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<beans xmlns="http://www.springframework.org/schema/beans"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xmlns:p="http://www.springframework.org/schema/p"
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xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd">
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<bean id="annotatorSubprocessor" class="edu.ucsb.nceas.metacat.index.annotation.MetacatAnnotatorSubprocessor">
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<!-- match annotation documents -->
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<property name="matchDocuments">
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<list>
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<value>http://docs.annotatorjs.org/en/v1.2.x/annotation-format.html</value>
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</list>
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</property>
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<property name="fieldList">
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<list>
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<ref bean="annotation.expansion" />
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<ref bean="annotation.bioportal.expansion" />
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<ref bean="annotation.esor.expansion" />
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</list>
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</property>
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<property name="fieldsToMerge">
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<list>
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<value>sem_annotation</value>
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<value>sem_annotation_bioportal_sm</value>
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<value>sem_annotation_esor_sm</value>
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<value>sem_annotates</value>
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<value>sem_annotated_by</value>
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</list>
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</property>
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<property name="ontologyList">
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<list>
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<value>http://purl.org/spar/datacite/</value>
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<value>http://purl.org/dc/terms/</value>
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<value>http://www.w3.org/2006/time</value>
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<value>http://purl.dataone.org/ontologies/observation/d1-ECSO.owl</value>
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<value>http://purl.dataone.org/ontologies/provenance/ProvONE/v1/owl/provone.owl</value>
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<value>http://purl.obolibrary.org/obo/envo.owl</value>
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<value>http://purl.obolibrary.org/obo/chebi.owl</value>
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</list>
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</property>
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</bean>
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<bean id="annotation.expansion" class="org.dataone.cn.indexer.annotation.SparqlField">
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<constructor-arg name="name" value="sem_annotation" />
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<constructor-arg name="query">
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<value>
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<![CDATA[
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX owl: <http://www.w3.org/2002/07/owl#>
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SELECT ?sem_annotation
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WHERE {
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<$CONCEPT_URI> rdfs:subClassOf+ ?sem_annotation .
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}
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]]>
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</value>
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</constructor-arg>
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<!--property name="multivalue" value="false" /-->
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</bean>
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<!-- bioportal-based annotation -->
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<bean id="annotation.bioportal.expansion" class="org.dataone.cn.indexer.annotation.SparqlField">
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<constructor-arg name="name" value="sem_annotation_bioportal_sm" />
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<constructor-arg name="query">
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<value>
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<![CDATA[
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX owl: <http://www.w3.org/2002/07/owl#>
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SELECT ?sem_annotation_bioportal_sm
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WHERE {
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<$CONCEPT_URI> rdfs:subClassOf+ ?sem_annotation_bioportal_sm .
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}
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]]>
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</value>
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</constructor-arg>
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</bean>
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<bean id="annotation.bioportal.raw" class="org.dataone.cn.indexer.annotation.SparqlField">
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<constructor-arg name="name" value="sem_annotation_bioportal_raw_sm" />
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<constructor-arg name="query">
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<value>
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<![CDATA[
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX owl: <http://www.w3.org/2002/07/owl#>
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SELECT ?sem_annotation_bioportal_raw_sm
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WHERE {
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<$CONCEPT_URI> rdf:about ?sem_annotation_bioportal_raw_sm .
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}
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]]>
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</value>
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</constructor-arg>
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</bean>
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<!-- esor-based annotation -->
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<bean id="annotation.esor.expansion" class="org.dataone.cn.indexer.annotation.SparqlField">
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<constructor-arg name="name" value="sem_annotation_esor_sm" />
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<constructor-arg name="query">
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<value>
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<![CDATA[
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX owl: <http://www.w3.org/2002/07/owl#>
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SELECT ?sem_annotation_esor_sm
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WHERE {
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<$CONCEPT_URI> rdfs:subClassOf+ ?sem_annotation_esor_sm .
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}
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]]>
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</value>
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</constructor-arg>
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</bean>
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<bean id="annotation.esor.raw" class="org.dataone.cn.indexer.annotation.SparqlField">
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<constructor-arg name="name" value="sem_annotation_esor_raw_sm" />
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<constructor-arg name="query">
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<value>
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<![CDATA[
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX owl: <http://www.w3.org/2002/07/owl#>
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SELECT ?sem_annotation_esor_raw_sm
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WHERE {
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<$CONCEPT_URI> rdf:about ?sem_annotation_esor_raw_sm .
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}
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]]>
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</value>
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</constructor-arg>
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</bean>
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</beans>
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