Metacat

Redirect data.palmyraresearch.org to parc skin

I've added the PARC organization to the login form template.

I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.

This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.

added parc to list of available skins.

I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.

I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.

I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.

I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.

These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.

I've added the PARC CSS file, which uses colors and images found at the PARC website.

These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the http://www.palmyraresearch.org website layout (e.g. some navigation links have been removed).

Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.

I'm adding the parc.cfg configuration file, which is effectively a copy of the nceas.cfg file.

This is the PARC XML configuration file. I've removed the EML beta 4-6 doctype identifiers since this skin will only deal with EML 2.1.0 documents.

I'm adding the Metacat metadata properties file for the PARC installation.

I'm adding the properties file configured for the Palmyra Atoll Research Consortium's installation.

I'm adding in the parc directory, which will contain the skin for the Palmyra Atoll Research Consortium.

special handling for RDF namespace documents (semtools project)

Start to fix I.E. gui issues

check for IE6 and show warning if they are using it

Remove seconds and minutes values from workflow scheduler and add weeks and months.

Include kar id in delete url parameters so resultset will render after delete

add id attributes for form elements (in case IE6 needed them) but it appears they are not required

add the "value" attribute for metadata tag downloads

add code block (commented out) to use in case "?column?" headers become an issue.

handle repeating "?column?" headers - somewhat naively, but consistent

Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.

Create workflow access pages

correct the metadata matrix for "transposed" data download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4452

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

include at least one metadata field and then include any that are additional (_2, _3....etc)
bug #4452

Add ability for doc owner to add user access to workflows.

allow user to specify the data columns included for the transpose data set (score, response, response file).
decided in today's CC

Only allow workflows with kars that have user write permissions to be scheduled.

Add authorization check before scheduling a job in the workflow scheduler

submit a form into a div via ajax using either form id or form object

move worflow page sections from common into the sanparks skin files

Change sanparks skin to log in with browser session instead of metacat client session so session can be validated on other pages.

choices for metadata tags to include:
1-10, increments of 1; 11-50 increments of 10

add "responsefile" column as data in the transpose
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

include input selection for the number of metadata fields to download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

include more than just the first metadata field for questions
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

include download link instead of an ecogrid pointer
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

include ecogrid link to the external file in downloaded data

do not search across items when simply "browsing all"

comment out a debugging alert() call

use keyword field for both assessments and assessment items
remove unused query options that were in place for the mock up UI
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387

search across items as well as assessments
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387
note: you can switch this feature off using the checkbox provided in the search form. the search can be slow otherwise

Add session validation to metacat tpc and workflow scheduler. Fix sanparks skin session management so it always uses the logged in session id.

change to DM that preserve the order of the attributes being selected

include latest datamanager changes - notably the performance enhancement regarding attributes and table creation

do not use the jdk logging - this was being used with the datamanager for some reason (but not the rest of metacat).
we use log4j...

Add code from Bill Baker, which uses certficate to login metacat.

change name of workflowjobid parameter to be workflowjobname which is more accurate

Add session Validation action and session timeout functionality.

remove base dir definitions from configuration

point workflow requests to the new workflow servlet.

Move workflow scheduler lib files into their own directory

Remove metacat web servlet that was added last week

Change location of PropertyService to properties directory

Persist skin properties across installations

Change MetaCatVersion to MetacatVersion

includes ability to select null attributes for unions

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Add documentation files to the 'docs/dev/oaipmh' directory. * Delete two obsolete files. * Modify class description comment in MetacatRecordFactory.java

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair. * Terminate harvest if login failed. * Add runHarvester.sh shell script

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair.

fixes for first installation

include first as an available skin

Fix references to db classes that were moved and refactoring missed.

Create database and shared directories for database management code and shared code respectively.

Create replication directory. Move replication code there. Use log4j for replication logging (rollingfileappender). Beef up replication logging and error control.

Add the ability to delete a scheduled workflow (move status to deleted in database)

Added end time to workflow scheduler.

Propagate the kar id throughout the configuration screens.

Populate admin login user dropdown with configured admins

Input date formatting changes

Use context url instead of server IP. Server IP breaks if the server does not have an externally facing IP (behind a proxy server)

include datamanager configuration in the /admin utility (for FIRST project...and others down the road)

override the 10px margin that was added to the EML stylesheet that we are including.

Implement fix for Bug #4245: Harvester command line scripts don't execute.

-handle new(?) XPath for the question prompt and include in the CSV download
-sort the multiple choice options

fix name="...." attribute that was causing problems in IE (it was a typo, but not caught in firefox)
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4262

sort workflow run results by:
-date executed (desc)
-tpc name (asc)

sort workflow results by:
-date (desc)
-tpc name (asc)

Add debug statement

replace // with #

Created new AuthStub class to always authenticate.

Adjust width of workflow resultset column so download link shows up

Beef up search. Change pdf report element name.

Add upgrade scripts for 1.9.2 (scheduler tables)

Beef up comments

Added so axis call to workflow engine will work (attachments support)

Updates primarily for final workflow and run xml metadata design

remove duplicate jar - same version as existing one

axis-ant (1.3) support in metacat

moved axis-ant.jar to lsid_lib

axis-ant (1.3) support in metacat (may need additional jars)