Activity
From 02/12/2011 to 03/13/2011
03/12/2011
03/04/2011
- 03:23 PM Revision 6010 (metacat): replace derik's settings with previous version
- 03:14 PM Revision 6009 (metacat): add paths to indexPaths, and kar namespaces to indexNamespaces for Kepler Workflow Run Manager run-kar queries
- 02:52 PM Revision 6008 (metacat): include simple union data for search results if they are present in the resultset document
- 09:56 AM Revision 6007 (metacat): include temporal coverage dates in the path index - (for opendap metadata queries)
03/03/2011
- 08:15 AM Revision 6006 (metacat): Fixed the testNCEASLogin() password that I mistakenly changed.
- 07:47 AM Revision 6005 (metacat): Now that MetacatHandler creates GUID identifier mappings and system metadata, many of the tests in IdentifierManagerTest were failing that were manually creating id mappings and system metadata.
- Modified testCreateMapping() and testCreateSystemMetadataMapping() to use docids that haven't been inserted to just e...
03/02/2011
- 04:44 PM Revision 6004 (metacat): Added a new test method testDeleteDocumentByGUID() to ensure MetacatHandler can delete based on GUID, but fall back to docid if the GUID isn't present. Modified CrudServiceTest and made some private methods public to leverage the D1 REST calls in that library (i.e. create() a doc with a GUID).
- 02:47 PM Revision 6003 (metacat): The DataONE service API jar has been renamed to d1_common_java-0.5.0.jar, updated the build file accordingly. Added debug echo of the test classpath.
- 02:14 PM Revision 6002 (metacat): hide the data section unless there is actually data to display
- 02:12 PM Revision 6001 (metacat): DocumentImpl.delete() now throws finer grained exceptions (not a general exception). Consequently, the classes that call it have been updated to handle the thrown exceptions, including CrudService, ReplicationHandler, and ReplicationService.
- 10:39 AM Revision 6000 (metacat): refactor the names of these Data Manager implementation classes so that it's easier to use them with the default/local versions of similar. These classes utilize Metacat-specific configuration values rather than relying soley on the bundles that are used in the stand-alone DM lib.
03/01/2011
- 02:00 PM Revision 5999 (metacat): render the <data/> CDATA section in <pre/> - it's a csv string
- 09:13 AM Revision 5998 (metacat): To support GUIDs in MetacatHandler.handleDeleteAction(), I've added in a new method:
- deleteFromMetacat() - deletes a document based on the docid
This factors the deletion code out of handleDeleteAction(...
02/28/2011
- 02:42 PM Revision 5997 (metacat): only include data value/operator when present in the form
- 02:42 PM Revision 5996 (metacat): refresh search when the data operator changes (changing the value is less clear...keyup event seems too eager)
- 11:57 AM Revision 5995 (metacat): use correct operators
02/25/2011
02/22/2011
- 09:46 AM Bug #5316: Interactive map doesn't work with firefox
- This is a known issue with the old MapBuilder interface used to render the spatial layers in Metacat 1.9.x.
The forth...
02/19/2011
- 06:57 AM Bug #5316 (Resolved): Interactive map doesn't work with firefox
- The interactive map, for example
http://knb.ecoinformatics.org/knb/style/skins/nceas/map.jsp
doesn't work with ...
02/18/2011
- 12:28 PM Revision 5992 (metacat): turn off the databounds layer by default
- 12:09 PM Revision 5991 (metacat): new lines were showing up in the html source becuase of whitespace in this - removed the white space and the new lines are gone...
- 11:54 AM Revision 5990 (metacat): restyle the eml display and resultset after applying new eml css to the KNB L+F
- 11:16 AM Revision 5989 (metacat): new jar files from common and client
- 10:59 AM Revision 5988 (metacat): fixed width issue with default header
- 10:59 AM Revision 5987 (metacat): new files for mets style
- 10:10 AM Revision 5986 (metacat): [untested] loop through each origin[ator] to make a row for them
02/17/2011
- 05:16 PM Revision 5985 (metacat): restyle the resultset after applying new eml css
- use more robust form-submission js for the datapackage links
- 04:30 PM Revision 5984 (metacat): check for 'null' as well as 'public' user when rendering the header Login/Logout option
- 03:44 PM Revision 5983 (metacat): restyle default eml rendering using ESA look + feel
- 12:11 PM Revision 5982 (metacat): include eml css and then adjust lter skin to accommodate the new xsls
- 11:50 AM Revision 5981 (metacat): adjust stylesheets to accommodate new default eml rendering
- 11:28 AM Revision 5980 (metacat): use latest eml style tag
- 11:24 AM Revision 5979 (metacat): adjust stylesheets to accommodate new default eml rendering
- 09:45 AM Revision 5978 (metacat): use square edges for the borders around table groups and subgroups
- 02:57 AM Revision 5977 (metacat): These are fairly significant changes to MetacatHandler.handleInsertOrUpdateAction() that add in support for creation or update of GUIDs and SystemMetadata. Upon insertion or update of DataPackages from non-DataONE aware clients (such as Morpho), the identifier table is updated by creating a GUID, and the systemmetadata table is updated with fields after the EML document is parsed for distribution information and entity typing. System Metadata documents are also generated and inserted into Metacat. The list of data entities is iterated over and System Metadata is generated for each data file as well.
- 02:39 AM Revision 5976 (metacat): In MetacatHandler I've removed updateSystemMetadata() in favor of additions to insertOrUpdateSystemMetadata(). Modified createSystemMetadata() to reflect the changes as well.
02/16/2011
- 06:23 PM Revision 5975 (metacat): Modified MetacatHandler.createSystemMetadata() to take a localId, not a guid as an argument since there are times when the guid has yet to have been created, and it is created in this method if so.
- Also, put the read() call to get the InputStream of the data/metadata document into it's own try/catch statement.
- 04:36 PM Revision 5974 (metacat): adjust to fit new EML look and feel
- 03:58 PM Revision 5973 (metacat): additional overrides for color
- 03:58 PM Revision 5972 (metacat): added mets to default skin
- 03:25 PM Revision 5971 (metacat): use white links override only in header menu
- 03:11 PM Revision 5970 (metacat): force the leftnav section to wrap their links
- 02:40 PM Revision 5969 (metacat): override problematic CSS properties that were introduced as part of the new look and feel for default EML display
- 01:56 PM Revision 5968 (metacat): Somehow missed adding in javadoc for read(). Here it is.
- 01:52 PM Revision 5967 (metacat): For now, getSystemMetadata() will be private like the other *SystemMetadata() methods.
- 01:47 PM Revision 5966 (metacat): Modified MetacatHandler, updated the getSystemMetadata() method to now use read() and deserializeSystemMetadata() to produce the SystemMetadata object. Exceptions are pushed up the stack, and so accordingly, modified createSystemMetadata() to reflect the changes.
- 01:44 PM Revision 5965 (metacat): stylesheet/skins for mets data
- 11:38 AM Revision 5964 (metacat): use newer EML stylesheet tag
- 11:18 AM Revision 5963 (metacat): correctly include table cells for xsl
- 09:25 AM Revision 5962 (metacat): Modified MetacatHandler, added createSystemMetadata() - generates SystemMetadata objects for newly inserted data or documents. This is intended to be used from handleInsertOrUpdateAction(), and only for documents being inserted from clients that don't support the DataONE interface. The method parses EML documents to discover data entities, and updates the system metadata for those entries, with support for describes and describedBy metadata. Currently doesn't handle FGDC, etc. documents.
- Added sizeOfStream() - Find the size (in bytes) of a stream. Note: This needs to refactored out of MetacatHandler and...
- 09:14 AM Revision 5961 (metacat): Modified MetacatHandler, added three methods:
- getSystemMetadata() - returns a SystemMetadata object from the systemmetadata table using the given GUID. Stub only.
... - 09:10 AM Revision 5960 (metacat): Modified MetacatHandler and added two methods:
- serializeSystemMetadata() - Serialize a SystemMetadata object to XML string
deserializeSystemMetadata() - Deserialize... - 09:07 AM Revision 5959 (metacat): Modified MetacatHandler, added read() - Read a document from metacat and return an InputStream. The XML or data document should be on disk, but if not, read from the metacat database. This method should be optimized, along with others, to not write stream data to disk for performance reasons.
- 09:06 AM Revision 5958 (metacat): To support generation of SystemMetadata and GUIDs, added a number of methods to MetacatHandler that are also in CrudService(). CrudService should eventually be refactored to use the handler methods. Added:
- readFromFilesystem() - Read a file from Metacat's configured file system data directory, and return a FileInputStream...
02/15/2011
02/14/2011
- 02:48 PM Bug #5262: EML document owner can't read the document
- Hrrm, it seems our code doesn't trim the username.
In AuthLdap.authenticateTLS:
I added a information line to displ... - 01:47 PM Bug #5262: EML document owner can't read the document
- Hi, Matt:
Yes, the user name with extra space can login. The username field in EcogridWriter is used for login. The ... - 11:54 AM Bug #5262: EML document owner can't read the document
- Trimming strings on input like this is always dangerous. My guess is that the bug arises because someone through a '...
- 11:42 AM Bug #5262: EML document owner can't read the document
- Somehow, in EcogridWriter actor, author put an extra space after uid=kepler,o=unaffiliated,dc=ecoinformatics,dc=org.
... - 02:03 PM Revision 5956 (metacat): Updated DROP script that was missing tables and sequences.
- 11:45 AM Revision 5955 (metacat): added file extension for txt or csv files
- 11:39 AM Revision 5954 (metacat): correctly pass the search class and value when perfroming Protocol-based and Measurement-based queries (copy and paste oversight).
02/13/2011
- 11:20 AM Revision 5953 (metacat): To support the generatemissingsystemmetadata REST call, modified CrudService.createSystemMetadata() to use DataoneEMLParser and further determine object formats from EML metadata. Formats currently supported are text/plain, text/csv, image/[jpg|jp2|bmp|tiff|png], and only for EML documents with 'ecogrid://' defined entity urls.
- Todo: transition to using the EML Data Manager library's DataPackage parsers to handle a broader set of metadata type...
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