Project

General

Profile

Bug #5704

update documentation for species binomials

Added by Margaret O'Brien over 6 years ago.

Status:
New
Priority:
Normal
Assignee:
Category:
eml - general bugs
Target version:
Start date:
09/04/2012
Due date:
% Done:

0%

Estimated time:
Bugzilla-Id:
5704

Description

The EML documentation needs an update to reflect correct practice when including a taxonomic species name. Taxonomically speaking, the 'species name' is a genus and the specific epithet. But looking at it from a strictly hierarchical node structure the specific epithet looks and acts like the other nodes. However a node 'alterniflora' has no taxon rank by itself.

LTER already reccommends this construction in its Best Practices, but actual implementations are inconsistent, perhaps because of the normative documentation.

Another note: The normative docs also seem to refer to "Acer rubrum" as the 'common name' of Red Maple, which is incorrect..

Here is an example of 2 implementations sent to eml-dev (from Wade Sheldon):

with binomial:

<taxonomicClassification>
<taxonRankName>Genus</taxonRankName>
<taxonRankValue>Spartina</taxonRankValue>
<taxonomicClassification>
<taxonRankName>Species</taxonRankName>
<taxonRankValue>Spartina alterniflora</taxonRankValue>
</taxonomicClassification>
</taxonomicClassification>

without binomial:

<taxonomicClassification>
<taxonRankName>Genus</taxonRankName>
<taxonRankValue>Spartina</taxonRankValue>
<taxonomicClassification>
<taxonRankName>Species</taxonRankName>
<taxonRankValue>alterniflora</taxonRankValue>
</taxonomicClassification>
</taxonomicClassification>

Here is the text from the EML 2.1.1 normative docs:
(http://knb.ecoinformatics.org/software/eml/eml-2.1.1/eml-coverage.html)
seem to suggest the opposite approach:

"The name representing the taxonomic rank of the taxon being described.
The values included may be referenced from an authoritative source such
as the Integrated Taxonomic Information System (ITIS)in the U.S.
(http://www/itis.usda.gov) and in Canada
(http://sis.agr.gc.ca/pls/itisca/taxaget). Also, Species2000 is another
source of taxonomic information, found at (http://www.sp2000.org)
Example(s):
Acer would be an example of a genus rank value, and rubrum would be an
example of a species rank value, together indicating the common name of
red maple. It is recommended to start with Kingdom and include ranks
down to the most detailed level possible."

History

#1 Updated by Redmine Admin over 5 years ago

Original Bugzilla ID was 5704

Also available in: Atom PDF