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From 04/27/2014 to 05/26/2014

05/23/2014

05:29 PM Revision 8797 (metacat): draft of semantic model documentation
ben leinfelder
03:08 PM Revision 8796 (metacat): Change geohash type to "string" (was "text") so that no Solr analysis or tokenizing happens during indexing.
Peter Slaughter

05/22/2014

01:59 PM Revision 8795 (metacat): take advantage of the ezidclient for multi-threaded/asynchronous DOI registration. This will be most useful for doing large batch updates and not so much for the one-at-a-time publish actions but works in either context. https://projects.ecoinformatics.org/ecoinfo/issues/6440
ben leinfelder

05/21/2014

06:24 PM Revision 8794 (metacat): use a member instance of ezid service that only logs in every 24 hours (or other time TBD) instead of every time there is an interaction with the service. Saves us many calls when doing batch updates to ezid but keeps us from trying to use expired sessions. Motivated by https://projects.ecoinformatics.org/ecoinfo/issues/6440
ben leinfelder
02:59 PM Revision 8793 (metacat): Fixed an error in the ORE model diagrams
Lauren Walker

05/20/2014

04:11 PM Revision 8792 (metacat): prevent js scriptlets from running when we return error messages to the client by escaping any potentially harmful xml blocks. https://projects.ecoinformatics.org/ecoinfo/issues/6224
ben leinfelder
04:09 PM Revision 8791 (metacat): allow updates to all doi: prefixes - realized we are already restricting to specific replica servers when updating these. worst case is we try to update a registration for which we are not the owner. https://projects.ecoinformatics.org/ecoinfo/issues/6440
ben leinfelder
04:08 PM Revision 8790 (metacat): show the SM and ORE generation buttons even if they have not registered/configured dataone. many potential MNs want to see their generated SM _before_ registering (and we want them to too!).
ben leinfelder
10:40 AM Revision 8789 (metacat): restrict DOI updates to DOIs that match our server shoulder -- may consider opening this up to any "doi:" prefix if this is too restrictive. https://projects.ecoinformatics.org/ecoinfo/issues/6440
ben leinfelder

05/19/2014

02:21 PM Revision 8788 (metacat): use separate surName and givenNames to lookup ORCIDs.
ben leinfelder
01:17 PM Revision 8787 (metacat): Changed errors in the ORE model expansion metacat documentation diagrams
Lauren Walker

05/16/2014

03:13 PM Revision 8786 (metacat): Describe the primary data resource in the derived resource RDF
Lauren Walker
10:03 AM Revision 8785 (metacat): Create a derived data and metadata in the OrePackageTest
Lauren Walker

05/15/2014

03:17 PM Revision 8784 (metacat): all full-text queries for ORCID, but it isn't that great because we might have a"PISCO" creator that shows us in may different orcid profiles...false matches.
ben leinfelder
11:55 AM Revision 8783 (metacat): correct glaring erros -- still needs to be honed, but at least it runs without NPE and Jena/foresite errors
ben leinfelder
11:29 AM Revision 8782 (metacat): stub for testing ORE augmentation - this generates an ORE, adds a "wasDerivedFrom" triple and saves to Metacat MN for indexing. https://projects.ecoinformatics.org/ecoinfo/issues/6548
ben leinfelder
10:27 AM Revision 8781 (metacat): include ORE formatId as handled by the RDF subprocessor and index prov:wasDerivedFrom field where it exists in the RDF model. https://projects.ecoinformatics.org/ecoinfo/issues/6548
ben leinfelder
09:34 AM Revision 8780 (metacat): expand the sparql queries to include dcterms:identifier
ben leinfelder

05/14/2014

02:09 PM Revision 8779 (metacat): Text changes to ORE docs
Lauren Walker
01:22 PM Revision 8778 (metacat): Add documentation for the ORE model expansion for derived data
Lauren Walker
12:04 PM Revision 8777 (metacat): use HttpClient to query orcid so I can easily set headers and such -- getting 503s from their production server when I test on dev.nceas...odd
ben leinfelder
11:43 AM Revision 8776 (metacat): adjust tests for production service -- more "real" information shows additional return values from the query.
ben leinfelder
09:18 AM Revision 8775 (metacat): switch to the production ORCID server for looking up orcid matches for our creators.
add test to summarize how many creator matches we can actually find. https://projects.ecoinformatics.org/ecoinfo/issu... ben leinfelder

05/13/2014

03:36 PM Revision 8774 (metacat): use a non-public rightsHolder for both EML and Annotation test documents now that the RDF subprocessor checks each annotation to see that it came from a user that as write permission for the object being annotated.
ben leinfelder
03:34 PM Revision 8773 (metacat): test for update using the updated EML file, not the original. Also add the SM to the shared map so that the indexing process can consult SM.accessPolicy when indexing annotations that assert things about those test documents.
ben leinfelder
03:32 PM Revision 8772 (metacat): ignore the metacat/solr comparator tests - they are one-offs.
ben leinfelder
03:31 PM Revision 8771 (metacat): change the hazelcast group name to be the default "metacat" instance so that the metacat-index tests pass without additional local configuration, at least when running a default metacat deployment.
ben leinfelder

05/12/2014

11:31 AM Revision 8770 (metacat): do not set archived=false for all CN.create calls. The CN will use create() even harvesting content that is new to it and needs to handle already-archived content. https://projects.ecoinformatics.org/ecoinfo/issues/6475
ben leinfelder

05/09/2014

01:48 PM Revision 8769 (metacat): cache the imported models to avoid timeouts from remote hosts (or being locked out for too many requests in a given time period).
ben leinfelder

05/08/2014

04:25 PM Revision 8768 (metacat): process all the returned annotation suggestions until we find one that is appropriately located in the subclass hierarchy for the given superclass.
ben leinfelder
04:23 PM Revision 8767 (metacat): use in-memory TDB dataset for querying annotations for indexing -- this comes with the same reasoning capabilities as the directory-based one, but has the benefit of not filling the directory with triples that will not be used again. prepping for d1 AHM
ben leinfelder

05/07/2014

11:16 PM Revision 8766 (metacat): pass around the object file path rather than the data stream so that multiple subprocessors can index the same object and not consume the stream before it gets to the next one. In preparation for extending the assertions stored in OREs. https://projects.ecoinformatics.org/ecoinfo/issues/6548
ben leinfelder
11:12 PM Revision 8765 (metacat): when indexing annotations directly, just use an in-memory triple store rather than TDB since we remove each graph as it is processed (and my TDB instance would get into the multi-GB range with a few runs, even if I removed the old models)
ben leinfelder

05/05/2014

05:17 PM Revision 8764 (metacat): redirect "short form" metacat read URIs to the the new Metacat UI using the configured UI context. This translates the docid -> pid to use the correct identifier for the correct service. https://projects.ecoinformatics.org/ecoinfo/issues/6546
ben leinfelder

05/02/2014

04:39 PM Revision 8763 (metacat): simplify lookup for classes and orcid. remove the "random" annotation code branches -- just too confusing to look at those bogus classes especially now that we have "real" generated annotations.
ben leinfelder

04/30/2014

03:47 PM Revision 8762 (metacat): add 'test' for indexing annotations without actually storing the RDF of the generated annotation.
ben leinfelder
03:46 PM Revision 8761 (metacat): only allow multiple values for multi-valued fields....
ben leinfelder
01:02 PM Revision 8760 (metacat): Add admin service to update DOI registrations by specifying a list of formatIds or DOIs, or update all.
Lauren Walker

04/29/2014

05:21 PM Revision 8759 (metacat): use new method to override the CN URL when constructing a CNode instance. see https://redmine.dataone.org/issues/5142
ben leinfelder
04:55 PM Revision 8758 (metacat): use newer httpclient library so that Jena's dependency is met - this goes all the way back to d1_common/libclient needing to pull in the newer library.
ben leinfelder
04:54 PM Revision 8757 (metacat): first pass at direct EML->semantic index method. Still produces an RDF model, but does not persist it in Metacat, only in the triplestore. Allows us to re-run without adding stale RDF to the MN store.
ben leinfelder
04:52 PM Revision 8756 (metacat): allow multivalued fields to be indexed using the "fields" pass through.
ben leinfelder
04:47 PM Revision 8755 (metacat): Remove the attribute disable from the update button if it has been submitted.
Jing Tao
03:31 PM Revision 8754 (metacat): The image which has the default values.
Jing Tao
03:13 PM Revision 8753 (metacat): Add a new screen shot which contains the cn url.
Jing Tao

04/28/2014

04:54 PM Revision 8752 (metacat): Localized the file which doesn't have the bean for dataUrl.
Jing Tao
03:38 PM Revision 8751 (metacat): Add the cn url.
Jing Tao
03:37 PM Revision 8750 (metacat): Add the text field for the cn url.
Jing Tao
03:30 PM Revision 8749 (metacat): Store the cn url in the backup.
Jing Tao
 

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