Revision 906
Added by berkley almost 23 years ago
| build.oracle.xml | ||
|---|---|---|
| 98 | 98 |
value="/oracle01/app/oracle/product/8.1.6" /> |
| 99 | 99 |
<property name="toolsdir" |
| 100 | 100 |
value="/usr/local/devtools" /> |
| 101 |
<property name="xmlp" |
|
| 102 |
value="${toolsdir}/OracleXSU111/lib/xmlparserv2.jar" />
|
|
| 103 | 101 |
<property name="xmlp2" |
| 104 | 102 |
value="${toolsdir}/xerces-1_1_3/xerces.jar" />
|
| 105 | 103 |
<property name="jdbc" |
| ... | ... | |
| 112 | 110 |
value="lib/srbrmi" /> |
| 113 | 111 |
<property name="cos" |
| 114 | 112 |
value="lib/cos.jar" /> |
| 113 |
<property name="xalan" |
|
| 114 |
value="lib/xalan/xalan.jar" /> |
|
| 115 |
<property name="xalanxml-apis" |
|
| 116 |
value="lib/xalan/xml-apis.jar" /> |
|
| 115 | 117 |
<property name="cpath" |
| 116 |
value="${xmlp2}:${xmlp}:${jdbc}:${jserv}:${jsdk}:${srb}:${cos}"/>
|
|
| 118 |
value="${xmlp2}:${xalan}:${xalanxml-apis}:${jdbc}:${jserv}:${jsdk}:${srb}:${cos}"/>
|
|
| 117 | 119 |
<property name="package.home" value="edu/ucsb/nceas/metacat" /> |
| 118 | 120 |
|
| 119 | 121 |
</target> |
| build.postgres.xml | ||
|---|---|---|
| 98 | 98 |
value="/oracle01/app/oracle/product/8.1.6" /> |
| 99 | 99 |
<property name="toolsdir" |
| 100 | 100 |
value="/usr/local/devtools" /> |
| 101 |
<property name="xmlp" |
|
| 102 |
value="./lib/xmlparserv2.jar" /> |
|
| 103 | 101 |
<property name="xmlp2" |
| 104 | 102 |
value="./lib/xerces.jar" /> |
| 105 | 103 |
<property name="jdbc" |
| 106 |
value="/home/berkley/xmltodb/lib/jdbc7.1-1.2.jar" />
|
|
| 104 |
value="lib/jdbc7.1-1.2.jar" /> |
|
| 107 | 105 |
<property name="jserv" |
| 108 | 106 |
value="/usr/lib/apache/ApacheJServ.jar" /> |
| 109 | 107 |
<property name="jsdk" |
| ... | ... | |
| 112 | 110 |
value="lib/srbrmi" /> |
| 113 | 111 |
<property name="cos" |
| 114 | 112 |
value="lib/cos.jar" /> |
| 113 |
<property name="xalan" |
|
| 114 |
value="lib/xalan/xalan.jar" /> |
|
| 115 |
<property name="xalanxml-apis" |
|
| 116 |
value="lib/xalan/xml-apis.jar" /> |
|
| 115 | 117 |
<property name="cpath" |
| 116 |
value="${xmlp2}:${xmlp}:${jdbc}:${jserv}:${jsdk}:${srb}:${cos}"/>
|
|
| 118 |
value="${xalan}:${xalanxml-apis}:${xmlp2}:${jdbc}:${jserv}:${jsdk}:${srb}:${cos}"/>
|
|
| 117 | 119 |
<property name="package.home" value="edu/ucsb/nceas/metacat" /> |
| 118 |
|
|
| 119 | 120 |
</target> |
| 120 | 121 |
|
| 121 | 122 |
<target name="prepare" depends="init"> |
| ... | ... | |
| 199 | 200 |
tofile="${installdir}/WEB-INF/lib/oracle-jdbc111.jar" />
|
| 200 | 201 |
<copy file="${cos}"
|
| 201 | 202 |
tofile="${installdir}/WEB-INF/lib/cos.jar" />
|
| 203 |
<copy file="${xalan}"
|
|
| 204 |
tofile="${installdir}/WEB-INF/lib/xalan.jar" />
|
|
| 205 |
<copy file="${xalanxml-apis}"
|
|
| 206 |
tofile="${installdir}/WEB-INF/lib/xml-apis.jar" />
|
|
| 202 | 207 |
<copy file="lib/web.xml" |
| 203 | 208 |
tofile="${installdir}/WEB-INF/web.xml" />
|
| 204 | 209 |
<copy todir="${build.img}" filtering="no">
|
| src/edu/ucsb/nceas/metacat/DBTransform.java | ||
|---|---|---|
| 34 | 34 |
import java.sql.*; |
| 35 | 35 |
import java.util.Stack; |
| 36 | 36 |
|
| 37 |
import javax.xml.transform.TransformerFactory; |
|
| 38 |
import javax.xml.transform.Transformer; |
|
| 39 |
import javax.xml.transform.stream.StreamSource; |
|
| 40 |
import javax.xml.transform.stream.StreamResult; |
|
| 41 |
import javax.xml.transform.TransformerException; |
|
| 42 |
import javax.xml.transform.TransformerConfigurationException; |
|
| 43 |
|
|
| 44 |
import org.apache.xerces.parsers.DOMParser; |
|
| 45 |
import org.w3c.dom.Attr; |
|
| 46 |
import org.w3c.dom.NamedNodeMap; |
|
| 47 |
import org.w3c.dom.NodeList; |
|
| 48 |
import org.w3c.dom.Document; |
|
| 49 |
import org.w3c.dom.Node; |
|
| 50 |
import org.w3c.dom.NodeList; |
|
| 51 |
import org.w3c.dom.DocumentType; |
|
| 52 |
import org.xml.sax.SAXException; |
|
| 53 |
import org.xml.sax.InputSource; |
|
| 54 |
import org.apache.xerces.dom.DocumentTypeImpl; |
|
| 55 |
import org.apache.xpath.XPathAPI; |
|
| 56 |
import org.w3c.dom.NamedNodeMap; |
|
| 57 |
|
|
| 58 |
/* |
|
| 37 | 59 |
import oracle.xml.parser.v2.XSLStylesheet; |
| 38 | 60 |
import oracle.xml.parser.v2.XSLException; |
| 39 | 61 |
import oracle.xml.parser.v2.XMLParseException; |
| 40 | 62 |
import oracle.xml.parser.v2.XSLProcessor; |
| 41 | 63 |
import oracle.xml.parser.v2.XMLDocument; |
| 42 | 64 |
import oracle.xml.parser.v2.DOMParser; |
| 65 |
*/ |
|
| 43 | 66 |
import org.w3c.dom.Document; |
| 44 | 67 |
import org.w3c.dom.Node; |
| 45 | 68 |
import org.w3c.dom.Element; |
| ... | ... | |
| 91 | 114 |
if (xsl_system_id != null) {
|
| 92 | 115 |
// Create a stylesheet from the system id that was found |
| 93 | 116 |
try {
|
| 94 |
XSLStylesheet style = new XSLStylesheet(new URL(xsl_system_id), null); |
|
| 95 |
DOMParser dp = new DOMParser(); |
|
| 96 |
dp.setValidationMode(false); |
|
| 97 |
dp.parse((Reader)(new StringReader(doc))); |
|
| 98 |
new XSLProcessor().processXSL(style, dp.getDocument(), pw); |
|
| 117 |
TransformerFactory tFactory = TransformerFactory.newInstance(); |
|
| 118 |
Transformer transformer = tFactory.newTransformer( |
|
| 119 |
new StreamSource(xsl_system_id)); |
|
| 120 |
transformer.transform(new StreamSource(new StringReader(doc)), |
|
| 121 |
new StreamResult(pw)); |
|
| 122 |
|
|
| 99 | 123 |
} catch (Exception e) {
|
| 100 | 124 |
pw.println(xsl_system_id + "Error transforming document in " + |
| 101 | 125 |
"DBTransform.transformXMLDocument: " + |
| 102 | 126 |
e.getMessage()); |
| 127 |
//e.printStackTrace(); |
|
| 103 | 128 |
} |
| 104 | 129 |
} else {
|
| 105 | 130 |
// No stylesheet registered form this document type, so just return the |
| ... | ... | |
| 107 | 132 |
pw.print(doc); |
| 108 | 133 |
} |
| 109 | 134 |
} |
| 135 |
|
|
| 136 |
|
|
| 137 |
/** |
|
| 138 |
* gets the content of a tag in a given xml file with the given path |
|
| 139 |
* @param f the file to parse |
|
| 140 |
* @param path the path to get the content from |
|
| 141 |
*/ |
|
| 142 |
public static NodeList getPathContent(File f, String path) |
|
| 143 |
{
|
|
| 144 |
if(f == null) |
|
| 145 |
{
|
|
| 146 |
return null; |
|
| 147 |
} |
|
| 148 |
|
|
| 149 |
DOMParser parser = new DOMParser(); |
|
| 150 |
InputSource in; |
|
| 151 |
FileInputStream fs; |
|
| 152 |
|
|
| 153 |
try |
|
| 154 |
{
|
|
| 155 |
fs = new FileInputStream(f); |
|
| 156 |
in = new InputSource(fs); |
|
| 157 |
} |
|
| 158 |
catch(FileNotFoundException fnf) |
|
| 159 |
{
|
|
| 160 |
fnf.printStackTrace(); |
|
| 161 |
return null; |
|
| 162 |
} |
|
| 163 |
|
|
| 164 |
try |
|
| 165 |
{
|
|
| 166 |
parser.parse(in); |
|
| 167 |
fs.close(); |
|
| 168 |
} |
|
| 169 |
catch(Exception e1) |
|
| 170 |
{
|
|
| 171 |
System.err.println("File: " + f.getPath() + " : parse threw: " +
|
|
| 172 |
e1.toString()); |
|
| 173 |
return null; |
|
| 174 |
} |
|
| 175 |
|
|
| 176 |
Document doc = parser.getDocument(); |
|
| 177 |
|
|
| 178 |
try |
|
| 179 |
{
|
|
| 180 |
NodeList docNodeList = XPathAPI.selectNodeList(doc, path); |
|
| 181 |
return docNodeList; |
|
| 182 |
} |
|
| 183 |
catch(Exception se) |
|
| 184 |
{
|
|
| 185 |
System.err.println("file: " + f.getPath() + " : parse threw: " +
|
|
| 186 |
se.toString()); |
|
| 187 |
return null; |
|
| 188 |
} |
|
| 189 |
} |
|
| 110 | 190 |
|
| 111 | 191 |
/** |
| 112 | 192 |
* Lookup a stylesheet reference from the db catalog |
| ... | ... | |
| 125 | 205 |
|
| 126 | 206 |
// Load the style-set map for this qformat into a DOM |
| 127 | 207 |
try {
|
| 208 |
boolean breakflag = false; |
|
| 128 | 209 |
String filename = configDir + "/" + qformat + ".xml"; |
| 129 | 210 |
util.debugMessage("Trying style-set file: " + filename);
|
| 130 |
|
|
| 131 |
DOMParser dp = new DOMParser(); |
|
| 132 |
dp.setValidationMode(false); |
|
| 133 |
dp.parse((Reader)(new FileReader(filename))); |
|
| 134 |
Document doc = dp.getDocument(); |
|
| 135 |
Element root = doc.getDocumentElement(); |
|
| 136 |
String styleName = root.getAttribute("name");
|
|
| 137 |
util.debugMessage("Root style-set element is: " + styleName);
|
|
| 211 |
File f = new File(filename); |
|
| 212 |
NodeList nlDoctype = getPathContent(f, "/style-set/doctype"); |
|
| 213 |
NodeList nlDefault = getPathContent(f, "/style-set/default-style"); |
|
| 214 |
Node nDefault = nlDefault.item(0); |
|
| 215 |
systemId = nDefault.getFirstChild().getNodeValue(); //set the default |
|
| 138 | 216 |
|
| 139 |
Element currentElement = (Element)root.getFirstChild(); |
|
| 140 |
systemId = ((Node)currentElement.getFirstChild()).getNodeValue(); |
|
| 141 |
util.debugMessage("Default is: " + systemId);
|
|
| 142 |
|
|
| 143 |
while ((currentElement = |
|
| 144 |
(Element)currentElement.getNextSibling()) != null) {
|
|
| 145 |
String tagName = currentElement.getTagName(); |
|
| 146 |
util.debugMessage("Processing element: " + tagName);
|
|
| 147 |
if (tagName.equals("doctype")) {
|
|
| 148 |
String doctype = currentElement.getAttribute("publicid");
|
|
| 149 |
util.debugMessage("Processing publicid: " + doctype);
|
|
| 150 |
util.debugMessage("Comparing to source: " + sourcetype);
|
|
| 151 |
if (doctype.equals(sourcetype)) {
|
|
| 152 |
Element currentChild = (Element)currentElement.getFirstChild(); |
|
| 153 |
while (currentChild != null) {
|
|
| 154 |
String target = currentChild.getAttribute("publicid");
|
|
| 155 |
util.debugMessage("Processing target publicid: " + target);
|
|
| 156 |
util.debugMessage("Comparing to target: " + targettype);
|
|
| 157 |
if (target.equals(targettype)) {
|
|
| 158 |
Node styleText = currentChild.getFirstChild(); |
|
| 159 |
systemId = styleText.getNodeValue(); |
|
| 160 |
break; |
|
| 217 |
for(int i=0; i<nlDoctype.getLength(); i++) |
|
| 218 |
{ //look for the right sourcetype
|
|
| 219 |
Node nDoctype = nlDoctype.item(i); |
|
| 220 |
NamedNodeMap atts = nDoctype.getAttributes(); |
|
| 221 |
Node nAtt = atts.getNamedItem("publicid");
|
|
| 222 |
String doctype = nAtt.getFirstChild().getNodeValue(); |
|
| 223 |
if(doctype.equals(sourcetype)) |
|
| 224 |
{ //found the right sourcetype now we need to get the target type
|
|
| 225 |
NodeList nlChildren = nDoctype.getChildNodes(); |
|
| 226 |
for(int j=0; j<nlChildren.getLength(); j++) |
|
| 227 |
{
|
|
| 228 |
Node nChild = nlChildren.item(j); |
|
| 229 |
String childName = nChild.getNodeName(); |
|
| 230 |
if(childName.equals("target"))
|
|
| 231 |
{
|
|
| 232 |
NamedNodeMap childAtts = nChild.getAttributes(); |
|
| 233 |
Node nTargetPublicId = childAtts.getNamedItem("publicid");
|
|
| 234 |
String target = nTargetPublicId.getFirstChild().getNodeValue(); |
|
| 235 |
if(target.equals(targettype)) |
|
| 236 |
{ //we found the right target type
|
|
| 237 |
NodeList nlTarget = nChild.getChildNodes(); |
|
| 238 |
for(int k=0; k<nlTarget.getLength(); k++) |
|
| 239 |
{
|
|
| 240 |
Node nChildText = nlTarget.item(k); |
|
| 241 |
if(nChildText.getNodeType() == Node.TEXT_NODE) |
|
| 242 |
{ //get the text from the target node
|
|
| 243 |
systemId = nChildText.getNodeValue(); |
|
| 244 |
System.out.println("systemId: " + systemId);
|
|
| 245 |
breakflag = true; |
|
| 246 |
break; |
|
| 247 |
} |
|
| 248 |
} |
|
| 161 | 249 |
} |
| 162 |
currentChild = (Element)currentChild.getNextSibling(); |
|
| 163 | 250 |
} |
| 251 |
|
|
| 252 |
if(breakflag) |
|
| 253 |
{
|
|
| 254 |
break; |
|
| 255 |
} |
|
| 164 | 256 |
} |
| 165 | 257 |
} |
| 258 |
|
|
| 259 |
if(breakflag) |
|
| 260 |
{
|
|
| 261 |
break; |
|
| 262 |
} |
|
| 166 | 263 |
} |
| 167 |
} catch (IOException ioe) {
|
|
| 168 |
util.debugMessage("Caught IOException while opening style-set config.");
|
|
| 169 |
} catch (XMLParseException xpe) {
|
|
| 170 |
util.debugMessage("Error parsing style-set file");
|
|
| 171 |
} catch (SAXException se) {
|
|
| 172 |
util.debugMessage("SAX error parsing style-set file");
|
|
| 173 | 264 |
} |
| 265 |
catch(Exception e) |
|
| 266 |
{
|
|
| 267 |
System.out.println("Error parsing style-set file: " + e.getMessage());
|
|
| 268 |
e.printStackTrace(); |
|
| 269 |
} |
|
| 174 | 270 |
|
| 175 | 271 |
// Return the system ID for this particular source document type |
| 176 | 272 |
return systemId; |
| src/edu/ucsb/nceas/metacat/MetaCatServlet.java | ||
|---|---|---|
| 64 | 64 |
import javax.servlet.http.HttpUtils; |
| 65 | 65 |
import javax.servlet.ServletOutputStream; |
| 66 | 66 |
|
| 67 |
import oracle.xml.parser.v2.XSLStylesheet; |
|
| 68 |
import oracle.xml.parser.v2.XSLException; |
|
| 69 |
import oracle.xml.parser.v2.XMLDocumentFragment; |
|
| 70 |
import oracle.xml.parser.v2.XSLProcessor; |
|
| 71 |
|
|
| 72 | 67 |
import org.xml.sax.SAXException; |
| 73 | 68 |
|
| 74 | 69 |
/** |
| build.xml | ||
|---|---|---|
| 32 | 32 |
<project name="metacat" default="jar" basedir="."> |
| 33 | 33 |
<target name="init"> |
| 34 | 34 |
<property name="jdbc-connect" |
| 35 |
value="jdbc:oracle:thin:@dev.nceas.ucsb.edu:1521:exp"/>
|
|
| 36 |
<property name="installdir" value="/opt/tomcat/webapps/metacat" />
|
|
| 37 |
<property name="dbDriver" value="oracle.jdbc.driver.OracleDriver"/>
|
|
| 35 |
value="jdbc:postgresql://localhost/berkley"/>
|
|
| 36 |
<property name="installdir" value="/home/berkley/tomcat/webapps/metacat" />
|
|
| 37 |
<property name="dbDriver" value="org.postgresql.Driver"/>
|
|
| 38 | 38 |
<property name="name" value="metacat"/> |
| 39 | 39 |
<property name="Name" value="MetaCat"/> |
| 40 | 40 |
<property name="release" value="1.0.3"/> |
| 41 | 41 |
<property name="web-base-url" |
| 42 |
value="http://knb.ecoinformatics.org"/>
|
|
| 42 |
value="http://alpha.nceas.ucsb.edu:8080/"/>
|
|
| 43 | 43 |
|
| 44 | 44 |
<property name="replication-path" value="/servlet/replication"/> |
| 45 | 45 |
<property name="servlet-path" value="/metacat/servlet/metacat"/> |
| 46 | 46 |
<property name="html-path" value="/metacat"/> |
| 47 | 47 |
<property name="image-path" value="/img/metacat" /> |
| 48 | 48 |
<property name="style-path" value="/metacat/style"/> |
| 49 |
<property name="server" value="dev.nceas.ucsb.edu"/>
|
|
| 50 |
<property name="replication-log" value="/tmp/metacatreplication.log"/>
|
|
| 51 |
<property name="user" value="metacat_username"/>
|
|
| 52 |
<property name="password" value="your_pw_here"/>
|
|
| 49 |
<property name="server" value="alpha.nceas.ucsb.edu:8080"/>
|
|
| 50 |
<property name="replication-log" value="/home/berkley/tomcat/webapps/metacat/metacatreplication.log"/>
|
|
| 51 |
<property name="user" value="berkley"/>
|
|
| 52 |
<property name="password" value=""/> |
|
| 53 | 53 |
<property name="config-dir" value="${installdir}" />
|
| 54 | 54 |
<property name="default-style" value="knb" /> |
| 55 | 55 |
<property name="eml-module" value="mdstandards/eml" /> |
| ... | ... | |
| 98 | 98 |
value="/oracle01/app/oracle/product/8.1.6" /> |
| 99 | 99 |
<property name="toolsdir" |
| 100 | 100 |
value="/usr/local/devtools" /> |
| 101 |
<property name="xmlp" |
|
| 102 |
value="${toolsdir}/OracleXSU111/lib/xmlparserv2.jar" />
|
|
| 103 | 101 |
<property name="xmlp2" |
| 104 |
value="${toolsdir}/xerces-1_1_3/xerces.jar" />
|
|
| 102 |
value="./lib/xerces.jar" />
|
|
| 105 | 103 |
<property name="jdbc" |
| 106 |
value="${oracle_home}/jdbc/lib/classes111.zip" />
|
|
| 104 |
value="lib/jdbc7.1-1.2.jar" />
|
|
| 107 | 105 |
<property name="jserv" |
| 108 | 106 |
value="/usr/lib/apache/ApacheJServ.jar" /> |
| 109 | 107 |
<property name="jsdk" |
| 110 |
value="${toolsdir}/jakarta-tomcat/lib/servlet.jar" />
|
|
| 108 |
value="/home/berkley/tomcat/lib/common/servlet.jar" />
|
|
| 111 | 109 |
<property name="srb" |
| 112 | 110 |
value="lib/srbrmi" /> |
| 113 | 111 |
<property name="cos" |
| 114 | 112 |
value="lib/cos.jar" /> |
| 113 |
<property name="xalan" |
|
| 114 |
value="lib/xalan/xalan.jar" /> |
|
| 115 |
<property name="xalanxml-apis" |
|
| 116 |
value="lib/xalan/xml-apis.jar" /> |
|
| 115 | 117 |
<property name="cpath" |
| 116 |
value="${xmlp2}:${xmlp}:${jdbc}:${jserv}:${jsdk}:${srb}:${cos}"/>
|
|
| 118 |
value="${xalan}:${xalanxml-apis}:${xmlp2}:${jdbc}:${jserv}:${jsdk}:${srb}:${cos}"/>
|
|
| 117 | 119 |
<property name="package.home" value="edu/ucsb/nceas/metacat" /> |
| 118 |
|
|
| 119 | 120 |
</target> |
| 120 | 121 |
|
| 121 | 122 |
<target name="prepare" depends="init"> |
| ... | ... | |
| 199 | 200 |
tofile="${installdir}/WEB-INF/lib/oracle-jdbc111.jar" />
|
| 200 | 201 |
<copy file="${cos}"
|
| 201 | 202 |
tofile="${installdir}/WEB-INF/lib/cos.jar" />
|
| 203 |
<copy file="${xalan}"
|
|
| 204 |
tofile="${installdir}/WEB-INF/lib/xalan.jar" />
|
|
| 205 |
<copy file="${xalanxml-apis}"
|
|
| 206 |
tofile="${installdir}/WEB-INF/lib/xml-apis.jar" />
|
|
| 202 | 207 |
<copy file="lib/web.xml" |
| 203 | 208 |
tofile="${installdir}/WEB-INF/web.xml" />
|
| 204 | 209 |
<copy todir="${build.img}" filtering="no">
|
Also available in: Unified diff
updated metacat so that the xmlparserv2.jar file is no longer needed. replaced all of teh oracle xml processing with xalan and xerces.