Activity
From 04/05/2012 to 05/04/2012
05/04/2012
- 04:29 PM Bug #5518: Track down the performance issue of metacat query.
- Yeah. Kepler issues a query for different metadata type because the ecogrid could handle only one return doctype. I b...
- 03:26 PM Bug #5518: Track down the performance issue of metacat query.
- Running the same query (well, with "Insect" (not plural) so the results were not cached) with 50 threads makes this p...
- 02:43 PM Bug #5518: Track down the performance issue of metacat query.
- I wrote a small test that issues the same Metacat query to a given server with parallel threads (25 for this example)...
- 02:50 PM Revision 7167 (metacat): test for running concurrent Metacat queries to mimic Kepler data search.
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5518
05/02/2012
- 04:21 PM Revision 7166 (metacat): check if person's equivalentIdentity list is null before processing recursively
- https://redmine.dataone.org/issues/2689
- 03:59 PM Revision 7165 (metacat): D1 common lib AuthUtils update
- 03:47 PM Bug #5518: Track down the performance issue of metacat query.
- There seems to be renewed concern that this is not resolved.
During the Kepler/sensor workshop Matt reported query pe... - 09:11 AM Revision 7164 (metacat): include testSynchronizationFailed() and call as the CN subject so that it is authorized.
- 09:06 AM Revision 7163 (metacat): use MN (self) as the Session.subject so that the MN.delete() call is successful.
- 08:58 AM Revision 7162 (metacat): handle authorization for delete() differently for CN vs MN.
- On the CN, only the CN (or tbd admin user) can call it.
On the MN, both the CN (or admin user) and the _same_ MN can ...
05/01/2012
- 02:55 PM Revision 7161 (metacat): comment out testDelete because it requires acting as the MN
- comment out testSynchronizationFailed because it requires acting as the CN
- 02:49 PM Revision 7160 (metacat): uncomment the MN tests (I bet this was an oversight during local testing)
- 02:48 PM Revision 7159 (metacat): add Session-less archive() method
- 11:59 AM Revision 7158 (metacat): jars with CN/MN.archive() libclient implementations
- 11:14 AM Revision 7157 (metacat): only admin users can call MN/CN.delete(). This is limited to any CN and only the MN that is calling itself
- 10:47 AM Revision 7156 (metacat): update the sysmeta data modified when setting archived=true
- https://redmine.dataone.org/issues/882
- 10:26 AM Revision 7155 (metacat): handle CN.archive() rest call: PUT /archive/{pid}
- https://redmine.dataone.org/issues/2678
- 10:25 AM Revision 7154 (metacat): correct log about 'archive' being called
- 10:15 AM Revision 7153 (metacat): handle 'archive' rest calls
- https://redmine.dataone.org/issues/2678
- 10:15 AM Revision 7152 (metacat): updated d1 jars
- 09:18 AM Revision 7151 (metacat): [optionally] do not archive the xml_documents and xml_nodes to *_revisions when 'deleting' a document. This will effectively guarantee that the document/data cannot be retrieved after delete.
- NOTE: D1 system metadata will persist (for now) so that the ID cannot be reused with the DataONE API but Metacat call...
04/30/2012
- 04:03 PM Revision 7150 (metacat): optionally remove the document/data file from the filesystem completely when 'deleting' it.
- https://redmine.dataone.org/issues/2677
- 03:42 PM Revision 7149 (metacat): newer d1 jars that include shared AuthUtilsmethod for isAuthorized() consistency
- https://redmine.dataone.org/issues/2661
- 03:35 PM Revision 7148 (metacat): implement MN and CN.archive() method -- really just the existing delete() methods.
- https://redmine.dataone.org/issues/2674
https://redmine.dataone.org/issues/2675 - 03:05 PM Revision 7147 (metacat): call MN.delete() for each replica when CN.delete() is called
- https://redmine.dataone.org/issues/2676
- 02:20 PM Revision 7146 (metacat): defer to AuthUtils for flattening out the equivIdent subject list.
- https://redmine.dataone.org/issues/2661
04/27/2012
- 10:24 AM Revision 7145 (metacat): check normal access control rules for getSystemMetadata before deferring to MN replica information that may grant MNs additional access to the SM.
- https://redmine.dataone.org/issues/2656
04/25/2012
- 03:33 PM Revision 7144 (metacat): include Session-less interface methods and updated jars that define them.
04/24/2012
- 10:42 AM Revision 7143 (metacat): use a shared ExecutorService for replicate() calls.
- https://redmine.dataone.org/issues/2623
04/19/2012
- 02:04 PM Revision 7142 (metacat): remove extraneous pid and permission parameters from isAdminAuthorized() method and make public so that it can be called in other locations - namely before our asynchronous replicate() implementation on the MN.
- 01:50 PM Revision 7141 (metacat): check for empty null (missing) node.subjectList. This should probably be a required element in the D1 schema, but it appears not. (ORNL entry was missing subjects in cn-dev environment)
- 11:57 AM Revision 7140 (metacat): just use the e.getMessage() as e.getCause() may be null (seeing NPE when testing via the MN IT tester)
04/18/2012
04/17/2012
- 04:02 PM Revision 7138 (metacat): added 2.0.0 targeted bugs to the release notes and fleshed out other major enhancements in the list
- 03:15 PM Revision 7137 (metacat): no not record EML access rules that use the "denyFirst" permOrder.
- https://redmine.dataone.org/issues/2614
- 09:20 AM Revision 7136 (metacat): needed to initialize the nodeList that stores matching nodes (by subject) -- this was the source of a NPE when we had a matching node subject.
04/16/2012
- 05:38 PM Revision 7135 (metacat): do not create docid-guid mapping unless we are supposed to write access rules for the data to the dbase
- https://redmine.dataone.org/issues/2572
04/13/2012
- 04:40 PM Revision 7134 (metacat): As Ben suggested, don't compare to the node list if there are no replicas listed. This reduces the number of calls to listNodes() on the CN.
- 04:32 PM Revision 7133 (metacat): Minor logging change in throwing ServiceFailure when Hazelcast throws a RuntimeException.
- 04:07 PM Revision 7132 (metacat): Modify getSystemMetadata() to allow nodes that are listed as replicas to access the system metadata. Use the Session.Subject to find a list of nodes from the CN that match the subject, and compare those node ids to the listed replica node ids. Add listNodesBySubject() helper method to do so.
- 07:54 AM Revision 7131 (metacat): release notes for 2.0.0
04/12/2012
04/10/2012
04/09/2012
- 03:18 PM Revision 7128 (metacat): add a parameter for optionally writing EML-embedded access control rules to the Metacat DB.
- https://redmine.dataone.org/issues/2584
https://redmine.dataone.org/issues/2583
04/06/2012
- 04:22 PM Revision 7127 (metacat): added comments and logging about https://redmine.dataone.org/issues/2572
- 03:01 PM Revision 7126 (metacat): generalize the exception handling because our actions are the same no matter what the specific error is during create - we just notify the CN that the replicate call failed
- 02:58 PM Revision 7125 (metacat): catch general Exception that may be thrown during MN.replicate() when creating the object locally. There are a few records that keep slipping off our radar with no explanation as to why they remain in "REQUESTED" status.
- 01:53 PM Revision 7124 (metacat): do not download data at this point
- 01:53 PM Revision 7123 (metacat): catch errors for each localid we are processing so that they do do prevent other ids from having ORE content generated
- 01:52 PM Revision 7122 (metacat): additional debug logging for tracking down MN replication errors
- 01:35 PM Revision 7121 (metacat): only 2.1.0 EML docs for ORE generation right now...
04/05/2012
- 04:28 PM Revision 7120 (metacat): band-aid for CN-CN replication permOrder issue when access control is embedded in EML and the system metadata is replicated before the EML. we just log the inconsistency and allow the insert to succeed
- https://redmine.dataone.org/issues/2583
- 03:05 PM Revision 7119 (metacat): It looks like jk.conf and workers.properties were moved in the scripts dir: update the install docs accordingly.
- 02:56 PM Revision 7118 (metacat): Fixed a minor typo in the tomcat config section.
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