Metacat

This is the merge from the branch WEB_UI_REDESIGN_BRANCH back into the head.
The only files that have been removed are those in lib/style/eml2; other files
that have been cvs removed (only from lib/ and lib/style) have been re-added
elsewhere (i.e. moved from one directory to another)....

Remove unneeded file Upload999.java

If the sessionid is null and user will be treated as public.

Get rid of doctype declare in transfer.

Set system id for transforming.

Modified a method and can be reused.

If db pool size is maxium and no connection is free. The checkout will be wait.

Add a checking for xml_nodes insert finished, then start build index table.

Remove UPPER function for >, < operator.

Add a new search mode not-contains.

Modified a debug Message.

Add a new method to find document from queryspecification.

Revise code so it can be called directly.

Revied the class.

New class will be used in metacat ecogrid impl.

• empty log message ***

Updated more tests on session reuse. Made the http calls set the sessionid
explicitly rather than relying on cookies being passed around statically.
Still need to modify HttpMessage to get rid of the static cookie.

Renamed the upgrade sql files to more understandable names, updated the
build file to include some new targets for running these files, and
updated the installation docs to clarify which upgrade scripts need to
be run and when.

New versions of the Metacat client API that allow access to the sessionId
so that a session can be reused over several different instances.

Fixed the sessionId handling code to now properly return the sessionId
in the login response message. Updated junit tests to test this issue.

Modified metacat to now provide the session identifier in the response
xml message when a login is called. This has not been fully tested.
I removed the HttpMessage class from metacat in favor of using the version
of that class that is found in the utilities module. This may cause some...

Fixed a bug for importing package

Fixed the bug that if path query without xml declaration will cause a non well-formed result doc.

A sample application program to call metacat string service.

Fixed some bugs in this file.

Implementation for the interface.

Add a new client interface with string type for web service.

Drop xml_accesssubtree table before the xml_document table.

in toxml method, add new code to handle dtd.

Add a new constructor to hanlde DTD node.

Add code to handle public id and system id.

Implement logout method.

Add a logout method.

Implemented the update and delete methods in the interface, along with tests.

Implemented the "insert()" method and wrote a test to test it. The new test
depends on the property "newdocid" be set to something unique in the build.xml
file so that the insert will work properly. Probably need to fix this to be
some kind of autoincrement counter or random number so that it can be run...

Refactored to use IOUtil routines. Reformatted for within-file consistency.

Implement query method.

Add metacatinaccessible exception for query.

Implemented the 'read' API call. Some more to go...

Wrote the login() function, the first of the series of API calls for
the metacat client to be implemented. Also wrote a test class to
test the API functionality.

If uploading failed, the inline data will be deleted either.

If xml document uploading failed, the inline data file will be deleted either.

Added a new subpackage (edu.ucsb.nceas.metacat.client) which is a client
access library for the metacat. There is an interface (Metacat.java) that
provides simple access methods for the main metacat functions. This is to
support clients like Morpho and others that want to programatically access...

JAVA 1.3 doesn't support this FileWriter(File fileName, boolean append). But 1.4 does.
Change to FileWriter(String fileName, boolean append). Both 1.3 and 1.4 support.

Fixed bug in replication if doctype is null.

Fixed a bug that replication didn't do inline data.

Change a array size from 4*10(testing) to 4*1024.

Using reader replacing string to read inline data.

Using reader to replace string to read inline data.

Change the way to handle inline data.

When character size is greater than 4000, it will write to db.

Change string to stringreader to save memory.

Change debug level.

Change the year from YY to YYYY

Revise inital value for insert a new server. Change some debug level.

Revise initial value for server registry.

Fixed a bug in registryDataFile.

Delete a debug line.

Change the date format from yy-mm-dd to mm/dd/yy.

Change format from yy-mm-dd to mm/dd/yy.

Get rid of to_date function.

using toDate method rather than to_date function directly.

Revise the toDate method for sql server.

Get rid of toDate method and inherit from AbstractAdapter directly.

Get rid of toDate method. It inherentise from AbstractAdaptor.

Add a concrete method toDate which can transfer text string to date type.

Add new method to handle toDate function.

Fix somebugs for the script.

MetaCat Servlet changed to get correct docid

Update script for sql: change a unique constraint in xml_relation table. Adding new fields in xml_replication and xml_access table. Adding new talbe xml_accesssubtree.

EML interface Login Servlet

Metacat EMl Upload Interface

• empty log message ***

• empty log message ***

got interservlet session handling working.

Register stmml.xsd too.

Registered stmml.xsd too.

fixed errors with jing and my merges

changes to make session management between monarch and metacat work.

Revise code and make it more generic to pass parameters to style sheet.

Revise the code for read from metcat.

Add the code to handle parameter for style sheet.

web.xml assocated with metacat push harvester

servlet for metacat push harvest

web page for initiating metacat push harvest

upload class for metacat harvester

Field data will be normalized.

Add code to hanlder wirte and update funtion.

Create a foreign key for table accesssubtree.

Add a foreign key in xml_accesssbutree table.

Add a foreign key in xml_accesssubtree table.

Add a foreign key in accesssubtree table.

Add code to write relation table.

Add some debug message.

Add a foreign key constrain in xml_accesssubtree table.

add code to make sure subject, relationship and object is not null.

Add delete access subtree in delete method.

Get the file size limit from property rather than hard code.

Don't write online data id into db.

Fixed bug to find catalog id for eml2 document.