Project

General

Profile

Statistics
| Revision:

# Date Author Comment
5540 09/07/2010 02:40 PM ben leinfelder

include the column name that the measurement is mapped to

5539 09/07/2010 11:39 AM ben leinfelder

list the currently registered ontologies (in case someone wants to unregister them?)

5538 09/07/2010 10:06 AM ben leinfelder

rearrange the ontology registration page - bioportal-hosted ontologies come first

5537 09/06/2010 04:50 PM ben leinfelder

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

5536 09/03/2010 04:53 PM ben leinfelder

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.

5535 09/01/2010 02:19 PM ben leinfelder

include a page for [un]registering ontologies with the ontology manager in the semtools plugin

5534 08/31/2010 02:29 PM ben leinfelder

minor upgrade to commons-logging (1.0.3->1.0.4)

5533 08/30/2010 04:34 PM ben leinfelder

basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement

5532 08/27/2010 09:21 PM ben leinfelder

use same xercesImpl as geoserver (2.4)

5531 08/27/2010 07:28 PM ben leinfelder

upgrade to xalan 2.7 from 2.5.1 (geoserver was using 2.7 already)

5530 08/27/2010 02:59 PM ben leinfelder

upgrade commons-collections (3.2) and commons-lang (2.5) - avoid conflicts with semtools plugin that requires these newer jars.

5529 08/27/2010 02:29 PM ben leinfelder

upgrade the log4j jar - reduces the duplicate jars to wade though in the build process

5528 08/27/2010 02:24 PM ben leinfelder

don't include the semtools plugin in the default config

5527 08/27/2010 02:20 PM ben leinfelder

remove chad's local changes (server, db, etc) - but preserve the D1 config values that were added

5526 08/27/2010 12:27 PM berkley

new values for mets namespace

5523 08/27/2010 11:09 AM berkley

moved the dataone types to the metacat.properties file

5520 08/27/2010 08:25 AM berkley

removing old service api jar

5519 08/27/2010 08:24 AM berkley

new dataone jars

5518 08/26/2010 05:10 PM ben leinfelder

include MetacatHandlerPlugin interface so that other projects [semtools] can extend the actions handled by Metcat without editing the codebase directly. The SemtoolsPlugin is the prototype for this and can be registered using the Metacat admin interface. Note that the plugin implementation class and supporting jars must be included in the webapp in order for the request to be handled correctly (the semtools build is injecting these as part of it's build process).

5517 08/26/2010 02:43 PM ben leinfelder

include 1.9.3 upgrade script in trunk

5514 08/25/2010 02:43 PM ben leinfelder

use localhost as defaults for the properties

5509 08/23/2010 12:37 PM ben leinfelder

include bioportal widgets, at least for an example.
oboe-sbc and oboe are both registered as tests.

5504 08/19/2010 04:55 PM ben leinfelder

map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.

5501 08/13/2010 01:50 PM Jing Tao

Merge 1.9.3 branch to the trunk.

5492 08/12/2010 11:31 AM ben leinfelder

merge 1.9.3 change to include karxml 2.1 documents in search/rendering

5476 08/04/2010 12:10 PM ben leinfelder

remove "indus" urls

5438 07/20/2010 03:56 PM berkley

adding dataone to the login org choice for the dev skin

5437 07/19/2010 02:15 PM berkley

reverting accidental cahgnes

5436 07/19/2010 02:02 PM berkley

fixing another null auth token bug

5401 06/24/2010 12:43 PM berkley

reverting accidentally committed changes

5399 06/24/2010 12:16 PM berkley

trying another build../cicore/cn-buildout/dataone-cn-metacat/usr/share/metacat/knb.war

5397 06/23/2010 03:45 PM berkley

MetacatPopulator is now working. It allows you to do a query from one metacat instance, then insert any returned docs into another metacat instance

5396 06/23/2010 01:56 PM berkley

d1client jar

5394 06/23/2010 12:25 PM berkley

tracked down streaming bug. now need to figure out a better way to fix it.

5392 06/15/2010 04:13 PM berkley

added a DataOneLogger for event notifications on the CN. The logger is called DataOneLogger and can be managed in the log4j.properties file

5391 06/15/2010 03:40 PM berkley

finished getLogRecords. Fixed some date bugs in metacat.

5389 06/15/2010 11:19 AM berkley

changed getLogRecords to use new classes for log events

5388 06/15/2010 10:45 AM berkley

new service layer jar

5385 06/11/2010 05:00 PM ben leinfelder

starting point for semtools skin. augmenting default skin with Annotation documents.
not yet semantically enhanced search capabilities, but you can see a listing of both EML and Annotations on the server.

5379 06/09/2010 05:03 PM berkley

mostly done with generating systemmetadata from legacy knb docs. need to write a better test and enable this through the ResourceHandler then it will be done.

5372 05/25/2010 05:15 PM Jing Tao

Commit the change for Madhusudan Gujral from java.net.URL url = new java.net.URL;
to java.net.URL url = new java.net.URL;

5367 05/18/2010 04:27 PM Jing Tao

Fixed bug the download link didn't work.

5361 05/17/2010 03:36 PM Jing Tao

Add a mapping between kar xml namespace and karxml.xsl.

5360 05/17/2010 03:34 PM Jing Tao

Add a style sheet to transform kar xml document.

5358 05/17/2010 10:32 AM berkley

added the renamed Java classes for ObjectList

5357 05/14/2010 05:57 PM Jing Tao

Change the search query according to the karxml change.

5356 05/14/2010 02:55 PM berkley

changed the detailCode for DataOne exceptions to a string

5355 05/14/2010 11:18 AM berkley

added getSystemMetadata to ResourceHandler and changed the url format to be meta/guid. added a new servlet reponse handler in the web.xml file to handle the new urls and send them to the RestServlet.

5354 05/13/2010 04:28 PM Jing Tao

Change the return type from kar to the namespace.

5345 05/10/2010 04:35 PM berkley

adding stax jar. if this is somewhere else, i'll remove it, but i'm unable to find it anywhere in dataone

5320 04/19/2010 10:14 PM Matt Jones

Refactored metacat to use dataone-service-api-0.3.0 jar file, with the new JIBX generated types and serialization. Included JIBX runtime jar in metacat to handle serialization and deserialization of SystemMetadata objects. Removed the old API jar file.

5319 04/19/2010 04:51 PM Matt Jones

Modifications to support the DataONE service API version 0.1.0. For DataONE, the get() and
create() services are partially complete. Several more functions and checks need to be added to
create() before it is viable. This DataONE support is not complete, and the current support breaks the MetacatRestClientTest for the time being (this client will eventually be removed).

5311 04/14/2010 11:31 AM daigle

Merge 1.9.2 changes back into the trunk

5302 04/06/2010 06:03 PM Matt Jones

Adding commons-io jar for the IOUtils utilities for stream manipulation.

5298 04/02/2010 11:29 AM Matt Jones

Modified readFromMetacat() to pass most exceptions up the call stack, which
allows creation of new entry points for calling reads. Still need to
continue factoring out the HTTPServletResponse that is passed in in order to
make entrypoints that are not servlet based possible. Problem now is in...

5297 04/01/2010 04:30 PM Matt Jones

Excluding the Maven ant tasks jar from the metacat war distribution because
it is not needed (its only used to build dataone-service at build time, and
is unused at runtime), and it conflicts with jar files checked in for Spring
as part of the geoserver install. Also updated dataone interface...

5295 03/24/2010 12:41 AM Matt Jones

Modified the build.xml to include a new task for building the dataone
service api package, which generates a jar file that is put into lib. This
task depends on maven being installed in maven.home, and depends on the
DataONE service_api being checed out in a sibling directory to the build....

5285 03/18/2010 03:06 AM Matt Jones

Adding a new property to be used as an identifier prefix by default.

5276 03/16/2010 12:33 AM Matt Jones

Modified table structure to change identifiers table (previously unused) to
represent a mapping between arbitrary string identifiers and metacat docids.
More information in https://trac.dataone.org/ticket/361. Modifications to
Oracle schemas were made but not tested.

5224 02/11/2010 08:48 AM Matt Jones

Modified ResourceHandler to change the GET url from /objects to /object to
match the DataONE method name.

5211 02/03/2010 06:58 PM Matt Jones

Merging in REST interface implementation that was created by Serhan Akin. Main change is
a refactored MetaCatServlet.java class, in which all of the handle* methods were moved
into a separate MetacatHandler.java class. This allows both the standard MetaCatServlet...

5202 01/27/2010 09:51 AM daigle

Populate esa home links with skin property value

5187 01/07/2010 01:37 PM daigle

change dropdown select event to work on IE.

5185 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5184 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5183 01/06/2010 02:03 PM daigle

Remove commas from the end of lists because they break IE

5182 01/06/2010 11:41 AM ben leinfelder

remove the "optional" tip since it is not currently optional

5180 01/06/2010 11:38 AM ben leinfelder

add properties expected by the DB property service

5178 01/05/2010 04:07 PM ben leinfelder

use @class attribute for path queries rather than @name

5165 12/18/2009 01:26 PM daigle

add method name to log messages and create configured thresholds for warning messages

5164 12/18/2009 01:22 PM daigle

add parc-moderators to config.username

5163 12/10/2009 12:59 PM Chris Jones

I've added the PARC and PISCO organizations to the delete and confirm form templates for the data registry application.

5155 12/08/2009 09:23 AM daigle

remove registry.config.username value

5148 12/02/2009 10:40 AM daigle

added a commented out line for auth.moderators for the parc system. This will get uncommented on the parc system and the existing auth.moderators will be commented out.

5147 12/02/2009 07:22 AM Chris Jones

I've removed the value for the PARC registry.config.site property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.

5146 12/01/2009 10:15 AM daigle

hard code parc home url

5145 12/01/2009 10:03 AM daigle

Redirect data.palmyraresearch.org to parc skin

5144 11/30/2009 11:08 AM Chris Jones

I've added the PARC organization to the login form template.

5143 11/30/2009 11:02 AM Chris Jones

I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.

5142 11/30/2009 09:58 AM Chris Jones

This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.

5141 11/25/2009 10:40 AM daigle

added parc to list of available skins.

5136 11/23/2009 10:05 AM Chris Jones

I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.

5135 11/23/2009 09:49 AM Chris Jones

I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.

5134 11/23/2009 09:47 AM Chris Jones

I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.

5133 11/23/2009 09:44 AM Chris Jones

I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.

5132 11/23/2009 09:41 AM Chris Jones

These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.

5131 11/23/2009 09:39 AM Chris Jones

I've added the PARC CSS file, which uses colors and images found at the PARC website.

5130 11/23/2009 09:37 AM Chris Jones

These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the http://www.palmyraresearch.org website layout (e.g. some navigation links have been removed).

5129 11/23/2009 09:34 AM Chris Jones

Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.

5128 11/23/2009 09:32 AM Chris Jones

I'm adding the parc.cfg configuration file, which is effectively a copy of the nceas.cfg file.

5126 11/23/2009 09:29 AM Chris Jones

This is the PARC XML configuration file. I've removed the EML beta 4-6 doctype identifiers since this skin will only deal with EML 2.1.0 documents.

5125 11/23/2009 09:26 AM Chris Jones

I'm adding the Metacat metadata properties file for the PARC installation.

5124 11/23/2009 09:25 AM Chris Jones

I'm adding the properties file configured for the Palmyra Atoll Research Consortium's installation.

5123 11/23/2009 09:15 AM Chris Jones

I'm adding in the parc directory, which will contain the skin for the Palmyra Atoll Research Consortium.

5122 11/19/2009 08:19 AM ben leinfelder

special handling for RDF namespace documents (semtools project)

5121 11/13/2009 04:03 PM daigle

Start to fix I.E. gui issues

5119 11/10/2009 01:31 PM ben leinfelder

check for IE6 and show warning if they are using it

5118 11/09/2009 02:43 PM daigle

Remove seconds and minutes values from workflow scheduler and add weeks and months.

5117 11/09/2009 02:42 PM daigle

Include kar id in delete url parameters so resultset will render after delete

5106 11/06/2009 01:05 PM ben leinfelder

add id attributes for form elements (in case IE6 needed them) but it appears they are not required