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# Date Author Comment
5211 02/03/2010 06:58 PM Matt Jones

Merging in REST interface implementation that was created by Serhan Akin. Main change is
a refactored MetaCatServlet.java class, in which all of the handle* methods were moved
into a separate MetacatHandler.java class. This allows both the standard MetaCatServlet...

5210 02/03/2010 05:03 PM Matt Jones

Adding missing brackets in else clause. Need to verify with Daigle that this is what he meant.

5208 02/03/2010 01:29 PM daigle

Move the chunking of large test element data to centralized location in DBSAXNode.writeChildNodeToDB(). Beff up logging

5207 02/03/2010 01:16 PM daigle

Beef up log messages

5205 02/03/2010 01:11 PM daigle

Add debug log statements

5204 01/28/2010 12:35 PM daigle

make sure querygroup is not null before trying to print it.

5201 01/26/2010 03:50 PM daigle

Get the latest revision from metacat when a modify call docid does not have a revision number.

5200 01/25/2010 03:02 PM daigle

Send appropriate message when trying to update a docid that was previously deleted.

5199 01/22/2010 10:06 AM daigle

Reformat file. No code change.

5198 01/21/2010 03:02 PM daigle

do a quick retry if building path index fails with a SQL error

5197 01/20/2010 02:55 PM daigle

Make sure buildIndex throws an exception if it has a sqlexception. That way the indexing object will be added to the indexing queue and reprocessed.

5195 01/19/2010 10:25 AM daigle

Pass the doc xml as a string to docImpl.write and writeRepication. This is so a reader can be create for the parsing and for the write to disk. Also created a db access class for xml query result deletion.

5189 01/11/2010 08:54 AM daigle

Add comments

5188 01/11/2010 08:54 AM daigle

make constants final

5186 01/06/2010 04:18 PM Jing Tao

Fix the bug of http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4645. handleGetRevisionAndDocTypeAction will search both xml_documents and xml_revisions table.
It also changed some constrain in AccessionNumber when user update a document, of which all previous versions are in xml_revisions table.

5177 01/05/2010 02:08 PM daigle

Add a sleep statement between getting the dtd from source and checking for it via url. Add method names to log output.

5175 01/04/2010 09:01 AM daigle

Log doc and rev query counts and times. Fix mis-spellings.

5174 01/04/2010 09:00 AM daigle

Log doc and rev query counts and times. Fix mis-spellings.

5172 12/30/2009 09:22 AM daigle

remove call to print busy db connections

5170 12/30/2009 09:20 AM daigle

Add debug to show sql

5169 12/21/2009 12:10 PM Duane Costa

Fix for Bug #4637 - Metacat Harvester fails to catch some insert and update failures. As per comments in the bug entry, the Metacat Harvester logic has been modified to examine the Metacat client return string to confirm that it contains the substring "<success>" following an insert or update operation. It no longer considers just the absence of an exception as indicative of a successful operation.

5168 12/18/2009 01:39 PM daigle

log connection warnings only when thresholds are exceeded. Add method names to log output

5167 12/18/2009 01:37 PM daigle

add method name to log statements

5166 12/18/2009 01:36 PM daigle

fix spelling of word additional

5165 12/18/2009 01:26 PM daigle

add method name to log messages and create configured thresholds for warning messages

5162 12/09/2009 11:54 AM daigle

Change log levels where appropriate and add class/method name to output.

5161 12/09/2009 11:01 AM daigle

Change warn messages to info

5160 12/08/2009 11:40 AM daigle

beef up error log messages

5159 12/08/2009 11:39 AM daigle

Make sure session data exists before extracting information

5158 12/08/2009 11:39 AM daigle

Separate code to do tls and non-tls authentication. Introduce AuthTLSException to make error handling easier.

5157 12/08/2009 10:20 AM daigle

Beefed up the logging

5151 12/02/2009 04:00 PM daigle

Change add sql to use a prepared statement. Only try to download a cert if a url was provided.

5150 12/02/2009 03:59 PM daigle

change unregister error message to be an info message

5139 11/24/2009 12:28 PM daigle

Fix errors in workflow scheduler unit test

5137 11/24/2009 12:25 PM daigle

Do not register the session service

5122 11/19/2009 08:19 AM ben leinfelder

special handling for RDF namespace documents (semtools project)

5120 11/10/2009 03:13 PM daigle

add connection serial number where it was missing.

5116 11/09/2009 10:37 AM daigle

Add ability to schedule daily, weekly and monthly jobs.

5115 11/09/2009 10:07 AM daigle

Format and add comments.

5112 11/06/2009 02:47 PM daigle

add getaccesscontrol and setaccess api calls

5109 11/06/2009 02:44 PM daigle

Handle the case of trying to insert a conflicting permission order for a document

5108 11/06/2009 02:43 PM daigle

move dbconnection object out of base class and create it for each db access so it can be released

5107 11/06/2009 02:41 PM daigle

Add success message to metacat response for setaccess action

5104 11/05/2009 10:32 AM ben leinfelder

handle multiple <principal> elements in the allow/deny blocks

5103 11/04/2009 03:05 PM daigle

Verify we are in the permission and principal sections before setting values on dao object.

5100 11/03/2009 11:52 AM daigle

Use OR to add permissions, not AND

5099 11/03/2009 10:31 AM daigle

Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.

5098 10/30/2009 03:39 PM daigle

change AccessControlForSingleFile to only be instantiated for one file. move ACL methods to AccessControlForSingleFile. Change format of access sections returned to EML 2.1.0.

5096 10/30/2009 03:34 PM daigle

Removed some old commented out code

5095 10/30/2009 03:31 PM daigle

Remove unneeded references to Timer

5094 10/27/2009 03:42 PM ben leinfelder

SMS-related addition: retrieve docids for a given doctype

5093 10/26/2009 10:20 AM Chris Jones

QueryTerm.java will produce an incorrect SQL statement when there is an attribute in the XPath being used to search on. Regardless of the presence of the attribute, the clause:

(SELECT nodeid FROM xml_index WHERE path LIKE " + "'" + path + "') "

would be added to the query....

5091 10/16/2009 11:12 AM daigle

Create access dao and centralized db access classes. Update create access code to combine access records for principal/doc/accesstype when multiple exist.

5090 10/16/2009 11:10 AM daigle

Move access control source to it's own directory.

5089 10/16/2009 11:10 AM daigle

Move access control source to it's own directory.

5082 10/13/2009 03:01 PM daigle

Add ability for doc owner to add user access to workflows.

5079 10/06/2009 10:58 AM daigle

Add authorization check before scheduling a job in the workflow scheduler

5078 10/06/2009 10:57 AM daigle

Change RequestUtil forwardRequest() method to throw MetacatUtilException.

5076 10/06/2009 10:55 AM daigle

Change RequestUtil forwardRequest() method to throw MetacatUtilException.

5072 10/02/2009 01:11 PM daigle

Add authorization functionality

5071 10/02/2009 01:07 PM daigle

Change sanparks skin to log in with browser session instead of metacat client session so session can be validated on other pages.

5070 10/02/2009 12:59 PM daigle

Add user name to SessionData object

5069 10/01/2009 03:20 PM ben leinfelder

use arguments for the main() method - hardcoded URLs and test docids are poor form

5066 10/01/2009 12:12 PM ben leinfelder

return InputStream instead of Reader in the MetacatClient read() and readInlineData() methods. Can now handle binary data
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4432

5057 09/04/2009 03:12 PM daigle

Add session validation to metacat tpc and workflow scheduler. Fix sanparks skin session management so it always uses the logged in session id.

5056 09/04/2009 03:08 PM daigle

Make some error messages more understandable

5053 09/03/2009 01:47 PM ben leinfelder

add performance debugging statements for dataquery action

5048 08/27/2009 12:07 PM daigle

remove web directory

5047 08/27/2009 12:06 PM daigle

Remove the recently created metacat web servlet

5045 08/27/2009 12:04 PM daigle

change name of workflowjobid parameter to be workflowjobname which is more accurate

5044 08/27/2009 12:04 PM daigle

change name of workflowjobid parameter to be workflowjobname which is more accurate

5043 08/27/2009 12:03 PM daigle

change pw.println to print to remove newline at end of url

5042 08/27/2009 12:02 PM daigle

Add unshedulejob to base class

5041 08/26/2009 02:20 PM daigle

Add session Validation action and session timeout functionality.

5040 08/26/2009 02:09 PM daigle

Fix spelling in debug statement

5039 08/24/2009 02:59 PM daigle

Added workflow scheduler directory with supporting files

5033 08/24/2009 02:41 PM daigle

Make properties handlers implement an interface so you can use configurable or non-configurable properties.

5030 08/24/2009 02:34 PM daigle

Change location of PropertyService to properties directory

5028 08/14/2009 05:38 PM daigle

Persist skin properties across installations

5027 08/14/2009 02:26 PM daigle

Change MetaCatVersion to MetacatVersion

5026 08/14/2009 02:24 PM daigle

Rename MetaCat to Metacat

5025 08/14/2009 02:22 PM daigle

Move document specific utilities to DocumentUtil from MetacatUtil. This makes it easier to define a layer between the core metacat services and the rest of the code.

5023 08/12/2009 02:12 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Remove import of deleted class

5022 08/12/2009 01:58 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Add documentation files to the 'docs/dev/oaipmh' directory. * Delete two obsolete files. * Modify class description comment in MetacatRecordFactory.java

5021 08/10/2009 01:45 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair. * Terminate harvest if login failed. * Add runHarvester.sh shell script

5020 08/07/2009 02:34 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair.

5018 08/07/2009 10:35 AM daigle

Updated comments to more accurately reflect the API

5016 08/06/2009 10:59 AM daigle

Fix references to db classes that were moved and refactoring missed.

5015 08/04/2009 02:32 PM daigle

Create database and shared directories for database management code and shared code respectively.

5014 08/04/2009 02:30 PM daigle

Create replication directory. Move replication code there. Use log4j for replication logging (rollingfileappender). Beef up replication logging and error control.

5013 07/31/2009 04:47 PM daigle

Add the ability to delete a scheduled workflow (move status to deleted in database)

5012 07/30/2009 04:58 PM daigle

Added end time to workflow scheduler.

5011 07/30/2009 01:27 PM daigle

Propagate the kar id throughout the configuration screens.

5010 07/30/2009 01:26 PM daigle

Populate admin login user dropdown with configured admins

5005 07/30/2009 10:20 AM daigle

Input date formatting changes

5004 07/30/2009 10:19 AM daigle

Use context url instead of server IP. Server IP breaks if the server does not have an externally facing IP (behind a proxy server)

4999 07/27/2009 02:47 PM Duane Costa

Implement fix for Bug #4245: Harvester command line scripts don't execute.

4996 07/27/2009 12:50 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
Check to see whether metacat database has changed since last refresh date, and if it has, refresh catalog objects in memory.

4986 07/20/2009 06:42 AM daigle

Fix issue where every scheduled job gets the same parameters.

4984 07/19/2009 11:18 PM daigle

Created new AuthStub class to always authenticate.