Project

General

Profile

Bug #3565

hangs up loading data package

Added by Margaret O'Brien over 11 years ago. Updated over 10 years ago.

Status:
Resolved
Priority:
Normal
Assignee:
Category:
morpho - general
Target version:
Start date:
10/24/2008
Due date:
% Done:

0%

Estimated time:
Bugzilla-Id:
3565

Description

I've been trying to use morpho for updates on data packages that were created manually, but are valid eml201. At least 2 have hung up when loading the data package (searches work fine). Note that morpho is searching the catalog at data.piscoweb.org/catalog/metacat, not the knb.

packages that hang up: knb-lter-sbc.23, knb-lter-sbc.21

Here is the text from the .morpho/.../sdterr.log:
Name: qformat => xml
removed from window list

<pathquery version="1.2">
<local_search>false</local_search>
<network_search>true</network_search>
<querytitle>Untitled-Search-5</querytitle>
<returndoctype>-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN</returndoctype>
<returndoctype>-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN</returndoctype>
<returndoctype>-//NCEAS//eml-dataset-2.0//EN</returndoctype>
<returndoctype>-//NCEAS//resource//EN</returndoctype>
<returndoctype>eml://ecoinformatics.org/eml-2.0.0</returndoctype>
<returndoctype>eml://ecoinformatics.org/eml-2.0.1</returndoctype>
<returnfield>dataset/title</returnfield>
<returnfield>individualName/surName</returnfield>
<returnfield>keyword</returnfield>
<returnfield>entityName</returnfield>
<querygroup operator="INTERSECT">
<querygroup operator="UNION">
<querygroup operator="UNION">
<queryterm searchmode="starts-with" casesensitive="false">
<value>SBC</value>
<pathexpr>title</pathexpr>
</queryterm>
</querygroup>
</querygroup>
</querygroup>
</pathquery>

Adding window: Untitled-Search-5
(3) Executing metacat query...
(2.1) Executing metacat query...
Sending data to: http://data.piscoweb.org/catalog/metacat
HTTP Handler class is: HTTPClient.HttpURLConnection
Name: action => squery
Name: query =>
<pathquery version="1.2">
<local_search>false</local_search>
<network_search>true</network_search>
<querytitle>Untitled-Search-5</querytitle>
<returndoctype>-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN</returndoctype>
<returndoctype>-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN</returndoctype>
<returndoctype>-//NCEAS//eml-dataset-2.0//EN</returndoctype>
<returndoctype>-//NCEAS//resource//EN</returndoctype>
<returndoctype>eml://ecoinformatics.org/eml-2.0.0</returndoctype>
<returndoctype>eml://ecoinformatics.org/eml-2.0.1</returndoctype>
<returnfield>dataset/title</returnfield>
<returnfield>individualName/surName</returnfield>
<returnfield>keyword</returnfield>
<returnfield>entityName</returnfield>
<querygroup operator="INTERSECT">
<querygroup operator="UNION">
<querygroup operator="UNION">
<queryterm searchmode="starts-with" casesensitive="false">
<value>SBC</value>
<pathexpr>title</pathexpr>
</queryterm>
</querygroup>
</querygroup>
</querygroup>
</pathquery>

Name: qformat => xml
(2.3) Metacat output is:
HTTPClient.RespInputStream@109099d
(2.4) Done Executing metacat query...
Parser created is: org.apache.xerces.parsers.SAXParser
(2.43) Creating result set ...
(2.44) Creating result set ...
(2.3) Metacat output is:
HTTPClient.RespInputStream@192c4c
(2.4) Done Executing metacat query...
Parser created is: org.apache.xerces.parsers.SAXParser
(2.43) Creating result set ...
(2.44) Creating result set ...
selectedId is: knb-lter-sbc.23.2
the package name is: knb-lter-sbc.23
the number of previous version is: 1
selectedId is: knb-lter-sbc.23.2
the package name is: knb-lter-sbc.23
the number of previous version is: 1
DataPackage: Got service request to open: knb-lter-sbc.23.2 from metacat.
MetacatDataStore: getting cached file
the second line string is: ?xml-stylesheet type="text/xsl" href="eml2esa.xsl" ?
Adding window: Data Package: knb-lter-sbc.23.2
ViewContainer startUp time: 114
Exception in thread "Thread-49" java.lang.NullPointerException
at edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel.<init>(DataViewContainerPanel.java:272)
at edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin.openDataPackage(DataPackagePlugin.java:805)
at edu.ucsb.nceas.morpho.query.OpenPackageCommand$1.construct(OpenPackageCommand.java:142)
at edu.ucsb.nceas.morpho.framework.SwingWorker$2.run(SwingWorker.java:140)
at java.lang.Thread.run(Thread.java:619)

History

#1 Updated by Margaret O'Brien about 11 years ago

I figured this one out - the document had a stylesheet instruction as the second line. Morpho had no problem when that was removed.

#2 Updated by Jing Tao over 10 years ago

User figured out the reason.

#3 Updated by Redmine Admin almost 7 years ago

Original Bugzilla ID was 3565

Also available in: Atom PDF