Metacat

added code to do database query for listObjects

only call response.getWriter() when we are about to send text/xml to the client, otherwise we end of calling both getWriter() and getOutputStream() - resulting in an illegal state.

use detected XML encoding when reading/writing files
use UTF-8 as default when performing queries in the DB (assume DB is using UTF-8)
remove as many PrintWriters (uses system default character encoding only) as possible and construct OutputStreamWriters where explicit encoding can be given....

add support for EML 2.1.1

reformatting logs for robert

added another logging statement

hopefully fixed bug with systemmetadata replication

debug statements in dbsaxhandler

fixing problems with replication and systemmetadata

added functionality to set access permissions to system metadata the same as the document that it describes

fixed major bug in replication where the document info was being truncated due to a poorly implemented sax parser

replication of guids now works. tested this for both forced replication and update/insert/delete triggered replication

fixed bug where guid end tag wasn't getting printed

added a method in IdentifierManager to get a guid from a docid and rev. added fields in the documentinfo replication document to pass the guid. now need to handle the guid and insert it into the table if its found

Modifications to support the DataONE service API version 0.1.0. For DataONE, the get() and
create() services are partially complete. Several more functions and checks need to be added to
create() before it is viable. This DataONE support is not complete, and the current support breaks the MetacatRestClientTest for the time being (this client will eventually be removed).

Pass the doc xml as a string to docImpl.write and writeRepication. This is so a reader can be create for the parsing and for the write to disk. Also created a db access class for xml query result deletion.

Log doc and rev query counts and times. Fix mis-spellings.

Change add sql to use a prepared statement. Only try to download a cert if a url was provided.

change AccessControlForSingleFile to only be instantiated for one file. move ACL methods to AccessControlForSingleFile. Change format of access sections returned to EML 2.1.0.

Move access control source to it's own directory.

Change location of PropertyService to properties directory

Change MetaCatVersion to MetacatVersion

Create replication directory. Move replication code there. Use log4j for replication logging (rollingfileappender). Beef up replication logging and error control.

Roll back replication user changes. Fix code that converts access levels to integer and to text.

Introduce replication user. Use the fileutil writer methods instead of writing directly.

Beef up exception handling from file utilities. Move UtilException to MetacatUtilException to eliminate conflict with similar exception in utility package.

Replace System.out.println statements with logMetacat statements.

Update replication documentation and fix code so that replication log is available.

Renamed MetaCatUtil to MetacatUtil

Rename LDAPUtil to AuthUtil

Add some generic typing

check for existing access control rows before inserting (we do not need duplicate rows specifying the same access control)

in cases when only access control is being modified, we can temporarily ignore the exception thrown my the write method, insert the updated access control rules, then deal with the write exception. this occurs when the docid remains the same (no revision increase) but the permissions have been altered.

use correct log directory/file for replication errors

replicate xml_access entries across servers.
see: http://bugzilla.ecoinformatics.org/show_bug.cgi?id=3464
note: still needs to be tested...but needed to be checked in for other metacat installations to be updated....

Move the DBAdaptor accessor into a DatabaseService class

qualify xml and eml properties with an xml. prefix

Fully qualify spatial and replication properties

Use qualified properties

Use SystemUtil.getContextDir() instead of constructing directory path.

Differentiate between tomcat directory and deployment directory.

Append context url onto system id instead of server url.

Add addProperty and addPropertyNoPersist for new properties

Merge 1.9 changes into Head

Add even log in replication.

Somehow the change went to the head rather than branch. So i rollback the change in head.

This commit is for branch. In this commit the correct ip and user name will be stored in access_log table in replication event. However, it only for Forcereplication. And the test isn't completed yet. This commit is only for future use.

Removed the release ant token from all files in 'src'.

Using join query for more efficiency.

Fixed bug to get docid list.

Add more info transfer.

Replacing MetaCatUtil.debugMessage or MetaCatUtil.logMetacat call with logMetacat (private Logger object) call

Add rev in get data doc info.

Add date info.

Fixed the bug in xml segment is not correct to express revision document list.

Add code to handle deleted document replication.

Add code to get revision table info

Add code to check the if the user has permission to start or stop timed replication.

Use a util function to get replication server.

Persistant timed replication parameter.

Add new feature that delete can be broadcasted by force replication.

Add a code to load eml201 parser to fix the bug that couldn't generate access rule for eml201 doc.

Made initial changes for accepting EML version 2.1.0 in Metacat

Change eml2 to eml200

Fixed bug in replication if doctype is null.

Fixed a bug that replication didn't do inline data.

Change the year from YY to YYYY

Revise initial value for server registry.

Change format from yy-mm-dd to mm/dd/yy.

Get rid of to_date function.

Revise getURLContent method and give up httpclient.

Using httpclient as http and https protocol handler.

Revise update method. Every write action will check out a db connection. So it can handle a huge mount of write action.

Add code to handle initialize eml2 parser.

Change debugMessage

Add code to handle text code was splited.

Merge cvs branch replication to cvs head.

Merge DBConnection branch to head.

Add test ssl work or not in handleUpdateRequest method too.

Add error message to outPut in catch clause in handleGetDocument Request.

Add a test action in replication. Before handle read and read data file action. Metacat will take a test to see if the trust key in key store. If not, wouldn't replicate documents.This is security issue.

Add two controls to send or accept data.

Apply DocumentImp.writeReplication and DocumentImp.writeDataFile in deltaT replication

Fixed some db connection bug.

Use DocumentImpl.getDocHomeServer method to get home server in method handleGetDocumentInfo

Revise the method getDocumentInfo. Home server of documnet is added in it.

In handleUpdateRequest method, if a metacat was configured to be hub super, it can provide any documents in its database. If the metacat is notsuper, it only provide the documents list which home host is itself.

Add a new attribute in updated doc list: data file. So from this attribute, we can tell which document is a data file.

Using DocumentImpl.writeDataFile method in handleReplicateDataFileRequest. Make code simple.

Add two method: handleGetDataFileRequest and handleForceReplicateDataFile. The two methods will handle data file replication.

Figure out the configuration issue about replication. If metacat was configured to set replication off in build.xml, it will reject replication.

Adding a method named handleGetDataFileRequest. User can download data file from replcication now.

Fixed the bug that to handle forceReplication action

made it so we can now use multiple accessfilestypes and packagdfiletypes in the metacat.properties file. Also fixed a bug introduced when the 'http://' was removed from behind the server name in the loaddtd.sql script and the knb.xml file

for action=servercontrol&subaction=add
added function for downloading of the certificate file
from the specified URL of the source server
and uploading it onto this server

changes in replication to use https

fix around one way replication:
when server A sends document to the servers in its list of replication servers with replicate=1 in xml_replication table,
the server B received the document does NOT need the opposite check on its end.

fixed the compilation bug about the change of group parameter in DocumentImpl.write()

added check to see if a replication server's IP matched it's DNS entry and the entry in the replication table

there were more mentions of DOCTITLE attr - cleared them

fixed some problems with database connections getting a time out error. Also updated some catch statements