Activity
From 02/28/2014 to 03/29/2014
03/28/2014
03/27/2014
- 04:55 PM Bug #6488 (Feedback): Comply with DataONE MN.query() REST endpoint specifications.
- Committed to Metacat trunk for testing. Should support query URLs with and without leading "?" now.
- 04:52 PM Bug #6488: Comply with DataONE MN.query() REST endpoint specifications.
- The DataONE MN API docs indicate that the {query} parameter should be delimited with a "?". The Metacat MN implementa...
- 04:50 PM Bug #6488 (Closed): Comply with DataONE MN.query() REST endpoint specifications.
- 04:54 PM Revision 8715 (metacat): remove leading '?' in the query parameter for MN.query() implementation. We want it to match CN behavior/expectations and comply with the DataONE specification for the interface. https://projects.ecoinformatics.org/ecoinfo/issues/6488
03/26/2014
- 04:05 PM Revision 8714 (metacat): Use OBOE-SBC ontology for looking up concepts (it contains subclasses of our OBOE Characteristic and Standard superclasses). Restrict annotations to only subclasses that fit the OBOE model. Correct the xpointer and individual naming conventions so they are unique, but express the exact entity/attribute being annotated.
- 03:10 PM Revision 8713 (metacat): remove my api key. oops
- 03:02 PM Revision 8712 (metacat): add comment/pointer to BioPortal annotation service.
- 03:00 PM Revision 8711 (metacat): Include method to look up annotation classes from BioPortal. We still have OBOE-SBC in there, and theyhave the SWEET ontology. The suggestions returned are not perfect, but they can be better than nothing. Ideally, we'd only query a few ontologies so we don't end up using terms from medical ontologies that aren't really appropriate for our domain. https://projects.ecoinformatics.org/ecoinfo/issues/6256
03/24/2014
- 04:17 PM Revision 8710 (metacat): Add xpointer FragmentSelectors to each annotation.
- Split attribute label into tokens to attempt matching to OBOE concepts.
03/23/2014
03/21/2014
- 05:07 PM Revision 8708 (metacat): include characteristic_sm field with SPARQL query
- 01:21 PM Revision 8707 (metacat): include SSLVerify* directives for client certificates and a pointer for getting the DataONE chain files.
03/20/2014
03/19/2014
- 04:02 PM Bug #6473 (Closed): Problem in activating a new generated ldap account
- "^x" is part of the hash string.
It seem user successfully activated his account:
Hi Jing,
I was able to activ... - 01:08 PM Bug #6473: Problem in activating a new generated ldap account
- What is this at the end of the hash?...
- 12:41 PM Bug #6473 (Closed): Problem in activating a new generated ldap account
- Zach Nelson reported there was an issue to activate his account:
hash string Kv9aZuLOdu$tO3 doesn't match our reco... - 01:26 PM Revision 8706 (metacat): Added an explanation of "metacat context" to the Metacat Themes docs based on questions asked by an actual user following our instructions in the docs.
03/18/2014
- 12:18 PM Revision 8705 (metacat): Edited the docs to incude more details about creating a custom theme
03/14/2014
- 03:35 PM Bug #6466: Groups Assignment after making some accounts aliases
- I modified the code so metacat wouldn't change the group assignment after the dn was aliased.
So it will work as ... - 01:31 PM Bug #6466 (Closed): Groups Assignment after making some accounts aliases
- Background: the merge of our ldap trees, the groups information wouldn't be touched.
Before the merge, the uid=ben... - 03:33 PM Revision 8704 (metacat): Remove the code to lookup alias dn in the getGroups method.
- 01:16 PM Revision 8703 (metacat): Rather than directly to modify the env, we use context.addToEnv.
- This fixed a bug in non-tls env, the alias log-in doesn't work.
- 10:59 AM Revision 8702 (metacat): first pass at generating annotations from EML attribute information. uses the OpenAnnotation model that the metacat-index tests assume which allows us to populate dynamic index fields for the annotation class[es]. There is still much to be done with finding appropriate concepts for each attribute. https://projects.ecoinformatics.org/ecoinfo/issues/6256
- 10:55 AM Revision 8701 (metacat): switch to index standard since it is more likely we will be able to determine this from our existing EML attribute information. https://projects.ecoinformatics.org/ecoinfo/issues/6253
03/12/2014
- 12:13 PM Task #6433: Test Metacat on tomcat7
- Update: after Aaron downgraded its tomcat to 6, morpho 10.1 still has the frozen issue.
03/06/2014
03/05/2014
- 11:46 AM Revision 8699 (metacat): Add comments to bash script to explain its function and dependencies
- 11:34 AM Feature #6445 (New): Alter replicaPolicies.sh so that the script will iterate over pages of objects instead of updating the count in the code manually
- 11:30 AM Revision 8698 (metacat): Added a bash script to call /replicaPolicies/{pid} via the DataONE API for all objects in a MN or a list of ids.
03/04/2014
- 12:09 PM Story #6440 (Closed): Keep DOI registrations current and resolvable
- We have used a few different DOI registration approaches on the KNB:
* bulk load of all historical content (metadata... - 10:23 AM Revision 8697 (metacat): Add the test class for the pisco account.
- 10:22 AM Revision 8696 (metacat): Remove the test method for the pisco account since it maybe fails because of the fire wall issue.
- 09:48 AM Revision 8695 (metacat): Add the login test of the pisco account.
- 09:47 AM Revision 8694 (metacat): Add the pisco account.
03/03/2014
- 04:33 PM Revision 8693 (metacat): Do a more thorough check that the characteristic annotation was successfully indexed as expected (semtools)
- 03:56 PM Revision 8692 (metacat): switch to the OpenAnnotation (OA) model for annotating datapackages with measurements/characteristics (semtools)
- 03:55 PM Revision 8691 (metacat): switch to the OpenAnnotation (OA) model for annotating datapackages with measurements/characteristics (semtools)
- 03:54 PM Revision 8690 (metacat): switch to the OpenAnnotation (OA) model for annotating datapackages with measurements/characteristics (semtools)
- 03:41 PM Revision 8689 (metacat): support content from all serverLocations when summarizing entity info (semtools)
- 09:30 AM Revision 8688 (metacat): bump the poms to 2.4.2
- 07:03 AM Story #6437: Upgrade to SOLR 4 or 5
- Assigning to Peter for now -- seems he will be involved with SOLR for stats service and has already experimented with...
- 06:52 AM Story #6437 (New): Upgrade to SOLR 4 or 5
- We'd like to make use of new key features in SOLR 4:
* spatial indexing/filters
* geohash (for heatmaps/displaying ...
03/02/2014
03/01/2014
02/28/2014
- 04:39 PM Revision 8680 (metacat): Add a pisco test account.
- 04:30 PM Bug #6424 (Closed): Obsoleted objects not marked in index
- Now re-indexing the obsoleted revision[s] of any new objects that are added with update commands. Note that we do not...
- 04:08 PM Bug #6435 (Closed): Solr queries with certain URL-encoded characters are decoded twice
- Added special case for "+" so that when we use the SOLRJ parser it does not encode the intended "+" into a space.
- 02:45 PM Bug #6435 (Closed): Solr queries with certain URL-encoded characters are decoded twice
- The one character I know is a problem is + (%2B). When %2B is sent in a Solr query, Metacat seems to decode it twice ...
- 04:06 PM Revision 8678 (metacat): allow "+" in solr query syntax. https://projects.ecoinformatics.org/ecoinfo/issues/6435
- 01:53 PM Revision 8677 (metacat): Add a comment to warn the users not to change the password file path to a production one since it will be deleted.
- 01:11 PM Revision 8675 (metacat): clear test password file so subsequent runs will not fail -- tests assume blank file to begin with.
- 10:54 AM Task #6433 (Closed): Test Metacat on tomcat7
- Aaron from UW installed a Metacat instance on tomcat7 (Ubuntu 12). But a user can't log in when a Morpho connected it...
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