Activity
From 03/05/2014 to 04/03/2014
04/03/2014
04/02/2014
- 03:40 PM Revision 8725 (metacat): add "test" for generating annotations based on the entity/attribute details of a datapackage. This iterates through all current EML revisions and either updates or creates annotations based on what it finds. It does add content to your metacat deployment (RDF files) but it can be safely re-run when each time we change our annotation algorithm.
- 03:36 PM Revision 8724 (metacat): check for null entities and/or attributes (typically when otherEntity is being used in EML).
- 03:35 PM Revision 8723 (metacat): remove extra space in log message
- 03:35 PM Revision 8722 (metacat): handle null Boolean in SM.archived field
03/31/2014
- 04:04 PM Revision 8721 (metacat): include sample data package for generating annotations. This is the classic Datos Meteorologicos set, but with Matthew Jones as the creator so that we can look up his ORCID in their sandbox environment. https://projects.ecoinformatics.org/ecoinfo/issues/6267
- 03:25 PM Revision 8720 (metacat): use Matthew Jones for test creator since he has an ORCID in their staging environment.
- 12:31 PM Revision 8719 (metacat): augment annotation indexing test/sample to include orcid annotation. https://projects.ecoinformatics.org/ecoinfo/issues/6267
- https://projects.ecoinformatics.org/ecoinfo/issues/6423
- 11:11 AM Revision 8718 (metacat): attribute the datapackage to the creator (using orcid if we can find it). https://projects.ecoinformatics.org/ecoinfo/issues/6267
- https://projects.ecoinformatics.org/ecoinfo/issues/6423
- 10:31 AM Revision 8717 (metacat): add test for BioPortal annotator service.
03/28/2014
03/27/2014
- 04:55 PM Bug #6488 (Feedback): Comply with DataONE MN.query() REST endpoint specifications.
- Committed to Metacat trunk for testing. Should support query URLs with and without leading "?" now.
- 04:52 PM Bug #6488: Comply with DataONE MN.query() REST endpoint specifications.
- The DataONE MN API docs indicate that the {query} parameter should be delimited with a "?". The Metacat MN implementa...
- 04:50 PM Bug #6488 (Closed): Comply with DataONE MN.query() REST endpoint specifications.
- 04:54 PM Revision 8715 (metacat): remove leading '?' in the query parameter for MN.query() implementation. We want it to match CN behavior/expectations and comply with the DataONE specification for the interface. https://projects.ecoinformatics.org/ecoinfo/issues/6488
03/26/2014
- 04:05 PM Revision 8714 (metacat): Use OBOE-SBC ontology for looking up concepts (it contains subclasses of our OBOE Characteristic and Standard superclasses). Restrict annotations to only subclasses that fit the OBOE model. Correct the xpointer and individual naming conventions so they are unique, but express the exact entity/attribute being annotated.
- 03:10 PM Revision 8713 (metacat): remove my api key. oops
- 03:02 PM Revision 8712 (metacat): add comment/pointer to BioPortal annotation service.
- 03:00 PM Revision 8711 (metacat): Include method to look up annotation classes from BioPortal. We still have OBOE-SBC in there, and theyhave the SWEET ontology. The suggestions returned are not perfect, but they can be better than nothing. Ideally, we'd only query a few ontologies so we don't end up using terms from medical ontologies that aren't really appropriate for our domain. https://projects.ecoinformatics.org/ecoinfo/issues/6256
03/24/2014
- 04:17 PM Revision 8710 (metacat): Add xpointer FragmentSelectors to each annotation.
- Split attribute label into tokens to attempt matching to OBOE concepts.
03/23/2014
03/21/2014
- 05:07 PM Revision 8708 (metacat): include characteristic_sm field with SPARQL query
- 01:21 PM Revision 8707 (metacat): include SSLVerify* directives for client certificates and a pointer for getting the DataONE chain files.
03/20/2014
03/19/2014
- 04:02 PM Bug #6473 (Closed): Problem in activating a new generated ldap account
- "^x" is part of the hash string.
It seem user successfully activated his account:
Hi Jing,
I was able to activ... - 01:08 PM Bug #6473: Problem in activating a new generated ldap account
- What is this at the end of the hash?...
- 12:41 PM Bug #6473 (Closed): Problem in activating a new generated ldap account
- Zach Nelson reported there was an issue to activate his account:
hash string Kv9aZuLOdu$tO3 doesn't match our reco... - 01:26 PM Revision 8706 (metacat): Added an explanation of "metacat context" to the Metacat Themes docs based on questions asked by an actual user following our instructions in the docs.
03/18/2014
- 12:18 PM Revision 8705 (metacat): Edited the docs to incude more details about creating a custom theme
03/14/2014
- 03:35 PM Bug #6466: Groups Assignment after making some accounts aliases
- I modified the code so metacat wouldn't change the group assignment after the dn was aliased.
So it will work as ... - 01:31 PM Bug #6466 (Closed): Groups Assignment after making some accounts aliases
- Background: the merge of our ldap trees, the groups information wouldn't be touched.
Before the merge, the uid=ben... - 03:33 PM Revision 8704 (metacat): Remove the code to lookup alias dn in the getGroups method.
- 01:16 PM Revision 8703 (metacat): Rather than directly to modify the env, we use context.addToEnv.
- This fixed a bug in non-tls env, the alias log-in doesn't work.
- 10:59 AM Revision 8702 (metacat): first pass at generating annotations from EML attribute information. uses the OpenAnnotation model that the metacat-index tests assume which allows us to populate dynamic index fields for the annotation class[es]. There is still much to be done with finding appropriate concepts for each attribute. https://projects.ecoinformatics.org/ecoinfo/issues/6256
- 10:55 AM Revision 8701 (metacat): switch to index standard since it is more likely we will be able to determine this from our existing EML attribute information. https://projects.ecoinformatics.org/ecoinfo/issues/6253
03/12/2014
- 12:13 PM Task #6433: Test Metacat on tomcat7
- Update: after Aaron downgraded its tomcat to 6, morpho 10.1 still has the frozen issue.
03/06/2014
03/05/2014
- 11:46 AM Revision 8699 (metacat): Add comments to bash script to explain its function and dependencies
- 11:34 AM Feature #6445 (New): Alter replicaPolicies.sh so that the script will iterate over pages of objects instead of updating the count in the code manually
- 11:30 AM Revision 8698 (metacat): Added a bash script to call /replicaPolicies/{pid} via the DataONE API for all objects in a MN or a list of ids.
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