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# Date Author Comment
9116 02/12/2015 03:32 PM Jing Tao

Add the timestamp for the printing out the start and end of hazelcast synchronization.

9111 02/09/2015 05:38 PM Jing Tao

Call the method lock.lock() immediately after getting the lock. Otherwise, if an exception happened between the two calls (in another word, lock.lock() was called), lock.unlock() can cause an issue:
Current thread is not owner of lock!
See https://redmine.dataone.org/issues/6836.

9107 02/06/2015 04:46 PM Jing Tao

Add a cap to only write 512 characters of the user-agent to db.

9099 02/06/2015 12:10 PM Matt Jones

Modify v1 and v2 calls to MultipartRequestResolver to use MAX_UPLOAD_SIZE from configuration.

9098 02/06/2015 11:55 AM Jing Tao

The constrcutor of EventLogData missed the user-agent field. So the user-agent wasn't recorded.
The bug was fixed.

9096 02/06/2015 09:21 AM ben leinfelder

organize imports. move exception-throwing method call into try block.

9095 02/06/2015 09:15 AM ben leinfelder

use HttpMultipartRestClient since the DefaultHttpMultipartRestClient was removed from d1_libclient_java

9094 02/06/2015 01:16 AM Matt Jones

Updated D1ResourceHandler to not hardcode a file size limit. This will allow
large, multi-gigabyte files to be uploaded, but still needs testing. The limit
is now drawn from the metacat.properties file. An alternative would be to inspect
the Content-Length header of the request and set the max to a value greater than the...

9093 02/04/2015 04:44 PM Jing Tao

The setReplicationStatus method only supports sid and the setRightsHolder method supports both PID and SID.

9092 02/04/2015 03:10 PM Jing Tao

Add the code transform a sid to a pid in publish, getPackage and view method. Fefer dataONE #6734.

9091 02/04/2015 02:28 PM Jing Tao

Fixed a bug that it should use getReplica rather than get method.

9090 02/04/2015 09:47 AM Jing Tao

Add the option -h for tar command in order to follow the link.

9087 02/03/2015 02:10 PM Jing Tao

The CN.setReplicationPolicy method now only support PIDs. Refer to https://redmine.dataone.org/issues/6734.

9083 02/02/2015 09:50 AM Jing Tao

Went through the v2 ObjectFormatList and convert every v2 ObjectFormat to v1 ObjectFormat and put them into a v1 objectFormatList.

9078 01/27/2015 04:30 PM Jing Tao

Add the log messages to indicate the hazelcast synchronization starting and ending.

9077 01/26/2015 04:52 PM Jing Tao

Add the code to handle sid in the publish method.

9076 01/26/2015 02:42 PM Jing Tao

Add the code to exclude the sid in the view and getPackage.

9074 01/22/2015 05:50 PM Jing Tao

Add a converter to convert the V2 Log object to the V1 Log object.

9073 01/20/2015 02:25 PM Jing Tao

Add the rules to check the if a sid is valid in the updateSystemMetadata method.

9072 01/16/2015 05:59 PM Jing Tao

Implemented the feature to support the identifier(both sid and pid) feature in the objectLists method.

9071 01/16/2015 02:22 PM Jing Tao

The MN.listobjects and CN.listobjects methods will call the one in the D1NodeService class.

9070 01/16/2015 12:29 PM Jing Tao

Add the code to check if the pid is an SID in the registerSystemMetadata method.

9069 01/15/2015 05:36 PM Jing Tao

Add code to check if the sid equals pid for the method checkSidInRegisterSystemMetadata.

9068 01/15/2015 05:27 PM Jing Tao

Moved the rules for the SID from D1NodeService.create to MNodeService.create.
Also moved the code to check the validation of an pid from D1NodeService.create to MNodeService.create, MNodeService.replicate and CNodeService.create.

9067 01/15/2015 04:56 PM Jing Tao

Add the code to check if a sid is legitimate in the method create and registerSystemMetadata.

9066 01/14/2015 05:33 PM Jing Tao

The the code to handle sids on the v2 api - setReplicationPolicy, setReplicationStatus, setAccessPolicy and setObsoletedBy.

9065 01/14/2015 04:57 PM Jing Tao

Add the code to handle if a identifier is a sid in setAccessPolicy, setReplicationPolicy, setObsoletedBy and setRreplicationStatus.

9064 01/07/2015 04:52 PM Jing Tao

Comment out a print of an error message. It will show up for every public request.

9063 01/07/2015 04:37 PM Jing Tao

Add the code to handle SID in the getLogRecords method.

9062 01/07/2015 04:03 PM Jing Tao

In the getLogRecords method, the pidFilter is checked if it exists.

9061 01/07/2015 04:02 PM Jing Tao

In the getLogRecords method, the pidFilter is checked if it exists.

9059 01/07/2015 12:01 PM Jing Tao

Fixed a bug that the getLogRecords can't handle the case that the event is null.

9057 01/07/2015 12:00 PM Jing Tao

Fixed a bug that the getLogRecords can't handle the case that the event is null.

9056 01/06/2015 03:32 PM Jing Tao

Add the code to check the if the new series id is legitimate in the systemMetadataChanged method.

9051 12/31/2014 03:49 PM Jing Tao

Add the code to support the sereis id on isAuthorized and systemMetadataChanged method.

9050 12/30/2014 04:34 PM Jing Tao

Add the code to handle the sid in the delete and archive method.

9048 12/30/2014 02:09 PM Jing Tao

Fixed a bug in comparing two identifiers in the update method.

9047 12/30/2014 11:04 AM Jing Tao

Add a check that the sid shouldn't equals the pid in the update and create method.

9046 12/29/2014 05:10 PM Jing Tao

Add the code the check if the format of the sid is valid in the system metadata.

9045 12/29/2014 05:06 PM Jing Tao

Add the enforcement for the sid in the create method.

9044 12/29/2014 04:26 PM Jing Tao

Enforce the sid requirement in the update method.

9043 12/29/2014 03:03 PM Jing Tao

Check if the identifier is a sid for the v1 update.

9041 12/29/2014 12:23 PM Jing Tao

Add the code to handle the deleted identifier in the checking v1 system metadata existing method.

9040 12/29/2014 11:42 AM Jing Tao

Enforce the mn.getChecksum only to handle an PID.

9038 12/24/2014 11:41 AM Jing Tao

Add the series id to the system metadata.

9037 12/24/2014 09:47 AM Jing Tao

Implement the series id in the getSystemMetadata method.

9036 12/23/2014 04:53 PM Jing Tao

Looking for sid for the method describe.

9033 12/22/2014 02:31 PM Jing Tao

Refactor the code to check a pid exists in the v1 api.

9032 12/19/2014 04:59 PM Jing Tao

Modified the get method to handle the sid in the v2 api.

9030 12/19/2014 03:10 PM Jing Tao

Change a method name to use pid rather than guid.

9026 12/17/2014 04:57 PM Jing Tao

Add the code to get the most recent version of a sid which all pids are obsoleted.

9024 12/16/2014 06:50 PM Jing Tao

Fixed a bug that the method getLocalId swallowed an exception incorrectly in the IdentifierManager.

9023 12/12/2014 04:25 PM Jing Tao

Fixed a bug that some service failure exceptions were handled as the NotFound exception.

9017 12/11/2014 03:24 PM Jing Tao

1. In the identifierExists method, the code to check if the identifier exist on the serial-id fields of the system metadata table.
2. Fixed a bug on the identifierExists - it considered an identifier didn't exist when the determining process threw an exception.

9016 12/10/2014 04:33 PM Jing Tao

Add a method to check if a serial id exists.

9015 12/09/2014 05:03 PM Jing Tao

Add a method to get the pid of the head version of a sid.

9014 12/09/2014 01:10 PM ben leinfelder

add Annotator Store implementation -- pass through to D1 API for the AnnotatorJS API

9012 12/09/2014 08:38 AM ben leinfelder

use 2.5.0 for current DB version

9011 12/02/2014 05:15 PM Jing Tao

Don't remove postgresql 8.4 and 9.1
Don't remove data directory of postgresql 8.4

9009 12/02/2014 02:08 PM ben leinfelder

include person's full name in the JWT returned from /token

8993 11/20/2014 09:21 AM Chris Jones

Merge changes in the 2.4 branch into the trunk for the ORNL Mercury schema support. References https://projects.ecoinformatics.org/ecoinfo/issues/6619.

This schema is maintained by Jim Green () and Ranjeet Devarakonda (). The schema uses a subset of the FGDC 1998 CSDGM elements, along with custom elements specific to the Mercury Metadata web application. Support is included in Metacat for Coordinating Node operations in the DataONE network.

8991 11/20/2014 09:00 AM Jing Tao

Fixed a bug that the reindex of data objects may index an archived data object.

8986 11/19/2014 04:59 PM Jing Tao

Fixed a bug that the solr index of data files doesn't reflect the change of access control.

8983 11/19/2014 12:52 PM ben leinfelder

[merge from 2.4 branch] use solr schema upgrader for 2.4.2 release -- need to replace the solr schema to include geohash fields

8979 11/19/2014 12:20 PM ben leinfelder

add 2.4.2 upgrade scripts so they are available in the 2.5.0 release as well

8977 11/19/2014 12:17 PM ben leinfelder

remove AnnotatorService completely - was moved to cn-index-processor

8972 11/17/2014 09:29 PM ben leinfelder

let metacat-index lookup annotations for indexing rather than the metacat "reindex" action.

8971 11/17/2014 04:30 PM Jing Tao

Add delete log for data objects on CNs.

8964 11/14/2014 11:20 AM ben leinfelder

only index non-empty comment text

8963 11/14/2014 11:13 AM ben leinfelder

index both tags and text from annotateit.org

8961 11/13/2014 05:59 PM ben leinfelder

query by consumerKey until the pid search facets are fully supported on annotateit.org

8960 11/10/2014 02:34 PM ben leinfelder

add JkOptions directive and encoded slash options for dataone and solr query support in the URLs that metacat can get (they were in the -ssl version of this file already)

8959 11/10/2014 02:22 PM Jing Tao

During the replication, the remote content will be saved without alteration.

8953 11/05/2014 01:42 PM ben leinfelder

allow per-document reindexing to be initiated by any user (to support third-party annotations)

8948 10/31/2014 05:36 PM Jing Tao

Write the input stream into the file system without alteration in dataone create and update methods.

8946 10/31/2014 05:09 PM ben leinfelder

look up annotations when reindexing a given pid. still very much a prototype in that we are looking up annotations from an external annotator-store. TODO: add pid filtering to query when annotateit.org supports it (pending upgrade on their site).

8945 10/31/2014 04:07 PM Jing Tao

add the code to install xmlstarlet.

8944 10/30/2014 07:58 PM Jing Tao

Find files of which type is link.

8942 10/28/2014 08:23 PM Jing Tao

Keep /var/lib/postgresql/8.4/main directory.

8941 10/28/2014 04:11 PM Jing Tao

Add the code to stop tomcat and apache.

8940 10/28/2014 04:03 PM Jing Tao

Add the "-y" option to force removing the old postgresql without prompting a y/n question.

8939 10/28/2014 02:07 PM Jing Tao

Restore the database for a gzipped sql file.

8938 10/28/2014 01:35 PM Jing Tao

Added the code to gzip the output file in the dumpall command. This will save disk space.

8937 10/24/2014 03:46 PM Jing Tao

Modified the redirect rules which didn't work.

8936 10/24/2014 02:50 PM Jing Tao

Add the code to add the attribute useHttpOnly='false' to the Context element in the context.xml file.

8935 10/24/2014 01:02 PM Jing Tao

Fixed a bug the code can get the argument from the command line.

8934 10/24/2014 12:47 PM Jing Tao

Added the code to change the permission of the backup file so the postgres user can read it.

8933 10/24/2014 12:24 PM Jing Tao

Added the code to check if the metacat backup file exists.
Added the code "exist 0" at the end of the scripts.

8932 10/24/2014 12:08 PM Jing Tao

Added the .conf to those site files since the new apache server only loads the sites with the extension.

8931 10/24/2014 09:45 AM Jing Tao

Add the code to vacuum the db.

8930 10/23/2014 04:32 PM Jing Tao

Add the code to enable the 8009 port for ajp connection in the server.xml of tomcat7.

8929 10/22/2014 12:29 PM Jing Tao

Added the code to modify the geo data directory in the metacat.properties file.

8928 10/22/2014 11:43 AM Jing Tao

Fixed some bugs to restore postgresql data.

8927 10/21/2014 09:30 PM Jing Tao

Add the code install some components for installing tomcat7

8926 10/21/2014 09:13 PM Jing Tao

Use a variable to replace the hard code.

8925 10/21/2014 07:30 PM Jing Tao

Use the version directly.

8924 10/21/2014 07:28 PM Jing Tao

Fixed a typo.

8923 10/21/2014 07:26 PM Jing Tao

put the date to an output file.

8922 10/21/2014 06:56 PM Jing Tao

A script for vacuum the db.

8921 10/21/2014 06:32 PM Jing Tao

Add a script to move the db from 8.3 to 9.1 base on a dumped file.