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# Date Author Comment
5544 09/08/2010 02:32 PM ben leinfelder

removing unused search pages (leftover from 'default' skin copy)

5543 09/07/2010 04:30 PM ben leinfelder

separate the class and the ontology from the the URI for easier reading. putting them in a table also helps

5542 09/07/2010 03:49 PM ben leinfelder

include links from annotation to the data package metadata

5541 09/07/2010 03:06 PM ben leinfelder

include stylesheet to display annotation document on it's own (in addition to within a resultset)

5540 09/07/2010 02:40 PM ben leinfelder

include the column name that the measurement is mapped to

5539 09/07/2010 11:39 AM ben leinfelder

list the currently registered ontologies (in case someone wants to unregister them?)

5538 09/07/2010 10:06 AM ben leinfelder

rearrange the ontology registration page - bioportal-hosted ontologies come first

5537 09/06/2010 04:50 PM ben leinfelder

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

5536 09/03/2010 04:53 PM ben leinfelder

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.

5535 09/01/2010 02:19 PM ben leinfelder

include a page for [un]registering ontologies with the ontology manager in the semtools plugin

5533 08/30/2010 04:34 PM ben leinfelder

basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement

5509 08/23/2010 12:37 PM ben leinfelder

include bioportal widgets, at least for an example.
oboe-sbc and oboe are both registered as tests.

5504 08/19/2010 04:55 PM ben leinfelder

map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.

5501 08/13/2010 01:50 PM Jing Tao

Merge 1.9.3 branch to the trunk.

5492 08/12/2010 11:31 AM ben leinfelder

merge 1.9.3 change to include karxml 2.1 documents in search/rendering

5476 08/04/2010 12:10 PM ben leinfelder

remove "indus" urls

5438 07/20/2010 03:56 PM berkley

adding dataone to the login org choice for the dev skin

5385 06/11/2010 05:00 PM ben leinfelder

starting point for semtools skin. augmenting default skin with Annotation documents.
not yet semantically enhanced search capabilities, but you can see a listing of both EML and Annotations on the server.

5372 05/25/2010 05:15 PM Jing Tao

Commit the change for Madhusudan Gujral from java.net.URL url = new java.net.URL;
to java.net.URL url = new java.net.URL;

5367 05/18/2010 04:27 PM Jing Tao

Fixed bug the download link didn't work.

5361 05/17/2010 03:36 PM Jing Tao

Add a mapping between kar xml namespace and karxml.xsl.

5360 05/17/2010 03:34 PM Jing Tao

Add a style sheet to transform kar xml document.

5357 05/14/2010 05:57 PM Jing Tao

Change the search query according to the karxml change.

5354 05/13/2010 04:28 PM Jing Tao

Change the return type from kar to the namespace.

5311 04/14/2010 11:31 AM daigle

Merge 1.9.2 changes back into the trunk

5202 01/27/2010 09:51 AM daigle

Populate esa home links with skin property value

5187 01/07/2010 01:37 PM daigle

change dropdown select event to work on IE.

5185 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5184 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5183 01/06/2010 02:03 PM daigle

Remove commas from the end of lists because they break IE

5182 01/06/2010 11:41 AM ben leinfelder

remove the "optional" tip since it is not currently optional

5178 01/05/2010 04:07 PM ben leinfelder

use @class attribute for path queries rather than @name

5164 12/18/2009 01:22 PM daigle

add parc-moderators to config.username

5163 12/10/2009 12:59 PM Chris Jones

I've added the PARC and PISCO organizations to the delete and confirm form templates for the data registry application.

5155 12/08/2009 09:23 AM daigle

remove registry.config.username value

5147 12/02/2009 07:22 AM Chris Jones

I've removed the value for the PARC registry.config.site property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.

5146 12/01/2009 10:15 AM daigle

hard code parc home url

5145 12/01/2009 10:03 AM daigle

Redirect data.palmyraresearch.org to parc skin

5144 11/30/2009 11:08 AM Chris Jones

I've added the PARC organization to the login form template.

5143 11/30/2009 11:02 AM Chris Jones

I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.

5142 11/30/2009 09:58 AM Chris Jones

This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.

5136 11/23/2009 10:05 AM Chris Jones

I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.

5135 11/23/2009 09:49 AM Chris Jones

I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.

5134 11/23/2009 09:47 AM Chris Jones

I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.

5133 11/23/2009 09:44 AM Chris Jones

I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.

5132 11/23/2009 09:41 AM Chris Jones

These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.

5131 11/23/2009 09:39 AM Chris Jones

I've added the PARC CSS file, which uses colors and images found at the PARC website.

5130 11/23/2009 09:37 AM Chris Jones

These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the http://www.palmyraresearch.org website layout (e.g. some navigation links have been removed).

5129 11/23/2009 09:34 AM Chris Jones

Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.

5128 11/23/2009 09:32 AM Chris Jones

I'm adding the parc.cfg configuration file, which is effectively a copy of the nceas.cfg file.

5126 11/23/2009 09:29 AM Chris Jones

This is the PARC XML configuration file. I've removed the EML beta 4-6 doctype identifiers since this skin will only deal with EML 2.1.0 documents.

5125 11/23/2009 09:26 AM Chris Jones

I'm adding the Metacat metadata properties file for the PARC installation.

5124 11/23/2009 09:25 AM Chris Jones

I'm adding the properties file configured for the Palmyra Atoll Research Consortium's installation.

5123 11/23/2009 09:15 AM Chris Jones

I'm adding in the parc directory, which will contain the skin for the Palmyra Atoll Research Consortium.

5121 11/13/2009 04:03 PM daigle

Start to fix I.E. gui issues

5119 11/10/2009 01:31 PM ben leinfelder

check for IE6 and show warning if they are using it

5118 11/09/2009 02:43 PM daigle

Remove seconds and minutes values from workflow scheduler and add weeks and months.

5117 11/09/2009 02:42 PM daigle

Include kar id in delete url parameters so resultset will render after delete

5106 11/06/2009 01:05 PM ben leinfelder

add id attributes for form elements (in case IE6 needed them) but it appears they are not required

5105 11/05/2009 11:34 AM ben leinfelder

add the "value" attribute for metadata tag downloads

5102 11/03/2009 06:26 PM ben leinfelder

add code block (commented out) to use in case "?column?" headers become an issue.

5101 11/03/2009 03:44 PM ben leinfelder

handle repeating "?column?" headers - somewhat naively, but consistent

5099 11/03/2009 10:31 AM daigle

Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.

5088 10/16/2009 11:08 AM daigle

Create workflow access pages

5087 10/15/2009 03:55 PM ben leinfelder

correct the metadata matrix for "transposed" data download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4452

5084 10/15/2009 02:51 PM ben leinfelder

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

5083 10/15/2009 10:42 AM ben leinfelder

include at least one metadata field and then include any that are additional (_2, _3....etc)
bug #4452

5082 10/13/2009 03:01 PM daigle

Add ability for doc owner to add user access to workflows.

5081 10/06/2009 01:58 PM ben leinfelder

allow user to specify the data columns included for the transpose data set (score, response, response file).
decided in today's CC

5080 10/06/2009 10:59 AM daigle

Only allow workflows with kars that have user write permissions to be scheduled.

5075 10/06/2009 10:53 AM daigle

submit a form into a div via ajax using either form id or form object

5074 10/06/2009 10:52 AM daigle

move worflow page sections from common into the sanparks skin files

5071 10/02/2009 01:07 PM daigle

Change sanparks skin to log in with browser session instead of metacat client session so session can be validated on other pages.

5068 10/01/2009 03:04 PM ben leinfelder

choices for metadata tags to include:
1-10, increments of 1; 11-50 increments of 10

5067 10/01/2009 01:28 PM ben leinfelder

add "responsefile" column as data in the transpose
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

5065 09/28/2009 10:09 AM ben leinfelder

include input selection for the number of metadata fields to download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

5064 09/28/2009 08:56 AM ben leinfelder

include more than just the first metadata field for questions
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

5063 09/25/2009 09:36 AM ben leinfelder

include download link instead of an ecogrid pointer
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

5062 09/24/2009 04:30 PM ben leinfelder

include ecogrid link to the external file in downloaded data

5061 09/21/2009 12:41 PM ben leinfelder

do not search across items when simply "browsing all"

5060 09/21/2009 12:38 PM ben leinfelder

comment out a debugging alert() call

5059 09/18/2009 10:09 PM ben leinfelder

use keyword field for both assessments and assessment items
remove unused query options that were in place for the mock up UI
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387

5058 09/18/2009 04:53 PM ben leinfelder

search across items as well as assessments
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387
note: you can switch this feature off using the checkbox provided in the search form. the search can be slow otherwise

5057 09/04/2009 03:12 PM daigle

Add session validation to metacat tpc and workflow scheduler. Fix sanparks skin session management so it always uses the logged in session id.

5044 08/27/2009 12:04 PM daigle

change name of workflowjobid parameter to be workflowjobname which is more accurate

5037 08/24/2009 02:44 PM daigle

point workflow requests to the new workflow servlet.

5031 08/24/2009 02:37 PM daigle

Change location of PropertyService to properties directory

5027 08/14/2009 02:26 PM daigle

Change MetaCatVersion to MetacatVersion

5019 08/07/2009 11:36 AM ben leinfelder

fixes for first installation

5013 07/31/2009 04:47 PM daigle

Add the ability to delete a scheduled workflow (move status to deleted in database)

5012 07/30/2009 04:58 PM daigle

Added end time to workflow scheduler.

5011 07/30/2009 01:27 PM daigle

Propagate the kar id throughout the configuration screens.

5005 07/30/2009 10:20 AM daigle

Input date formatting changes

5000 07/28/2009 10:01 AM ben leinfelder

override the 10px margin that was added to the EML stylesheet that we are including.

4998 07/27/2009 02:42 PM ben leinfelder

-handle new(?) XPath for the question prompt and include in the CSV download
-sort the multiple choice options

4997 07/27/2009 12:59 PM ben leinfelder

fix name="...." attribute that was causing problems in IE (it was a typo, but not caught in firefox)
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4262

4989 07/21/2009 01:12 AM ben leinfelder

sort workflow run results by:
-date executed (desc)
-tpc name (asc)

4988 07/21/2009 12:49 AM ben leinfelder

sort workflow results by:
-date (desc)
-tpc name (asc)

4987 07/20/2009 06:44 AM daigle

Add debug statement

4984 07/19/2009 11:18 PM daigle

Created new AuthStub class to always authenticate.