
leinfelder
|
from identifier id,
|
248 |
|
|
xml_revisions docs,
|
249 |
|
|
xml_nodes_revisions nodes,
|
250 |
|
|
xml_nodes_revisions parent,
|
251 |
|
|
xml_nodes_revisions child,
|
252 |
|
|
xml_nodes_revisions grandparent
|
253 |
|
|
where doi.guid = id.guid
|
254 |
|
|
and id.docid = docs.docid
|
255 |
|
|
and id.rev = docs.rev
|
256 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
257 |
|
|
and nodes.nodeid = child.parentnodeid
|
258 |
|
|
and nodes.parentnodeid = parent.nodeid
|
259 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
260 |
|
|
and nodes.nodename = 'givenName'
|
261 |
|
|
and parent.nodename = 'individualName'
|
262 |
|
|
and grandparent.nodename = 'publisher'
|
263 |
|
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
264 |
|
|
|
265 |
7191
|
leinfelder
|
-- update organization using nodes
|
266 |
|
|
update doi_registration doi
|
267 |
|
|
set creator = child.nodedata
|
268 |
|
|
from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
|
269 |
|
|
where doi.guid = id.guid
|
270 |
|
|
and id.docid = docs.docid
|
271 |
|
|
and id.rev = docs.rev
|
272 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
273 |
|
|
and nodes.nodeid = child.parentnodeid
|
274 |
|
|
and nodes.parentnodeid = parent.nodeid
|
275 |
|
|
and nodes.nodename = 'organizationName'
|
276 |
|
|
and parent.nodename = 'creator'
|
277 |
|
|
and nodes.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = parent.nodeid and nodetype = 'ELEMENT');
|
278 |
7190
|
leinfelder
|
|
279 |
7189
|
leinfelder
|
-- update creator using revisions
|
280 |
|
|
update doi_registration doi
|
281 |
7191
|
leinfelder
|
set creator = child.nodedata
|
282 |
7189
|
leinfelder
|
from identifier id,
|
283 |
|
|
xml_revisions docs,
|
284 |
|
|
xml_nodes_revisions nodes,
|
285 |
|
|
xml_nodes_revisions parent,
|
286 |
|
|
xml_nodes_revisions child,
|
287 |
7191
|
leinfelder
|
xml_nodes_revisions grandparent
|
288 |
7189
|
leinfelder
|
where doi.guid = id.guid
|
289 |
|
|
and id.docid = docs.docid
|
290 |
|
|
and id.rev = docs.rev
|
291 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
292 |
|
|
and nodes.nodeid = child.parentnodeid
|
293 |
|
|
and nodes.parentnodeid = parent.nodeid
|
294 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
295 |
|
|
and nodes.nodename = 'surName'
|
296 |
|
|
and parent.nodename = 'individualName'
|
297 |
|
|
and grandparent.nodename = 'creator'
|
298 |
7191
|
leinfelder
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
299 |
7189
|
leinfelder
|
|
300 |
7191
|
leinfelder
|
-- add the first name if we have it
|
301 |
|
|
update doi_registration doi
|
302 |
7361
|
leinfelder
|
set creator = creator ||', '|| child.nodedata
|
303 |
7191
|
leinfelder
|
from identifier id,
|
304 |
|
|
xml_revisions docs,
|
305 |
|
|
xml_nodes_revisions nodes,
|
306 |
|
|
xml_nodes_revisions parent,
|
307 |
|
|
xml_nodes_revisions child,
|
308 |
|
|
xml_nodes_revisions grandparent
|
309 |
|
|
where doi.guid = id.guid
|
310 |
|
|
and id.docid = docs.docid
|
311 |
|
|
and id.rev = docs.rev
|
312 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
313 |
|
|
and nodes.nodeid = child.parentnodeid
|
314 |
|
|
and nodes.parentnodeid = parent.nodeid
|
315 |
|
|
and parent.parentnodeid = grandparent.nodeid
|
316 |
|
|
and nodes.nodename = 'givenName'
|
317 |
|
|
and parent.nodename = 'individualName'
|
318 |
|
|
and grandparent.nodename = 'creator'
|
319 |
|
|
and parent.nodeid = (select min(thisnode.nodeid) from xml_nodes_revisions thisnode where thisnode.parentnodeid = grandparent.nodeid and nodetype = 'ELEMENT');
|
320 |
|
|
|
321 |
|
|
-- use xml_documents for defaults that are still missing
|
322 |
|
|
update doi_registration doi
|
323 |
|
|
set creator = doc.user_owner
|
324 |
|
|
from xml_documents doc, identifier id
|
325 |
|
|
where doi.guid = id.guid
|
326 |
|
|
and id.docid = doc.docid
|
327 |
|
|
and id.rev = doc.rev
|
328 |
|
|
and doi.creator is null;
|
329 |
|
|
|
330 |
|
|
update doi_registration doi
|
331 |
|
|
set creator = doc.user_owner
|
332 |
|
|
from xml_revisions doc, identifier id
|
333 |
|
|
where doi.guid = id.guid
|
334 |
|
|
and id.docid = doc.docid
|
335 |
|
|
and id.rev = doc.rev
|
336 |
|
|
and doi.creator is null;
|
337 |
|
|
|
338 |
|
|
-- set publisher
|
339 |
|
|
update doi_registration
|
340 |
|
|
set publisher = creator
|
341 |
|
|
where publisher is null or publisher = '';
|
342 |
|
|
|
343 |
7189
|
leinfelder
|
-- clean up
|
344 |
|
|
update doi_registration
|
345 |
|
|
set title = replace(title, E'\n', ' ');
|
346 |
|
|
|
347 |
7190
|
leinfelder
|
update doi_registration
|
348 |
7193
|
leinfelder
|
set title = regexp_replace(title, E'\\s+', ' ', 'g');
|
349 |
7190
|
leinfelder
|
|
350 |
|
|
update doi_registration
|
351 |
7193
|
leinfelder
|
set title = regexp_replace(title, E'^\\s+', '', 'g');
|
352 |
7190
|
leinfelder
|
|
353 |
7288
|
leinfelder
|
update doi_registration
|
354 |
7336
|
leinfelder
|
set ezid_account = 'sb_nceas'
|
355 |
7288
|
leinfelder
|
where guid like 'doi:10.5063%';
|
356 |
|
|
--16988
|
357 |
|
|
|
358 |
|
|
update doi_registration
|
359 |
7336
|
leinfelder
|
set ezid_account = 'sb_pisco'
|
360 |
7288
|
leinfelder
|
where guid like 'doi:10.6085%';
|
361 |
|
|
--98078
|
362 |
|
|
|
363 |
|
|
update doi_registration
|
364 |
7336
|
leinfelder
|
set ezid_account = 'lternet'
|
365 |
7288
|
leinfelder
|
where guid like 'doi:10.6073%';
|
366 |
|
|
--49482
|
367 |
|
|
|
368 |
7290
|
leinfelder
|
/**
|
369 |
|
|
* Additional modifications, July 5th, 2012
|
370 |
|
|
*/
|
371 |
|
|
ALTER TABLE doi_registration
|
372 |
|
|
ADD COLUMN resourceType text,
|
373 |
|
|
ADD COLUMN objectFormat text,
|
374 |
|
|
ADD COLUMN obsoletedBy text,
|
375 |
|
|
ADD COLUMN obsoletes text,
|
376 |
|
|
ADD COLUMN resourceMapId text,
|
377 |
|
|
ADD COLUMN resourceMapLocation text,
|
378 |
|
|
ADD COLUMN access text;
|
379 |
|
|
|
380 |
|
|
-- update access values
|
381 |
|
|
update doi_registration
|
382 |
|
|
set access = 'protected';
|
383 |
|
|
|
384 |
|
|
update doi_registration doi
|
385 |
|
|
set access = 'public'
|
386 |
|
|
from xml_access a
|
387 |
|
|
where doi.guid = a.guid
|
388 |
|
|
and a.principal_name = 'public'
|
389 |
|
|
and a.permission >= '4'
|
390 |
|
|
and a.perm_type = 'allow';
|
391 |
|
|
|
392 |
|
|
-- update the objectFormat from xml_documents
|
393 |
|
|
update doi_registration doi
|
394 |
|
|
set objectFormat = doc.doctype
|
395 |
|
|
from identifier id, xml_documents doc
|
396 |
|
|
where doi.guid = id.guid
|
397 |
7327
|
leinfelder
|
and id.docid = doc.docid
|
398 |
|
|
and id.rev = doc.rev;
|
399 |
7290
|
leinfelder
|
|
400 |
|
|
-- update the objectFormat from xml_revisions
|
401 |
|
|
update doi_registration doi
|
402 |
|
|
set objectFormat = rev.doctype
|
403 |
|
|
from identifier id, xml_revisions rev
|
404 |
|
|
where doi.guid = id.guid
|
405 |
7327
|
leinfelder
|
and id.docid = rev.docid
|
406 |
|
|
and id.rev = rev.rev;
|
407 |
7290
|
leinfelder
|
|
408 |
|
|
--update resourceType
|
409 |
|
|
update doi_registration
|
410 |
7364
|
leinfelder
|
set resourceType = 'Dataset/metadata';
|
411 |
7290
|
leinfelder
|
|
412 |
|
|
update doi_registration
|
413 |
7364
|
leinfelder
|
set resourceType = 'Dataset/data'
|
414 |
7290
|
leinfelder
|
where objectFormat = 'BIN';
|
415 |
|
|
|
416 |
7360
|
leinfelder
|
-- update the data file titles
|
417 |
|
|
update doi_registration doi
|
418 |
|
|
set title = 'Data file - ' || doc.docname
|
419 |
|
|
from identifier id, xml_documents doc
|
420 |
|
|
where doi.guid = id.guid
|
421 |
|
|
and id.docid = doc.docid
|
422 |
|
|
and id.rev = doc.rev
|
423 |
7364
|
leinfelder
|
and doi.resourceType = 'Dataset/data';
|
424 |
7360
|
leinfelder
|
|
425 |
|
|
-- update the data file titles from revisions
|
426 |
|
|
update doi_registration doi
|
427 |
|
|
set title = 'Data file - ' || doc.docname
|
428 |
|
|
from identifier id, xml_revisions doc
|
429 |
|
|
where doi.guid = id.guid
|
430 |
|
|
and id.docid = doc.docid
|
431 |
|
|
and id.rev = doc.rev
|
432 |
7364
|
leinfelder
|
and doi.resourceType = 'Dataset/data';
|
433 |
7360
|
leinfelder
|
|
434 |
7290
|
leinfelder
|
-- update the objectFormat from SM table (will be subset)
|
435 |
|
|
update doi_registration doi
|
436 |
|
|
set objectFormat = sm.object_format
|
437 |
|
|
from systemMetadata sm
|
438 |
|
|
where doi.guid = sm.guid;
|
439 |
|
|
--16938
|
440 |
|
|
|
441 |
|
|
--update revision history from SM
|
442 |
|
|
update doi_registration doi
|
443 |
|
|
set obsoletes = sm.obsoletes,
|
444 |
|
|
obsoletedBy = sm.obsoleted_by
|
445 |
|
|
from systemMetadata sm
|
446 |
|
|
where doi.guid = sm.guid;
|
447 |
|
|
|
448 |
7303
|
leinfelder
|
/** use plain old revision history **/
|
449 |
|
|
-- update obsoletedby
|
450 |
|
|
update doi_registration doi
|
451 |
|
|
set obsoletedBy = newer.guid
|
452 |
|
|
from identifier id, identifier newer
|
453 |
|
|
where doi.guid = id.guid
|
454 |
|
|
and id.docid = newer.docid
|
455 |
|
|
and newer.rev = (select min(next.rev) from identifier next where next.docid = id.docid and next.rev > id.rev);
|
456 |
|
|
|
457 |
|
|
-- update the obsolets
|
458 |
|
|
update doi_registration doi
|
459 |
|
|
set obsoletes = older.guid
|
460 |
|
|
from identifier id, identifier older
|
461 |
|
|
where doi.guid = id.guid
|
462 |
|
|
and id.docid = older.docid
|
463 |
|
|
and older.rev = (select max(prev.rev) from identifier prev where prev.docid = id.docid and prev.rev < id.rev);
|
464 |
|
|
|
465 |
|
|
/**
|
466 |
|
|
select doi.guid, older.guid as obsoletes
|
467 |
|
|
from doi_registration doi, identifier id, identifier older
|
468 |
|
|
where doi.guid = id.guid
|
469 |
|
|
and id.docid = older.docid
|
470 |
|
|
and older.rev = (select max(prev.rev) from identifier prev where prev.docid = id.docid and prev.rev < id.rev)
|
471 |
|
|
and doi.guid like 'doi:10.5063/AA/ABS.4%';
|
472 |
|
|
**/
|
473 |
|
|
|
474 |
|
|
|
475 |
7290
|
leinfelder
|
--update the resourcemapid for described data
|
476 |
|
|
CREATE TABLE ecogrid_docids AS
|
477 |
|
|
select distinct id.docid, id.rev, id.guid, substring(xpi.nodedata from 'ecogrid://knb/(.*)$') as data_docid
|
478 |
|
|
from xml_path_index xpi, identifier id, xml_documents xmld
|
479 |
|
|
where xpi.docid = xmld.docid
|
480 |
|
|
and xmld.docid = id.docid
|
481 |
|
|
and xmld.rev = id.rev
|
482 |
|
|
and xpi.path like 'dataset/%/physical/distribution/online/url'
|
483 |
7303
|
leinfelder
|
and xpi.nodedata like 'ecogrid%'
|
484 |
|
|
and id.guid in (select guid from doi_registration);
|
485 |
7290
|
leinfelder
|
|
486 |
7303
|
leinfelder
|
-- include revisions for described data
|
487 |
|
|
INSERT INTO ecogrid_docids
|
488 |
|
|
select distinct id.docid, id.rev, id.guid, substring(child.nodedata from 'ecogrid://knb/(.*)$') as data_docid
|
489 |
|
|
from identifier id, xml_revisions docs, xml_nodes_revisions nodes, xml_nodes_revisions parent, xml_nodes_revisions child
|
490 |
|
|
where id.docid = docs.docid
|
491 |
|
|
and id.rev = docs.rev
|
492 |
|
|
and docs.rootnodeid = nodes.rootnodeid
|
493 |
|
|
and nodes.nodeid = child.parentnodeid
|
494 |
|
|
and nodes.parentnodeid = parent.nodeid
|
495 |
|
|
and nodes.nodename = 'url'
|
496 |
|
|
and parent.nodename = 'online'
|
497 |
|
|
and child.nodedata like 'ecogrid%'
|
498 |
|
|
and child.nodetype = 'TEXT'
|
499 |
|
|
and id.guid in (select guid from doi_registration);
|
500 |
7290
|
leinfelder
|
|
501 |
7321
|
leinfelder
|
-- Set the resource map for the data files (NOTE: some of thee maps might not actually exist on the system depending on how successful the ORE generation was)
|
502 |
7290
|
leinfelder
|
update doi_registration doi
|
503 |
|
|
set resourceMapId = 'resourceMap_'||eco.docid||'.'||eco.rev
|
504 |
|
|
from identifier id, ecogrid_docids eco
|
505 |
|
|
where doi.guid = id.guid
|
506 |
|
|
and id.docid||'.'||id.rev = eco.data_docid;
|
507 |
|
|
|
508 |
7321
|
leinfelder
|
-- set the resource map id for the metadata file that did most of the packaging work!
|
509 |
|
|
update doi_registration doi
|
510 |
|
|
set resourceMapId = 'resourceMap_'||eco.docid||'.'||eco.rev
|
511 |
|
|
from ecogrid_docids eco
|
512 |
|
|
where doi.guid = eco.guid;
|
513 |
|
|
|
514 |
7303
|
leinfelder
|
select count(*)
|
515 |
|
|
from doi_registration
|
516 |
|
|
where resourceMapId is null;
|
517 |
|
|
|
518 |
7290
|
leinfelder
|
--update the resource map location
|
519 |
|
|
update doi_registration
|
520 |
|
|
set resourceMapLocation = 'https://cn.dataone.org/cn/v1/resolve/' || resourceMapId
|
521 |
|
|
where resourceMapId is not null;
|
522 |
|
|
|
523 |
7306
|
leinfelder
|
-- fix null values (should not have to have this now, but it will not hurt)
|
524 |
|
|
update doi_registration doi
|
525 |
|
|
set creator = user_owner
|
526 |
|
|
from identifier id, xml_documents docs
|
527 |
|
|
where doi.guid = id.guid
|
528 |
|
|
and id.docid = docs.docid
|
529 |
|
|
and id.rev= docs.rev
|
530 |
7324
|
leinfelder
|
and (creator is null or trim(creator) = '');
|
531 |
7306
|
leinfelder
|
|
532 |
|
|
update doi_registration doi
|
533 |
|
|
set publisher = user_owner
|
534 |
|
|
from identifier id, xml_documents docs
|
535 |
|
|
where doi.guid = id.guid
|
536 |
|
|
and id.docid = docs.docid
|
537 |
|
|
and id.rev= docs.rev
|
538 |
7324
|
leinfelder
|
and (publisher is null or trim(publisher) = '');
|
539 |
7306
|
leinfelder
|
|
540 |
|
|
update doi_registration doi
|
541 |
|
|
set creator = user_owner
|
542 |
|
|
from identifier id, xml_revisions docs
|
543 |
|
|
where doi.guid = id.guid
|
544 |
|
|
and id.docid = docs.docid
|
545 |
|
|
and id.rev= docs.rev
|
546 |
7324
|
leinfelder
|
and (creator is null or trim(creator) = '');
|
547 |
7306
|
leinfelder
|
|
548 |
|
|
update doi_registration doi
|
549 |
|
|
set publisher = user_owner
|
550 |
|
|
from identifier id, xml_revisions docs
|
551 |
|
|
where doi.guid = id.guid
|
552 |
|
|
and id.docid = docs.docid
|
553 |
|
|
and id.rev= docs.rev
|
554 |
7324
|
leinfelder
|
and (publisher is null or trim(publisher) = '');
|
555 |
7306
|
leinfelder
|
|
556 |
7324
|
leinfelder
|
-- fix a previous mistake
|
557 |
|
|
update doi_registration
|
558 |
|
|
set publisher = null
|
559 |
|
|
where publisher = 'document';
|
560 |
|
|
|
561 |
7290
|
leinfelder
|
--update creator usinig LDAP lookup
|
562 |
7296
|
leinfelder
|
CREATE TABLE ecoinfo_dn (dn text, givenName text, sn text);
|
563 |
7320
|
leinfelder
|
--TRUNCATE TABLE ecoinfo_dn;
|
564 |
7296
|
leinfelder
|
COPY ecoinfo_dn FROM '/tmp/ecoinfo_dn.csv' WITH CSV HEADER;
|
565 |
7290
|
leinfelder
|
|
566 |
7296
|
leinfelder
|
update doi_registration
|
567 |
7306
|
leinfelder
|
set creator =
|
568 |
|
|
case when givenName is null then
|
569 |
|
|
sn
|
570 |
|
|
else
|
571 |
7361
|
leinfelder
|
sn || ', ' || givenName
|
572 |
7306
|
leinfelder
|
end
|
573 |
7296
|
leinfelder
|
from ecoinfo_dn
|
574 |
7320
|
leinfelder
|
where trim(both from lower(creator)) = lower(dn);
|
575 |
7296
|
leinfelder
|
|
576 |
|
|
update doi_registration
|
577 |
7306
|
leinfelder
|
set publisher =
|
578 |
|
|
case when givenName is null then
|
579 |
|
|
sn
|
580 |
|
|
else
|
581 |
7361
|
leinfelder
|
sn || ', ' || givenName
|
582 |
7306
|
leinfelder
|
end
|
583 |
7296
|
leinfelder
|
from ecoinfo_dn
|
584 |
7320
|
leinfelder
|
where trim(both from lower(publisher)) = lower(dn);
|
585 |
7296
|
leinfelder
|
|
586 |
|
|
select creator, count(*) as cnt
|
587 |
|
|
from doi_registration
|
588 |
|
|
where creator like 'uid=%'
|
589 |
|
|
group by creator
|
590 |
|
|
order by cnt desc;
|
591 |
|
|
|
592 |
7320
|
leinfelder
|
-- update the data files with owner/publisher from EML entry
|
593 |
|
|
update doi_registration doi
|
594 |
|
|
set creator = meta.creator,
|
595 |
|
|
publisher = meta.publisher
|
596 |
|
|
from doi_registration meta, identifier id, ecogrid_docids eco
|
597 |
|
|
where doi.guid = id.guid
|
598 |
|
|
and id.docid||'.'||id.rev = eco.data_docid
|
599 |
|
|
and eco.guid = meta.guid;
|
600 |
|
|
|
601 |
7324
|
leinfelder
|
-- clean up KBS entries that have empty user_owner
|
602 |
|
|
update doi_registration
|
603 |
|
|
set creator = 'Kellogg Biological Station'
|
604 |
|
|
where (creator is null or trim(creator) = '')
|
605 |
|
|
and guid like '%knb-lter-kbs%';
|
606 |
|
|
|
607 |
|
|
update doi_registration
|
608 |
|
|
set publisher = 'Kellogg Biological Station'
|
609 |
|
|
where (publisher is null or trim(publisher) = '')
|
610 |
|
|
and guid like '%knb-lter-kbs%';
|
611 |
|
|
|
612 |
7328
|
leinfelder
|
-- more clean up
|
613 |
|
|
update doi_registration
|
614 |
|
|
set creator = trim(creator),
|
615 |
|
|
publisher = trim(publisher);
|
616 |
|
|
|
617 |
7363
|
leinfelder
|
-- set the publisher to the source system if it is the same as the creator
|
618 |
|
|
update doi_registration
|
619 |
|
|
set publisher =
|
620 |
|
|
case
|
621 |
|
|
when guid like 'doi:10.5063%' then
|
622 |
|
|
'Knowledge Network for Biocomplexity (KNB)'
|
623 |
|
|
when guid like 'doi:10.6085%' then
|
624 |
|
|
'Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO)'
|
625 |
|
|
when guid like 'doi:10.6073%' then
|
626 |
|
|
'Long Term Ecological Research Network (LTER)'
|
627 |
|
|
else
|
628 |
|
|
publisher
|
629 |
|
|
end
|
630 |
|
|
where publisher = creator;
|
631 |
7328
|
leinfelder
|
|
632 |
7414
|
leinfelder
|
-- entity references
|
633 |
|
|
update doi_registration
|
634 |
|
|
set publisher = regexp_replace(publisher, '&', '&', 'g');
|
635 |
|
|
update doi_registration
|
636 |
|
|
set publisher = regexp_replace(publisher, ''', E'\'', 'g');
|
637 |
|
|
--accented i (í)
|
638 |
|
|
update doi_registration
|
639 |
|
|
set publisher = regexp_replace(publisher, 'í', 'í', 'g')
|
640 |
|
|
where publisher like '%í%';
|
641 |
|
|
update doi_registration
|
642 |
|
|
set creator = regexp_replace(creator, '&', '&', 'g');
|
643 |
|
|
update doi_registration
|
644 |
|
|
set creator = regexp_replace(creator, ''', E'\'', 'g');
|
645 |
|
|
|
646 |
|
|
--titles
|
647 |
|
|
update doi_registration
|
648 |
|
|
set title = regexp_replace(title, '&', '&', 'g');
|
649 |
|
|
update doi_registration
|
650 |
|
|
set title = regexp_replace(title, '∓', '&', 'g')
|
651 |
|
|
where title like '%∓%';
|
652 |
|
|
update doi_registration
|
653 |
|
|
set title = regexp_replace(title, ''', E'\'', 'g');
|
654 |
|
|
update doi_registration
|
655 |
|
|
set title = regexp_replace(title, '"', E'\'', 'g');
|
656 |
|
|
update doi_registration
|
657 |
|
|
set title = regexp_replace(title, '>', '>', 'g');
|
658 |
|
|
update doi_registration
|
659 |
|
|
set title = regexp_replace(title, '<', '<', 'g');
|
660 |
|
|
update doi_registration
|
661 |
|
|
set title = regexp_replace(title, 'í', 'í', 'g')
|
662 |
|
|
where title like '%í%';
|
663 |
|
|
update doi_registration
|
664 |
|
|
set title = regexp_replace(title, 'í', 'í', 'g')
|
665 |
|
|
where title like '%í%';
|
666 |
|
|
update doi_registration
|
667 |
|
|
set title = regexp_replace(title, 'ñ', 'í', 'g')
|
668 |
|
|
where title like '%ñ%';
|
669 |
|
|
update doi_registration
|
670 |
|
|
set title = regexp_replace(title, 'ó', 'ó', 'g')
|
671 |
|
|
where title like '%ó%';
|
672 |
|
|
update doi_registration
|
673 |
|
|
set title = regexp_replace(title, 'ã', 'ã', 'g')
|
674 |
|
|
where title like '%ã%';
|
675 |
|
|
update doi_registration
|
676 |
|
|
set title = regexp_replace(title, 'ç', 'ç', 'g')
|
677 |
|
|
where title like '%ç%';
|
678 |
|
|
update doi_registration
|
679 |
|
|
set title = regexp_replace(title, 'é', 'é', 'g')
|
680 |
|
|
where title like '%é%';
|
681 |
|
|
update doi_registration
|
682 |
|
|
set title = regexp_replace(title, 'ñ', 'ñ', 'g')
|
683 |
|
|
where title like '%ñ%';
|
684 |
|
|
update doi_registration
|
685 |
|
|
set title = regexp_replace(title, '–', '-', 'g')
|
686 |
|
|
where title like '%–%';
|
687 |
|
|
update doi_registration
|
688 |
|
|
set title = regexp_replace(title, '’', E'\'', 'g')
|
689 |
|
|
where title like '%’%';
|
690 |
|
|
update doi_registration
|
691 |
|
|
set title = regexp_replace(title, '–', '/', 'g')
|
692 |
|
|
where title like '%–%';
|
693 |
|
|
update doi_registration
|
694 |
|
|
set title = regexp_replace(title, 'á', 'á', 'g')
|
695 |
|
|
where title like '%á%';
|
696 |
|
|
update doi_registration
|
697 |
|
|
set title = regexp_replace(title, 'ó', 'ó', 'g')
|
698 |
|
|
where title like '%ó%';
|
699 |
|
|
--格式範例 (格式范例)
|
700 |
|
|
update doi_registration
|
701 |
|
|
set title = regexp_replace(title, '格式範例', '格式范例', 'g')
|
702 |
|
|
where title like '%格式範例%';
|
703 |
|
|
|
704 |
|
|
--directional quotes
|
705 |
|
|
update doi_registration
|
706 |
|
|
set title = regexp_replace(title, '”', '"', 'g')
|
707 |
|
|
where title like '%”%';
|
708 |
|
|
update doi_registration
|
709 |
|
|
set title = regexp_replace(title, '“', '"', 'g')
|
710 |
|
|
where title like '%“%';
|
711 |
|
|
--one off apostrophe
|
712 |
|
|
update doi_registration
|
713 |
|
|
set title = regexp_replace(title, 'Õ', E'\'', 'g')
|
714 |
|
|
where title like '%Õ%';
|
715 |
|
|
update doi_registration
|
716 |
|
|
set title = regexp_replace(title, '–', '-', 'g')
|
717 |
|
|
where title like '%–%';
|
718 |
|
|
|
719 |
|
|
--after reading the complete metadata, I could interpret these as "greater than"
|
720 |
|
|
update doi_registration
|
721 |
|
|
set title = regexp_replace(title, '&t;', '>', 'g')
|
722 |
|
|
where title like '%&t;%'
|
723 |
|
|
and guid in ('doi:10.6073/AA/knb-lter-luq.15.1', 'doi:10.6073/AA/knb-lter-luq.39.1', 'doi:10.6073/AA/knb-lter-luq.37.1', 'doi:10.6073/AA/knb-lter-luq.40.1', 'doi:10.6073/AA/knb-lter-luq.18.1' );
|
724 |
|
|
|
725 |
|
|
|
726 |
|
|
--special characters
|
727 |
|
|
update doi_registration
|
728 |
|
|
set creator = regexp_replace(creator, 'é', 'é', 'g')
|
729 |
|
|
where creator like '%é%';
|
730 |
|
|
update doi_registration
|
731 |
|
|
set creator = regexp_replace(creator, 'ç', 'ç', 'g')
|
732 |
|
|
where creator like '%ç%';
|
733 |
|
|
update doi_registration
|
734 |
|
|
set creator = regexp_replace(creator, 'ñ', 'ñ', 'g')
|
735 |
|
|
where creator like '%ñ%';
|
736 |
|
|
-- Gutiérrez, Ralph, J.
|
737 |
|
|
-- Liébault, Frédéric
|
738 |
|
|
update doi_registration
|
739 |
|
|
set creator = regexp_replace(creator, 'é', 'é', 'g')
|
740 |
|
|
where creator like '%é%';
|
741 |
|
|
-- Ramírez, Alonso
|
742 |
|
|
update doi_registration
|
743 |
|
|
set creator = regexp_replace(creator, 'í', 'í', 'g')
|
744 |
|
|
where creator like '%í%';
|
745 |
|
|
-- González, Grizelle
|
746 |
|
|
update doi_registration
|
747 |
|
|
set creator = regexp_replace(creator, 'á', 'á', 'g')
|
748 |
|
|
where creator like '%á%';
|
749 |
|
|
--王, (王, 名, 姓)
|
750 |
|
|
update doi_registration
|
751 |
|
|
set creator = regexp_replace(creator, '王', '王', 'g')
|
752 |
|
|
where creator like '%王%';
|
753 |
|
|
--名
|
754 |
|
|
update doi_registration
|
755 |
|
|
set creator = regexp_replace(creator, '名', '名', 'g')
|
756 |
|
|
where creator like '%名%';
|
757 |
|
|
--姓
|
758 |
|
|
update doi_registration
|
759 |
|
|
set creator = regexp_replace(creator, '姓', '姓', 'g')
|
760 |
|
|
where creator like '%姓%';
|
761 |
|
|
-- These are left
|
762 |
|
|
-- Helmbrecht, S ’rai
|
763 |
|
|
-- lkñlkl, Fgfggf
|
764 |
|
|
|
765 |
|
|
-- clean up
|
766 |
|
|
update doi_registration
|
767 |
|
|
set publisher = replace(publisher, E'\n', ' ');
|
768 |
|
|
update doi_registration
|
769 |
|
|
set publisher = regexp_replace(publisher, E'\\s+', ' ', 'g');
|
770 |
|
|
update doi_registration
|
771 |
|
|
set publisher = regexp_replace(publisher, E'^\\s+', '', 'g');
|
772 |
|
|
|
773 |
|
|
-- use only year for pub_date
|
774 |
|
|
update doi_registration
|
775 |
|
|
set pub_date = to_char(date(pub_date), 'YYYY')
|
776 |
|
|
where length(pub_date) > 4
|
777 |
|
|
and pub_date like '%-%-%';
|
778 |
|
|
|
779 |
|
|
--set the rest to upload date, xml_documents
|
780 |
|
|
update doi_registration doi
|
781 |
|
|
set pub_date = to_char(date_created, 'YYYY')
|
782 |
|
|
from xml_documents x, identifier id
|
783 |
7416
|
leinfelder
|
where length(pub_date) != 4
|
784 |
7414
|
leinfelder
|
and doi.guid = id.guid
|
785 |
|
|
and id.docid = x.docid
|
786 |
|
|
and id.rev = x.rev;
|
787 |
|
|
-- revisions
|
788 |
|
|
update doi_registration doi
|
789 |
|
|
set pub_date = to_char(date_created, 'YYYY')
|
790 |
|
|
from xml_revisions x, identifier id
|
791 |
7416
|
leinfelder
|
where length(pub_date) != 4
|
792 |
7414
|
leinfelder
|
and doi.guid = id.guid
|
793 |
|
|
and id.docid = x.docid
|
794 |
|
|
and id.rev = x.rev;
|
795 |
|
|
|
796 |
7415
|
leinfelder
|
update doi_registration
|
797 |
|
|
set creator = replace(creator, E'\n', ' ');
|
798 |
|
|
|
799 |
|
|
-- some entries got in with blank spaces
|
800 |
|
|
update doi_registration
|
801 |
|
|
set title = 'unknown'
|
802 |
|
|
where length(trim(title)) = 0;
|
803 |
|
|
|
804 |
|
|
update doi_registration
|
805 |
|
|
set creator = 'unknown'
|
806 |
|
|
where length(trim(creator)) = 0;
|
807 |
|
|
|
808 |
|
|
-- BES has very long publisher fields, so use this default for them all
|
809 |
|
|
update doi_registration
|
810 |
|
|
set publisher = 'Baltimore Ecosystem Study LTER'
|
811 |
|
|
where guid like '%knb-lter-bes%';
|
812 |
|
|
|
813 |
7416
|
leinfelder
|
-- need URL identifiers for DataCite when they are not DOIs
|
814 |
|
|
update doi_registration
|
815 |
|
|
set obsoletedBy = 'https://cn.dataone.org/cn/v1/resolve/' || obsoletedBy
|
816 |
|
|
where obsoletedBy not like 'doi%';
|
817 |
|
|
|
818 |
|
|
update doi_registration
|
819 |
|
|
set obsoletes = 'https://cn.dataone.org/cn/v1/resolve/' || obsoletes
|
820 |
|
|
where obsoletes not like 'doi%';
|
821 |
|
|
|
822 |
|
|
ALTER TABLE doi_registration
|
823 |
|
|
ADD COLUMN obsoletedByIdType text,
|
824 |
|
|
ADD COLUMN obsoletesIdType text,
|
825 |
|
|
ADD COLUMN resourceMapLocationIdType text;
|
826 |
|
|
|
827 |
|
|
update doi_registration
|
828 |
|
|
set obsoletedByIdType = 'DOI'
|
829 |
|
|
where obsoletedBy is not null
|
830 |
|
|
and obsoletedBy like 'doi%';
|
831 |
|
|
|
832 |
|
|
update doi_registration
|
833 |
|
|
set obsoletedByIdType = 'URL'
|
834 |
|
|
where obsoletedBy is not null
|
835 |
|
|
and obsoletedBy not like 'doi%';
|
836 |
|
|
|
837 |
|
|
update doi_registration
|
838 |
|
|
set obsoletesIdType = 'DOI'
|
839 |
|
|
where obsoletes is not null
|
840 |
|
|
and obsoletes like 'doi%';
|
841 |
|
|
|
842 |
|
|
update doi_registration
|
843 |
|
|
set obsoletesIdType = 'URL'
|
844 |
|
|
where obsoletes is not null
|
845 |
|
|
and obsoletes not like 'doi%';
|
846 |
|
|
|
847 |
|
|
update doi_registration
|
848 |
|
|
set resourceMapLocationIdType = 'URL'
|
849 |
|
|
where resourceMapLocation is not null;
|
850 |
|
|
|
851 |
7290
|
leinfelder
|
-- copy to the external file
|
852 |
|
|
COPY
|
853 |
|
|
(select ezid_account,
|
854 |
|
|
guid as dc_identifier,
|
855 |
|
|
url as datacite_url,
|
856 |
|
|
title as dc_title,
|
857 |
|
|
creator as dc_creator,
|
858 |
|
|
publisher as dc_publisher,
|
859 |
|
|
pub_date as datacite_publicationYear,
|
860 |
7335
|
leinfelder
|
split_part(resourceType, '/', 1) as datacite_resourceTypeGeneral,
|
861 |
|
|
split_part(resourceType, '/', 2) as datacite_resourceType,
|
862 |
|
|
objectFormat as datacite_format,
|
863 |
|
|
obsoletedBy as datacite_relatedIdentifier_isPreviousVersionOf,
|
864 |
7416
|
leinfelder
|
obsoletedByIdType as datacite_relatedIdentifier_isPreviousVersionOfType,
|
865 |
7335
|
leinfelder
|
obsoletes as datacite_relatedIdentifier_isNewVersionOf,
|
866 |
7416
|
leinfelder
|
obsoletesIdType as datacite_relatedIdentifier_isNewVersionOfType,
|
867 |
7365
|
leinfelder
|
resourceMapLocation as datacite_relatedIdentifier_isPartOf,
|
868 |
7416
|
leinfelder
|
resourceMapLocationIdType as datacite_relatedIdentifier_isPartOfType,
|
869 |
7335
|
leinfelder
|
access as d1_read_access
|
870 |
7290
|
leinfelder
|
from doi_registration
|
871 |
7362
|
leinfelder
|
where access = 'public'
|
872 |
7296
|
leinfelder
|
order by dc_identifier)
|
873 |
7189
|
leinfelder
|
TO '/tmp/doi_registration.csv'
|
874 |
|
|
WITH CSV HEADER;
|
875 |
7288
|
leinfelder
|
--164548
|
876 |
7189
|
leinfelder
|
|
877 |
|
|
--drop table doi_registration;
|
878 |
7290
|
leinfelder
|
--drop table ecogrid_docids;
|
879 |
7296
|
leinfelder
|
--drop table ecoinfo_dn;
|