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#
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# '$RCSfile$'
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# Copyright: 2000 Regents of the University of California
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#
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# '$Author: leinfelder $'
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# '$Date: 2015-06-23 08:48:57 -0700 (Tue, 23 Jun 2015) $'
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# '$Revision: 9228 $'
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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#
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package Metacat;
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require 5.005_62;
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use strict;
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use warnings;
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require Exporter;
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use AutoLoader qw(AUTOLOAD);
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use LWP::UserAgent;
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use HTTP::Request::Common qw(POST);
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use HTTP::Cookies;
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our @ISA = qw(Exporter);
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# Items to export into callers namespace by default. Note: do not export
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# names by default without a very good reason. Use EXPORT_OK instead.
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# Do not simply export all your public functions/methods/constants.
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# This allows declaration use Metacat ':all';
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# If you do not need this, moving things directly into @EXPORT or @EXPORT_OK
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# will save memory.
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our %EXPORT_TAGS = ( 'all' => [ qw(
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) ] );
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our @EXPORT_OK = ( @{ $EXPORT_TAGS{'all'} } );
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our @EXPORT = qw(
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);
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our $VERSION = '0.01';
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# Preloaded methods go here.
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#############################################################
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# Constructor creates a new class instance and inits all
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# of the instance variables to their proper default values,
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# which can later be changed using "set_options"
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#############################################################
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sub new {
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my($type,$metacatUrl) = @_;
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my $cookie_jar = HTTP::Cookies->new;
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my $self = {
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metacatUrl => $metacatUrl,
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message => '',
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cookies => \$cookie_jar
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};
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bless $self, $type;
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return $self;
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}
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#############################################################
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# subroutine to set options for the class, including the URL
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# for the Metacat database to which we would connect
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#############################################################
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sub set_options {
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my $self = shift;
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my %newargs = ( @_ );
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my $arg;
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foreach $arg (keys %newargs) {
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$self->{$arg} = $newargs{$arg};
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}
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}
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#############################################################
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# subroutine to send data to metacat and get the response
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# return response from metacat
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#############################################################
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sub sendData {
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my $self = shift;
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my %postData = ( @_ );
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$self->{'message'} = '';
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my $userAgent = new LWP::UserAgent;
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$userAgent->agent("MetacatClient/1.0");
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# determine encoding type
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my $contentType = 'application/x-www-form-urlencoded';
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if ($postData{'enctype'}) {
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$contentType = $postData{'enctype'};
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delete $postData{'enctype'};
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}
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my $request = POST("$self->{'metacatUrl'}",
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Content_Type => $contentType,
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Content => \%postData
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);
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# set cookies on UA object
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my $cookie_jar = $self->{'cookies'};
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$$cookie_jar->add_cookie_header($request);
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#print "Content_type:text/html\n\n";
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#print "request: " . $request->as_string();
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my $response = $userAgent->request($request);
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#print "response: " . $response->as_string();
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if ($response->is_success) {
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# save the cookies
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$$cookie_jar->extract_cookies($response);
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# save the metacat response message
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$self->{'message'} = $response->content;
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} else {
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#print "SendData content is: ", $response->content, "\n";
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return 0;
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}
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return $response;
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}
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#############################################################
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# subroutine to log into Metacat and save the cookie if the
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# login is valid. If not valid, return 0. If valid then send
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# following values to indicate user status
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# 1 - user
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# 2 - moderator
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# 3 - administrator
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# 4 - moderator and administrator
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#############################################################
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sub login {
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my $self = shift;
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my $username = shift;
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my $password = shift;
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my $returnval = 0;
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my %postData = ( action => 'login',
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qformat => 'xml',
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username => $username,
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password => $password
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);
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<login>/) {
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$returnval = 1;
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}
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if (($response) && $response->content =~ /<isAdministrator>/) {
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if (($response) && $response->content =~ /<isModerator>/) {
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$returnval = 4;
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} else {
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$returnval = 3;
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}
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} elsif (($response) && $response->content =~ /<isModerator>/){
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$returnval = 2;
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}
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return $returnval;
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}
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#############################################################
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# subroutine to logout of Metacat
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#############################################################
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sub logout {
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my $self = shift;
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my %postData = (action => 'logout');
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my $response = $self->sendData(%postData);
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# clear the cookie
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my $cookie_jar = $self->{'cookies'};
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$$cookie_jar->clear();
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return $response->content;
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}
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#############################################################
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# subroutine to log into Metacat and get usr info xml for
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# a logged in user
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#############################################################
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sub getUserInfo {
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my $self = shift;
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my %postData = (action => 'getloggedinuserinfo');
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my $response = $self->sendData(%postData);
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return $response->content;
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}
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#############################################################
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# subroutine to insert an XML document into Metacat
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# If success, return 1, else return 0
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#############################################################
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sub insert {
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my $self = shift;
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my $docid = shift;
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my $xmldocument = shift;
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my $dtd = shift;
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my $returnval = 0;
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my %postData = ( action => 'insert',
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docid => $docid,
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doctext => $xmldocument
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);
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if ($dtd) {
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$postData{'dtdtext'} = $dtd;
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}
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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} elsif (($response)) {
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$returnval = 0;
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#print "Error response from sendData!\n";
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#print $response->content, "\n";
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} else {
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$returnval = 0;
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#print "Invalid response from sendData!\n";
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}
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return $returnval;
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}
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#############################################################
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# subroutine to update an XML document in Metacat
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# If success, return 1, else return 0
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#############################################################
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sub update {
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my $self = shift;
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my $docid = shift;
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my $xmldocument = shift;
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my $dtd = shift;
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my $returnval = 0;
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my %postData = ( action => 'update',
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docid => $docid,
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doctext => $xmldocument
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);
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if ($dtd) {
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$postData{'dtdtext'} = $dtd;
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}
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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}
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return $returnval;
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}
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############################################################
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# subroutine to upload an XML document in Metacat
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# If success, return 1, else return 0
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#############################################################
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sub upload {
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my $self = shift;
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my $docid = shift;
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my $datafile = shift;
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my $filename = shift;
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my $returnval = 0;
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my %postData = ( action => 'upload',
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docid => $docid,
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datafile => [$datafile, $filename],
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enctype => 'form-data'
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);
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my $response = $self->sendData(%postData);
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#print "response is: $response";
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#
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if (($response) && $response->content =~ /<success>/) {
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$returnval = $response->content;
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}
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return $returnval;
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}
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#############################################################
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# subroutine to delete an XML document in Metacat
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# If success, return 1, else return 0
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#############################################################
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sub delete {
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my $self = shift;
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my $docid = shift;
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my $returnval = 0;
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my %postData = ( action => 'delete',
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docid => $docid
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);
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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}
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return $returnval;
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}
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#############################################################
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# subroutine to set access for an XML document in Metacat
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# If success, return 1, else return 0
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#############################################################
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sub setaccess {
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my $self = shift;
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my $docid = shift;
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my $principal = shift;
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my $permission = shift;
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my $permType = shift;
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my $permOrder = shift;
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my $returnval = 0;
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my %postData = ( action => 'setaccess',
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docid => $docid,
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principal => $principal,
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permission => $permission,
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permType => $permType,
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permOrder => $permOrder
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);
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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}
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return $returnval;
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}
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#############################################################
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# subroutine to read an XML document from Metacat
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# returns the XML from Metacat, which may be an error response
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#############################################################
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sub read {
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my $self = shift;
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my $docid = shift;
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my %postData = ( action => 'read',
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qformat => 'xml',
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docid => $docid
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);
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my $response = $self->sendData(%postData);
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my $returnval = 0;
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if ($response) {
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$returnval = $response;
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}
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return $returnval;
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}
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#############################################################
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# subroutine to query metacat using a structured path query
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# returns the XML from Metacat, which may be an error response
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#############################################################
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sub squery {
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my $self = shift;
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my $query = shift;
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my %postData = ( action => 'squery',
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qformat => 'xml',
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query => $query
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);
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my $response = $self->sendData(%postData);
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my $returnval = 0;
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if ($response) {
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$returnval = $response;
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}
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return $returnval;
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}
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398
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399
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#############################################################
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400
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# subroutine to get the maximimum id in a series
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401
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# If success, return max id, else return 0
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402
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#############################################################
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403
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sub getLastId {
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404
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my $self = shift;
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405
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my $scope = shift;
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406
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407
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my $returnval = 0;
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408
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my %postData = ( action => 'getlastdocid',
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scope => $scope
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);
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412
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413
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my $response = $self->sendData(%postData);
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414
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if (($response) && $response->content =~ /<docid>(.*)<\/docid>/s) {
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415
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$returnval = "$1";
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|
416
|
} elsif (($response)) {
|
|
417
|
$returnval = 0;
|
|
418
|
#print "Error response from sendData!\n";
|
|
419
|
#print $response->content, "\n";
|
|
420
|
} else {
|
|
421
|
$returnval = 0;
|
|
422
|
#print "Invalid response from sendData!\n";
|
|
423
|
}
|
|
424
|
|
|
425
|
return $returnval;
|
|
426
|
}
|
|
427
|
|
|
428
|
#############################################################
|
|
429
|
# subroutine to get the maximimum id in a series
|
|
430
|
# If success, return max id, else return 0
|
|
431
|
#############################################################
|
|
432
|
sub getLastRevision {
|
|
433
|
my $self = shift;
|
|
434
|
my $docid = shift;
|
|
435
|
|
|
436
|
my $returnval = 0;
|
|
437
|
|
|
438
|
my %postData = ( action => 'getrevisionanddoctype',
|
|
439
|
docid => $docid
|
|
440
|
);
|
|
441
|
|
|
442
|
my $response = $self->sendData(%postData);
|
|
443
|
if (($response) && $response->content =~ /(.*);(.*)/s) {
|
|
444
|
$returnval = "$1";
|
|
445
|
} elsif (($response)) {
|
|
446
|
$returnval = 0;
|
|
447
|
#print "Error response from sendData!\n";
|
|
448
|
#print $response->content, "\n";
|
|
449
|
} else {
|
|
450
|
$returnval = 0;
|
|
451
|
#print "Invalid response from sendData!\n";
|
|
452
|
}
|
|
453
|
|
|
454
|
return $returnval;
|
|
455
|
}
|
|
456
|
|
|
457
|
#############################################################
|
|
458
|
# subroutine to get the docid for a given PID
|
|
459
|
# If success, return docid, else return -1
|
|
460
|
#############################################################
|
|
461
|
sub getDocid {
|
|
462
|
my $self = shift;
|
|
463
|
my $pid = shift;
|
|
464
|
|
|
465
|
my $returnval = 0;
|
|
466
|
|
|
467
|
my %postData = ( action => 'getdocid',
|
|
468
|
pid => $pid
|
|
469
|
);
|
|
470
|
|
|
471
|
my $response = $self->sendData(%postData);
|
|
472
|
if (($response) && $response->content =~ /<docid>(.*)<\/docid>/s) {
|
|
473
|
$returnval = "$1";
|
|
474
|
} elsif (($response)) {
|
|
475
|
$returnval = -1;
|
|
476
|
#print "Error response from sendData!\n";
|
|
477
|
#print $response->content, "\n";
|
|
478
|
} else {
|
|
479
|
$returnval = -1;
|
|
480
|
#print "Invalid response from sendData!\n";
|
|
481
|
}
|
|
482
|
|
|
483
|
return $returnval;
|
|
484
|
}
|
|
485
|
|
|
486
|
#############################################################
|
|
487
|
# subroutine to get the message returned from the last executed
|
|
488
|
# metacat action. These are generally XML formatted messages.
|
|
489
|
#############################################################
|
|
490
|
sub getMessage {
|
|
491
|
my $self = shift;
|
|
492
|
|
|
493
|
return $self->{'message'};
|
|
494
|
}
|
|
495
|
|
|
496
|
#############################################################
|
|
497
|
# subroutine to get the cookies returned from the metacat
|
|
498
|
# server to establish (and pass on) session info (JSESSIONID).
|
|
499
|
#############################################################
|
|
500
|
sub getCookies {
|
|
501
|
my $self = shift;
|
|
502
|
|
|
503
|
return $self->{'cookies'};
|
|
504
|
}
|
|
505
|
|
|
506
|
# Autoload methods go after =cut, and are processed by the autosplit program.
|
|
507
|
|
|
508
|
1;
|
|
509
|
__END__
|
|
510
|
# Below is stub documentation for your module. You better edit it!
|
|
511
|
|
|
512
|
=head1 NAME
|
|
513
|
|
|
514
|
Metacat - Perl extension for communicating with the Metacat XML database
|
|
515
|
|
|
516
|
=head1 SYNOPSIS
|
|
517
|
|
|
518
|
use Metacat;
|
|
519
|
my $metacat = Metacat->new();
|
|
520
|
my $response = $metacat->login($username, $password);
|
|
521
|
print $metacat->getMessage();
|
|
522
|
$response = $metacat->insert($docid, $xmldoc);
|
|
523
|
print $metacat->getMessage();
|
|
524
|
$response = $metacat->insert($docid, $xmldoc, $dtd);
|
|
525
|
print $metacat->getMessage();
|
|
526
|
$response = $metacat->update($docid, $xmldoc);
|
|
527
|
print $metacat->getMessage();
|
|
528
|
$response = $metacat->upload($docid, $data);
|
|
529
|
print $metacat->getMessage();
|
|
530
|
$htmlResponse = $metacat->read($docid);
|
|
531
|
$xmldoc = $htmlResponse->content();
|
|
532
|
print $xmldoc;
|
|
533
|
$resultset = $metacat->squery($pathquery);
|
|
534
|
print $resultset;
|
|
535
|
$response = $metacat->delete($docid);
|
|
536
|
$response = $metacat->setaccess($docid,$principal,$permission,$permType,$permOrder);
|
|
537
|
my $lastid = $metacat->getLastId("obfs");
|
|
538
|
print $metacat->getMessage();
|
|
539
|
$response = $metacat->getCookies();
|
|
540
|
print $metacat->getMessage();
|
|
541
|
|
|
542
|
=head1 DESCRIPTION
|
|
543
|
|
|
544
|
This is a client library for accessing the Metacat XML database. Metacat
|
|
545
|
is a Java servlet that accepts commands over HTTP and returns XML and
|
|
546
|
HTML responses. See http://knb.ecoinformatics.org for details about
|
|
547
|
Metacat and its interface.
|
|
548
|
|
|
549
|
=head2 EXPORT
|
|
550
|
|
|
551
|
None by default.
|
|
552
|
|
|
553
|
|
|
554
|
=head1 AUTHOR
|
|
555
|
|
|
556
|
Matthew B. Jones, jones@nceas.ucsb.edu
|
|
557
|
|
|
558
|
=head1 SEE ALSO
|
|
559
|
|
|
560
|
perl(1).
|
|
561
|
|
|
562
|
=cut
|