Bug #4314
closedexception when searching ecogrid
0%
Description
When I try to search the ecogrid via kepler, I get a long exception (below). To reproduce, go to the data tab in kepler, search for "fish". You'll get an auth window. Click "login anonymously". You'll see the large exception in the console window. Kepler will take a while, but will eventually return results. Not sure what the error is about.
[run] searching..
[run] ldap authenticating...
[run] creating gui
[run] ERROR (org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem:doWork:112) The exception in query is
[run] AxisFault
[run] faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
[run] faultSubcode:
[run] faultString: java.net.ConnectException: Connection refused
[run] faultActor:
[run] faultNode:
[run] faultDetail:
[run] {http://xml.apache.org/axis/}stackTrace:java.net.ConnectException: Connection refused
[run] at java.net.PlainSocketImpl.socketConnect(Native Method)
[run] at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
[run] at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
[run] at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
[run] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:432)
[run] at java.net.Socket.connect(Socket.java:520)
[run] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[run] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
[run] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
[run] at java.lang.reflect.Method.invoke(Method.java:585)
[run] at org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:153)
[run] at org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:120)
[run] at org.apache.axis.transport.http.HTTPSender.getSocket(HTTPSender.java:191)
[run] at org.apache.axis.transport.http.HTTPSender.writeToSocket(HTTPSender.java:404)
[run] at org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:138)
[run] at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
[run] at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
[run] at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
[run] at org.apache.axis.client.AxisClient.invoke(AxisClient.java:165)
[run] at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
[run] at org.apache.axis.client.Call.invoke(Call.java:2767)
[run] at org.apache.axis.client.Call.invoke(Call.java:2443)
[run] at org.apache.axis.client.Call.invoke(Call.java:2366)
[run] at org.apache.axis.client.Call.invoke(Call.java:1812)
[run] at org.ecoinformatics.ecogrid.queryservice.stub.QueryServiceStub.query(Unknown Source)
[run] at org.ecoinformatics.ecogrid.queryservice.QueryServiceClient.query(Unknown Source)
[run] at org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem.doWork(EcogridQueryDataCacheItem.java:103)
[run] at org.kepler.objectmanager.cache.DataCacheObject.run(DataCacheObject.java:424)
[run] at java.lang.Thread.run(Thread.java:613)
[run]
[run] {http://xml.apache.org/axis/}hostname:Slickrock.local
[run]
[run] java.net.ConnectException: Connection refused
[run] at org.apache.axis.AxisFault.makeFault(AxisFault.java:101)
[run] at org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:154)
[run] at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
[run] at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
[run] at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
[run] at org.apache.axis.client.AxisClient.invoke(AxisClient.java:165)
[run] at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
[run] at org.apache.axis.client.Call.invoke(Call.java:2767)
[run] at org.apache.axis.client.Call.invoke(Call.java:2443)
[run] at org.apache.axis.client.Call.invoke(Call.java:2366)
[run] at org.apache.axis.client.Call.invoke(Call.java:1812)
[run] at org.ecoinformatics.ecogrid.queryservice.stub.QueryServiceStub.query(Unknown Source)
[run] at org.ecoinformatics.ecogrid.queryservice.QueryServiceClient.query(Unknown Source)
[run] at org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem.doWork(EcogridQueryDataCacheItem.java:103)
[run] at org.kepler.objectmanager.cache.DataCacheObject.run(DataCacheObject.java:424)
[run] at java.lang.Thread.run(Thread.java:613)
[run] Caused by: java.net.ConnectException: Connection refused
[run] at java.net.PlainSocketImpl.socketConnect(Native Method)
[run] at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
[run] at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
[run] at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
[run] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:432)
[run] at java.net.Socket.connect(Socket.java:520)
[run] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[run] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
[run] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
[run] at java.lang.reflect.Method.invoke(Method.java:585)
[run] at org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:153)
[run] at org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:120)
[run] at org.apache.axis.transport.http.HTTPSender.getSocket(HTTPSender.java:191)
[run] at org.apache.axis.transport.http.HTTPSender.writeToSocket(HTTPSender.java:404)
[run] at org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:138)
[run] ... 14 more
[run] disposing
[run] DONE disposing
[run] EcogridUtils: The time to create instance is =========== 0
[run] Authenticating with user: uid=kepler,o=unaffiliated,dc=ecoinformatics,dc=org and password: **
[run] C8071DD04D621348CF47759CC7BE3190
Related issues
Updated by Chad Berkley about 15 years ago
I also see this error when trying to access the data from one of the dragged "cans":
[run] ERROR (org.ecoinformatics.seek.dataquery.DBTablesGenerator:generateDBTextTable:481) The error in generateDBTable is Unexpected token: ? in statement [CREATE TEXT TABLE T1850755562(SpeciesOrTrophicGroup LONGVARCHAR,Code LONGVARCHAR,IndPerM]
[run] ERROR (org.ecoinformatics.seek.dataquery.DBTablesGenerator:generateDBTextTable:481) The error in generateDBTable is bad TEXT table source file - line number: 1 java.lang.NumberFormatException: For input string: "Err:503" in statement [SET TABLE T2111647632 SOURCE "urn.lsid.localdata.b441b457.0.0;fs=,"]
Updated by Chad Berkley about 15 years ago
Verify this is still happening, close this bug if not.
Updated by Jing Tao about 15 years ago
The reason is that some services, e.g. digir service and local service, are down. When I change their default value, the error message has gone.
Updated by Jing Tao about 15 years ago
The bug was fixed after removing the hosts which are down.