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From 01/16/2011 to 02/14/2011

02/14/2011

02:48 PM Bug #5262: EML document owner can't read the document
Hrrm, it seems our code doesn't trim the username.
In AuthLdap.authenticateTLS:
I added a information line to displ...
Jing Tao
01:47 PM Bug #5262: EML document owner can't read the document
Hi, Matt:
Yes, the user name with extra space can login. The username field in EcogridWriter is used for login. The ...
Jing Tao
11:54 AM Bug #5262: EML document owner can't read the document
Trimming strings on input like this is always dangerous. My guess is that the bug arises because someone through a '... Matt Jones
11:42 AM Bug #5262: EML document owner can't read the document
Somehow, in EcogridWriter actor, author put an extra space after uid=kepler,o=unaffiliated,dc=ecoinformatics,dc=org.
...
Jing Tao
02:03 PM Revision 5956 (metacat): Updated DROP script that was missing tables and sequences.
Matt Jones
11:45 AM Revision 5955 (metacat): added file extension for txt or csv files
berkley
11:39 AM Revision 5954 (metacat): correctly pass the search class and value when perfroming Protocol-based and Measurement-based queries (copy and paste oversight).
ben leinfelder

02/13/2011

11:20 AM Revision 5953 (metacat): To support the generatemissingsystemmetadata REST call, modified CrudService.createSystemMetadata() to use DataoneEMLParser and further determine object formats from EML metadata. Formats currently supported are text/plain, text/csv, image/[jpg|jp2|bmp|tiff|png], and only for EML documents with 'ecogrid://' defined entity urls.
Todo: transition to using the EML Data Manager library's DataPackage parsers to handle a broader set of metadata type... Chris Jones

02/11/2011

02:56 PM Revision 5952 (metacat): make Data Object link more subtle since it now appears for each attribute
ben leinfelder
01:57 PM Revision 5951 (metacat): update skin to use new annotation schema - http://ecoinformatics.org/sms/annotation.1.0beta1
ben leinfelder
01:48 PM Revision 5950 (metacat): adding more debuggin and fixing bug with systemmetadata
berkley
11:42 AM Revision 5949 (metacat): new d1_common jar
berkley
10:46 AM Bug #5300: SchemaLocationResolver fails to download included xsd files
Add a new class XMLSchemaPaser which can extract the included schema information.
In XMLSchemaService class, add a ne...
Jing Tao
06:09 PM Revision 5948 (metacat): Make the schema with included schemas valid.
Jing Tao
06:08 PM Revision 5947 (metacat): Add a xml file for inserting during test.
Jing Tao
06:07 PM Revision 5946 (metacat): Add a method to test download a schema with included schemas.
Jing Tao
06:06 PM Revision 5945 (metacat): Add code to download the included schema.
Jing Tao
04:17 PM Revision 5944 (metacat): fixed replication bug where systemmetadata was not getting procssed correctly
berkley

02/10/2011

10:56 AM Revision 5943 (metacat): think I fixed the connection problem. one connection in IdentifierManager was being leaked. added more debug info in case it happens again
berkley
10:27 AM Revision 5942 (metacat): Add a test file for XMLSchemaServcieTest.
Jing Tao
10:27 AM Revision 5941 (metacat): Add a static method to get base url base on a schema url.
Jing Tao
05:03 PM Revision 5940 (metacat): Add a junit test file for testing the XMLSchemaParser class.
Jing Tao
05:02 PM Revision 5939 (metacat): Add test schema for downloading included xsd file.
Jing Tao
05:00 PM Revision 5938 (metacat): A sax handler class can get included schema path.
Jing Tao

02/09/2011

02:37 PM Bug #5300: SchemaLocationResolver fails to download included xsd files
Here is a way probably resolve this issue:
In edu.ucsb.nceas.metacat.service.XMLSchemaService lcass, we will add two...
Jing Tao
01:40 PM Bug #5300 (Resolved): SchemaLocationResolver fails to download included xsd files
I am trying to insert an eml document with embedded sensorML into metacat.
But i get the error:
knb 20110209-11:20:...
Jing Tao
11:41 AM Bug #4307: Upgrade Geoserver to prevent Metacat crashes
Shape files were corrupted by the ant build (filtered copy treated them as text).
Configuration allows for bypass and...
ben leinfelder
11:37 AM Bug #2188: replace web client with OpenLayers
New OpenLayers implementation is now in trunk - old MapBuilder has been removed. ben leinfelder
11:36 AM Revision 5937 (metacat): remove old spatial templates
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2188 ben leinfelder
11:34 AM Revision 5936 (metacat): remove JPL NASA layer - no longer operational
ben leinfelder
10:02 AM Revision 5935 (metacat): photoshop file for creating the on/off query widget for openlayers
ben leinfelder
09:55 AM Revision 5934 (metacat): remove sanparks boundaries from the default map, but allow them to be added as an additional layer from the saeon/sanparks skin.
use css to style the spatial query search widget control
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2188
ben leinfelder

02/08/2011

02:08 PM Revision 5933 (metacat): added some debug info to DBConnectionPool
berkley
02:06 PM Revision 5932 (metacat): include title for the spatial query control widget (on hover)
ben leinfelder
12:06 PM Revision 5931 (metacat): removed comments from crudservicetest
berkley
12:05 PM Revision 5930 (metacat): fixed typo that prevented replication
berkley
11:46 AM Revision 5929 (metacat): fixed node response bug
berkley
11:30 AM Revision 5928 (metacat): add custom Pan/Zoom/Query control. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2188
ben leinfelder
11:30 AM Bug #2188: replace web client with OpenLayers
added new map control for metacat spatial query. now you can Pan/Zoom/Search depending on which control is selected ben leinfelder
10:25 AM Bug #5288: Metacat got "java.lang.OutOfMemoryError: PermGen space" after new geoserver update
GeoServer recommends increasing your container's default settings:
http://docs.geoserver.org/stable/en/user/productio...
ben leinfelder

02/07/2011

03:41 PM Revision 5927 (metacat): fixed update problem
berkley
02:49 PM Revision 5926 (metacat): put the pid in the info section of the url
berkley
11:44 AM Bug #5294: Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
It turns out that Metacat is using a customized properties file management system.It makes the properties file more r... Jing Tao
11:31 AM Revision 5925 (metacat): Add a comment to the new target install-configured-metacat.
Jing Tao
11:20 AM Revision 5924 (metacat): Using echo to replace propertyfile in order to avoiding character escape.
Jing Tao
10:50 AM Revision 5923 (metacat): fixed content type problem where csv files were set as text/xml
berkley

02/05/2011

06:34 PM Revision 5922 (metacat): fixed problem with count in listObjects()
berkley
06:14 PM Revision 5921 (metacat): Cleaned up warnings, removed dead code.
Matt Jones
05:53 PM Revision 5920 (metacat): Updated to most recent DataONE libraries. Updated CrudService to set the correct origin MN and auth MN in system metadata. Refactored exception passing. More work to come in generating SystemMetadata.
Matt Jones
05:31 PM Bug #5294: Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
in above comment, can = can NOT :) Jing Tao
05:29 PM Bug #5294: Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
The first issue in above comment relates to the second one. When metacat initializes the db service, it can recognize... Jing Tao
04:54 PM Bug #5294: Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
I will add the target to check the database.
I added two targets into the build.xml. One will set configutil.* to be...
Jing Tao
04:13 PM Bug #5294: Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
This sounds good, Jing. One other issue is that the admin servlet runs SQL scripts to create/update databases, etc. ... Matt Jones
04:45 PM Revision 5919 (metacat): Add a target to change the configuration value to be true.
Jing Tao

02/04/2011

03:15 PM Bug #5294: Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
I just tested if we set:
configutil.propertiesConfigured=false
configutil.authConfigured=false
configutil.skinsConfig...
Jing Tao
01:03 PM Bug #5294: Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
<matt> another possibility would be to create a new target in the build that sets those properties explicitly for the... Jing Tao
11:54 AM Bug #5294 (New): Enable Junit test on http://dev-testing.dataone.org:8080/hudson/job/Metacat/
Currently in hudson test, the build will run "ant clean war" to verify the new commitment code would not break the bu... Jing Tao
01:05 PM Revision 5918 (metacat): removed debug statements
berkley
12:39 PM Revision 5917 (metacat): fixed bugs in listObjects
berkley
11:30 AM Revision 5916 (metacat): Add in correct node references in system metadata.
Matt Jones
10:29 AM Revision 5915 (metacat): Cleanup harvester exceptions and generics.
Matt Jones
06:17 AM Revision 5914 (metacat): remove httpclient 3.1 and custom-built httpclient.jar
rework MetacatClient (and other classes) to use httpclient 4
updated build to not create httpclient.jar
encoding test...
ben leinfelder
05:57 AM Revision 5913 (metacat): blank configuration value should be treated the same as null
ben leinfelder
07:45 PM Revision 5912 (metacat): Fix the MetadataTypeRegisterTest because it had the wrong URI for METS.
Matt Jones
05:10 PM Revision 5911 (metacat): Added download links.
Matt Jones
05:06 PM Revision 5910 (metacat): the new name of the jar file.
Jing Tao
05:05 PM Revision 5909 (metacat): rename this jar file to xercesImpl-2.11.0.jar
Jing Tao
04:54 PM Revision 5908 (metacat): Additional layout and styles for metacat documentation.
Matt Jones
04:01 PM Bug #5291: Need update xerces jar file
Here are what i did:
1) Removed the following files:
tao@pacific:~/project/metacat$ rm ./lib/spatial/geoserver/WEB-IN...
Jing Tao

02/03/2011

03:58 PM Bug #5291 (Resolved): Need update xerces jar file
xcerces 2.7 complains that the sensorML schema is invalid. However, xmlSpy and oxygen don't.
I tried to use xerces...
Jing Tao
03:42 PM Revision 5907 (metacat): UPdated documentation for the web.
Matt Jones
03:39 PM Revision 5906 (metacat): few bug fixes for listObjects
berkley
03:38 PM Revision 5905 (metacat): Add new version of jar file from xerces 2.11.0.
Jing Tao
03:37 PM Revision 5904 (metacat): Add a new version of aml-apis jar file from xerces 2.11.0.
Jing Tao
03:36 PM Revision 5903 (metacat): Add new version of xerces jar file.
Jing Tao
03:36 PM Revision 5902 (metacat): Add jar file from xerces 2.11.0.
Jing Tao
03:34 PM Revision 5901 (metacat): remove old version of xerces jar file.
Jing Tao
03:34 PM Revision 5900 (metacat): Remove redundant jar file.
Jing Tao
03:33 PM Revision 5899 (metacat): remove redundant jar file.
Jing Tao
03:32 PM Revision 5898 (metacat): remove redundant jar file.
Jing Tao
03:29 PM Revision 5897 (metacat): remove redundant jar file.
Jing Tao
03:28 PM Revision 5896 (metacat): Remove redundant jar file.
Jing Tao
03:25 PM Revision 5895 (metacat): added code to do database query for listObjects
berkley
02:06 PM Revision 5894 (metacat): new properties for d1 MN
berkley
01:19 PM Revision 5893 (metacat): Cleaned up unused imports.
Matt Jones
10:21 AM Revision 5892 (metacat): update to ECOGRID_1_2_2RC2 tag
ben leinfelder
09:49 AM Revision 5891 (metacat): remove the empty dir.
Jing Tao
09:47 AM Revision 5890 (metacat): This is redundant to the WorkflowSchedulerCleintTest in wsfscheduler svn module.
Jing Tao
09:21 AM Revision 5889 (metacat): use more unique scope (document id prefix) so that getlastdocid runs successfully. use superclass generateDocumentId() method
ben leinfelder
05:36 PM Revision 5888 (metacat): pass the root exception message up the call chain so that it can effectively be reported as a helpful error message. also, the JUnit test expects the specific error message (SchemaRegistryTest)
ben leinfelder

02/02/2011

03:52 PM Revision 5887 (metacat): adding fields for additional system metadata info
berkley
11:43 AM Revision 5886 (metacat): use the read() method instead of manually calling with parameters
ben leinfelder
10:54 AM Revision 5885 (metacat): new paths for metacat populator
berkley
10:54 AM Revision 5884 (metacat): new common and client jar
berkley
07:15 PM Revision 5883 (metacat): remove this optional ant jar - seems to conflict with other versions of ant when running junit tests. also, it's not needed for the geotools use we have
ben leinfelder
05:13 PM Bug #5288 (Resolved): Metacat got "java.lang.OutOfMemoryError: PermGen space" after new geoserver update
Today, I updated my metacat source tree to get the changes on the geoserver part.
After installing the new Metaca...
Jing Tao
05:05 PM Revision 5882 (metacat): Add the junit jar file back to the lib. There is no change needed in build.xml.
Jing Tao

02/01/2011

12:13 PM Revision 5881 (metacat): some new code for debugging mmp
berkley
11:53 AM Revision 5880 (metacat): Update to v1.10.0 and include new GeoServer configuration instructions
ben leinfelder
11:52 AM Revision 5879 (metacat): correct typo in instructions
ben leinfelder
10:54 AM Revision 5878 (metacat): Using <xsl:value-of select="."/> to replace <xsl:value-of select="./"/>. Somehow, the latter is not valid anymore.
Jing Tao
04:16 PM Revision 5877 (metacat): include bypass option
ben leinfelder

01/31/2011

03:51 PM Revision 5876 (metacat): removing old httpclient jar
berkley
03:49 PM Revision 5875 (metacat): removing utilities.jar
berkley
03:48 PM Revision 5874 (metacat): updated the populator
berkley
03:48 PM Revision 5873 (metacat): new http libs
berkley
03:31 PM Revision 5872 (metacat): include geoserver.war in the 'install' target but also allow 'bypass' option when geoserver is not deployed next to metacat
ben leinfelder
01:52 PM Revision 5871 (metacat): merge documentation from 1.9.3 branch before adding 1.10.0 changes
ben leinfelder
01:30 PM Revision 5870 (metacat): added code to run an squery for listObjects instead of an anyfield query
berkley
01:22 PM Revision 5869 (metacat): fixed compile errors
berkley
11:56 AM Revision 5868 (metacat): remove "Bypass" action
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4307 ben leinfelder
11:55 AM Revision 5867 (metacat): always re-write web.xml in case geoserver has been redeployed
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4307 ben leinfelder
11:29 AM Revision 5866 (metacat): include geoserver.war when building the distribution
move xalan jar into common lib where it is used to compile lsid support
http://bugzilla.ecoinformatics.org/show_bug.c...
ben leinfelder

01/29/2011

07:22 PM Revision 5865 (metacat): do not use "filtering" on binary shape files - they will be corrupt
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4307 ben leinfelder
05:53 PM Bug #4307: Upgrade Geoserver to prevent Metacat crashes
I seem to have introduced invalid shapefiles - perhaps when committing them to SVN. Will have to check alternate chec... ben leinfelder
05:34 PM Bug #4307: Upgrade Geoserver to prevent Metacat crashes
keeping this opened until additional tasks are completed:
-package geoserver.war (v2.0.2) along with Metacat's knb.wa...
ben leinfelder
05:30 PM Bug #2188: replace web client with OpenLayers
TODO:
-create a way for skins to reuse the common map rendering but still perform spatial queries with their results ...
ben leinfelder
05:18 PM Revision 5864 (metacat): use the demis layer as default
ben leinfelder
05:12 PM Revision 5863 (metacat): remove cache files - each instance should create these when needed
ben leinfelder

01/28/2011

03:54 PM Revision 5862 (metacat): use OpenLayers implementation for rendering map/spatial search - has it's own copy of locations and a different bound for the map
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2188 ben leinfelder
03:53 PM Revision 5861 (metacat): use OpenLayers implementation for rendering map/spatial search
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2188 ben leinfelder
03:52 PM Revision 5860 (metacat): Modified MetacatPopulator to deal with change in D1Client static methods.
Matt Jones
03:30 PM Revision 5859 (metacat): include name attribute for location selection widget
ben leinfelder
03:00 PM Revision 5858 (metacat): break the map generation into parts for easier re-use/customization in other skins
ben leinfelder
01:59 PM Revision 5857 (metacat): added more code for new mmp requests
berkley
12:25 PM Bug #2180: Make it easier for admin to add new layers
It's true that Geoserver does all of this except including the new layer in a rendered map in Metacat.We could includ... ben leinfelder
12:21 PM Bug #4680: Geoserver StringIndexOutOfBoundsException
We are now using Geotools 2.6.4 ben leinfelder
12:19 PM Bug #2188: replace web client with OpenLayers
Re-implementing the features we have in MapBuilder in OpenLayers:
1. named locations drop down
2. spatial query when ...
ben leinfelder
12:16 PM Bug #4307: Upgrade Geoserver to prevent Metacat crashes
We are now using Geotools 2.6.4 (from Geoserver 2.0.2) to read/write the shape files.
Geoserver is deployed in a diff...
ben leinfelder
12:09 PM Revision 5856 (metacat): include standard list of named locations - zoom map to that location when selected
ben leinfelder

01/27/2011

03:59 PM Revision 5855 (metacat): include default password for geoserver admin - though metacat need not really know what it is.
ben leinfelder
03:51 PM Revision 5854 (metacat): bug fixes
berkley
03:23 PM Revision 5853 (metacat): already have log4j (1.2.12)
ben leinfelder
03:21 PM Revision 5852 (metacat): remove older jars to avoid duplication/complications
ben leinfelder
03:08 PM Revision 5851 (metacat): refactor checksum and some other stuff
berkley
02:44 PM Revision 5850 (metacat): include a default location for the Geoserver data directory (under the metcat deployment)
ben leinfelder
12:17 PM Revision 5849 (metacat): added some debug lines
berkley
09:52 AM Revision 5848 (metacat): new common lib
berkley
04:11 PM Revision 5847 (metacat): rework geoserver configuration:
-geoserver context is set to 'geoserver' by default, but can be reconfigured
-data directory is set in the geoserver ...
ben leinfelder
04:06 PM Revision 5846 (metacat): add boolean return to indicate whether or not a property was modified
ben leinfelder

01/26/2011

05:02 PM Revision 5845 (metacat): invoke spatial search when bounding box is drawn or click on map
ben leinfelder

01/25/2011

03:50 PM Revision 5844 (metacat): trying to get the new MMP handler working with ResourceHandler
berkley
03:18 PM Revision 5843 (metacat): updating commons-fileupload to 1.2.2
berkley
02:49 PM Revision 5842 (metacat): Change the ecogrid tag to tags/ECOGRID_1_2_2_RC1.
Jing Tao
01:57 PM Revision 5841 (metacat): fullclean will remove entire ecogrid dir rather than just two files.
Jing Tao
01:19 PM Revision 5840 (metacat): update the SLD for data boundary layer
ben leinfelder
11:08 AM Revision 5839 (metacat): omit spatial exclusions that do not exist (part of the geoserver removal)
ben leinfelder

01/24/2011

03:32 PM Revision 5838 (metacat): replicate works on metacat now. just waiting for roberts changes to the mmp clients
berkley

01/22/2011

04:50 PM Revision 5837 (metacat): Change the column width again.
Jing Tao
04:46 PM Revision 5836 (metacat): change the column width of the workflow run table.
Jing Tao
04:40 PM Revision 5835 (metacat): use local shape files if the Geoserver env variable is not set. They might also be the same
ben leinfelder
04:28 PM Revision 5834 (metacat): Fixed a bug that pdf file name can't be got.
Jing Tao
04:18 PM Revision 5833 (metacat): include new data dir contents (will be pointed at by geoserver 2.0.2)
ben leinfelder
04:15 PM Revision 5832 (metacat): remove old data contents
ben leinfelder
04:11 PM Revision 5831 (metacat): geoserver upgrade (in TRUNK thins time!):
-remove embedded geoserver
-include geotools api and update spatial harvesting
ben leinfelder

01/21/2011

03:08 PM Revision 5829 (metacat): geoserver upgrade:
-remove embedded geoserver
-include geotools api and update spatial harvesting
-include simple template for using ma...
ben leinfelder
02:27 PM Revision 5827 (metacat): new jar with common code
berkley
02:27 PM Revision 5826 (metacat): new mmp code
berkley
10:44 AM Revision 5825 (metacat): Change unschedule to disable, reschedule to enable.
Jing Tao
10:43 AM Revision 5824 (metacat): Change the column size according the text change.
Jing Tao
05:46 PM Revision 5823 (metacat): Modify the column width to show the Delete link.
Jing Tao
04:13 PM Revision 5822 (metacat): Add more parameters - workflowid, workflowname and karid to the unscheduleWorkflow, rescheduleWorkflow and delete actions.
Jing Tao

01/19/2011

03:02 PM Revision 5821 (metacat): Add more parameters such as sessionid, authenticationURL and authorizationURL for unscheduleWorkflow, rescheduleWorkflow and delete action.
Jing Tao
02:37 PM Revision 5820 (metacat): this dir is empty now and should be removed
ben leinfelder
10:47 AM Revision 5819 (metacat): Fixed a syntax error.
Jing Tao
06:28 PM Revision 5818 (metacat): Add more parameters to the servlet.
Jing Tao
05:09 PM Revision 5817 (metacat): Add authorizationPath,authenticationPath and queryPath for workflow scheduler.
Jing Tao
05:04 PM Revision 5816 (metacat): include 'value' translations when searching EML 2.1.1 (squery and query actions)
ben leinfelder
05:03 PM Revision 5815 (metacat): use a non-runtime classpath to locate the axis tasks (required when I upgraded to ant 1.8)
ben leinfelder
04:41 PM Revision 5814 (metacat): Add a new property - destination reporsitory name in execution engine part.
Jing Tao
04:38 PM Revision 5813 (metacat): Add new selection - destination repository in tpc scheduler.
Jing Tao
 

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