Revision 9420
Added by ben leinfelder over 8 years ago
| application-context-annotator.xml | ||
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xmlns:p="http://www.springframework.org/schema/p" |
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xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd"> |
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<bean id="annotatorSubprocessor" class="org.dataone.cn.indexer.annotation.AnnotatorSubprocessor">
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<bean id="annotatorSubprocessor" class="edu.ucsb.nceas.metacat.index.annotation.MetacatAnnotatorSubprocessor">
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<!-- match annotation documents --> |
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<property name="matchDocuments"> |
| ... | ... | |
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<property name="fieldList"> |
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<list> |
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<ref bean="annotation.expansion" /> |
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<ref bean="annotation.bioportal.expansion" /> |
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<ref bean="annotation.esor.expansion" /> |
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</list> |
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</property> |
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<property name="fieldsToMerge"> |
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<list> |
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<value>sem_annotation</value> |
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<value>sem_annotation_bioportal_sm</value> |
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<value>sem_annotation_esor_sm</value> |
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<value>sem_annotates</value> |
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<value>sem_annotated_by</value> |
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</list> |
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</property> |
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</property> |
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<property name="ontologyList"> |
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<list> |
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<value>http://purl.org/spar/datacite/</value> |
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<value>http://purl.org/dc/terms/</value> |
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<value>http://www.w3.org/2006/time</value> |
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<value>http://purl.dataone.org/ontologies/observation/d1-ECSO.owl</value> |
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<value>http://purl.dataone.org/ontologies/provenance/ProvONE/v1/owl/provone.owl</value> |
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<value>http://purl.obolibrary.org/obo/envo.owl</value> |
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<value>http://purl.obolibrary.org/obo/chebi.owl</value> |
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</list> |
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</property> |
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</bean> |
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<bean id="annotation.expansion" class="org.dataone.cn.indexer.annotation.SparqlField"> |
| ... | ... | |
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PREFIX owl: <http://www.w3.org/2002/07/owl#> |
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SELECT ?sem_annotation |
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FROM <$GRAPH_NAME> |
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WHERE {
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<$CONCEPT_URI> rdfs:subClassOf+ ?sem_annotation . |
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} |
| ... | ... | |
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</constructor-arg> |
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<!--property name="multivalue" value="false" /--> |
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</bean> |
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<!-- bioportal-based annotation --> |
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<bean id="annotation.bioportal.expansion" class="org.dataone.cn.indexer.annotation.SparqlField"> |
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<constructor-arg name="name" value="sem_annotation_bioportal_sm" /> |
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<constructor-arg name="query"> |
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<value> |
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<![CDATA[ |
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> |
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> |
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PREFIX owl: <http://www.w3.org/2002/07/owl#> |
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SELECT ?sem_annotation_bioportal_sm |
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WHERE {
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<$CONCEPT_URI> rdfs:subClassOf+ ?sem_annotation_bioportal_sm . |
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} |
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]]> |
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</value> |
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</constructor-arg> |
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</bean> |
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<bean id="annotation.bioportal.raw" class="org.dataone.cn.indexer.annotation.SparqlField"> |
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<constructor-arg name="name" value="sem_annotation_bioportal_raw_sm" /> |
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<constructor-arg name="query"> |
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<value> |
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<![CDATA[ |
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> |
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> |
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PREFIX owl: <http://www.w3.org/2002/07/owl#> |
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SELECT ?sem_annotation_bioportal_raw_sm |
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WHERE {
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<$CONCEPT_URI> rdf:about ?sem_annotation_bioportal_raw_sm . |
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} |
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]]> |
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</value> |
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</constructor-arg> |
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</bean> |
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<!-- esor-based annotation --> |
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<bean id="annotation.esor.expansion" class="org.dataone.cn.indexer.annotation.SparqlField"> |
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<constructor-arg name="name" value="sem_annotation_esor_sm" /> |
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<constructor-arg name="query"> |
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<value> |
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<![CDATA[ |
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> |
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> |
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PREFIX owl: <http://www.w3.org/2002/07/owl#> |
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SELECT ?sem_annotation_esor_sm |
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WHERE {
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<$CONCEPT_URI> rdfs:subClassOf+ ?sem_annotation_esor_sm . |
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} |
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]]> |
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</value> |
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</constructor-arg> |
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</bean> |
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<bean id="annotation.esor.raw" class="org.dataone.cn.indexer.annotation.SparqlField"> |
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<constructor-arg name="name" value="sem_annotation_esor_raw_sm" /> |
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<constructor-arg name="query"> |
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<value> |
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<![CDATA[ |
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> |
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> |
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PREFIX owl: <http://www.w3.org/2002/07/owl#> |
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SELECT ?sem_annotation_esor_raw_sm |
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WHERE {
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<$CONCEPT_URI> rdf:about ?sem_annotation_esor_raw_sm . |
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} |
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]]> |
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</value> |
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</constructor-arg> |
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</bean> |
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</beans> |
Also available in: Unified diff
subclass AnnotatorSubprocessor for use in metacat-index (uses embedded solr server and solrj for retrieving/merging existing documents).