Metacat

merging changes from branch

merging test changes into the trunk

fixed identifier manager problem with getting guid for systememtadaa doc

fixed bug in access control where the sessionid was not correctly passed along so changes of privileges were not being made

working on a function to create dataone system metadata docs for legacy metacat objects that do not have SM.

removed CrudService dependency on servlet params. CrudService is now a singleton. I'm getting an error from metacat saying it can't find teh systemmetadata schema, even though it is, in fact, registered with metacat. need to identify why this is happening.

added a test for CrudService and added tests for IdentifierManager for each method

Add a debug statement to show existing doc id

Refactored putObject method to separate the create() and update() portions in order to match the method signatures needed for DataONE.

Modified ResourceHandler.deleteObject() to take a globally unique id (guid)
as input rather than a metacat-conformant docid. The guid is translated
into a metacat docid which is then used in the handleDelete() call. So now
Metacat supports use of arbitrary identifiers for delete operations, but...

Added support to ResourceHandler to allow the putObject method to use
arbitrary guid strings as input. These strings are examined, and if they
match the Metacat docid format (scope.id.rev), they are used directly. If
the id is a string in another format, a new localId is generated based on...

Updated MetacatRestClientTest so that the tests are actually calling fail()
when errors occur, and fixed all sixteen tests so that they run successfully
and can be run from any client (i.e., they don't depend on particular
documents being present in Metacat). The 'restfiles' directory can probably ...

Added initial support for arbitrary string identifiers in metacat (referred to as a guid). The new identifier table is used to map arbitrary string identifiers to Metacat's current docid format (referred to as the localId). Added a new IdentifierManager class to manage this table, adding new mappings as objects are added to the system. Modified the MetacatTest service to utilize this mapping table to look up a localId from a guid. IdentiferManagerTest is working with these guids now, as is the MetacatTest service get() method, but other parts of the system are unaware of them (e.g., create, update, delete operations are unaware, and no mapping is created when new documents are created). As a consequence, the MetacatRestClientTest is not working (although it also had lots of hardcoded dependencies that need to be fixed as well).

Merging in REST interface implementation that was created by Serhan Akin. Main change is
a refactored MetaCatServlet.java class, in which all of the handle* methods were moved
into a separate MetacatHandler.java class. This allows both the standard MetaCatServlet...

add delay in insertSpatialDocs test to avoid buildIndex conflict

Fix errors in workflow scheduler unit test

Beef up comments

Add access api test and supporting files

handle ben's change to the metacat client read api because it returns inputstream now

Change location of PropertyService to properties directory

Change MetaCatVersion to MetacatVersion

Fix references to db classes that were moved and refactoring missed.

Remove unneeded exception handling

Implement fix for Bug #4245: Harvester command line scripts don't execute.

Handle UtilException

Remove initialization of MetacatUtil.buildIndexPaths in test files. This is taken care of in the background now using SystemUtil.getIndexPaths()

The test was failing because it was reading the sitemap file into a buffer and the limit was being reached. Used the FileUtil string reader to get the file.

Create a propertyService.getTestInstance method to facilitate unit tests

Renamed MetaCatUtil to MetacatUtil

Renamed MetaCatUtil to MetacatUtil

Added EML 2.1.0 test cases.

Change Inline to be inline in the test eml. Added debug statements.

Insert documents with different permissions and make sure only the publically readable ones get pulled into the sitemap file.

Change getAccessBlock from private to protected so it can override the MCTestCase version

Stripped out common eml document creation elements and put into the MCTestCase base class

Add debug statements at the beginning of every test module.

Add EML 2.1.0 access scenarios

Add test cases for EML 2.1.0 documents. Add some generics typing.

Add test cases for EML 2.1.0 documents. Add some generics typing.

New test case to test xml schema registration.

Delete test document after test is through.

Convert remainder of tests that use PropertyService to extend the MCTestCase class

Convert remainder of tests that use PropertyService to extend the MCTestCase class

Add debug statements

Increase test cases to include testing read action which reads file from disk and squery which reads from db. Create separate cases for eml 2.0.1 and 2.1.0

Move common constants into MCTestCase base class

Add more debug statements

Add more debug statements

Make sure DatabaseService gets instantiated

Add test cases for eml 2.1.0 documents

Add debug statements

Add more PropertyService tests

Convert class to extend MCTestCase. Add debug statements.

Convert properties to camel case

qualify xml and eml properties with an xml. prefix

Continue to qualify property names

Initial addition of PropertyService test.

Qualify harvester properties

Add debug statements

Extend TestCase. Fix accountnum property getter.

Extend MCTestCase

Add verbose debug statements. These are toggled by the test.printdebug property in metacat.properties

Extend MCTestCase to handle initialization of PropertyService

Replace Options class with PropertyService and create PropertyService using log directory name instead of servlet context

Use qualified test properties

Merge 1.9 changes into Head

Check into cvs head. Modify some query string.

Check into cvs head. Add initialize option statment at the beginging of the class.

Check into cvs head. Add the statement to initialize option.

Check into cvs head. Move the initialize option statement to the begining of class.

Checkinto cvs head.Move the initialize option statement to the begining of class, since user name is using getting option.

Fixed syntax error: no ; at an end of import statement.

Changes to remove ANT tokens for the turnkey install project

Add code to test upload same identifier twice.

Remove commented test case.

Modified the test for nonlationcharacter.

Add a junit test for test AuthLdap. Currently we have getPrincipals test.

Add method to handle origianl data file error in IPCC eml document

Modify this class in order to correct data file name in some IPCC eml documents

Fixed the implement of java class which will upload ipcc data.

Add a file which will upload ipcc data to metacat.

In reuseSession and reuseInvalidSession method, metacat.logout statement were added to make sure it will use fresh Metacat object.

Add test cases to test combination of allow and deny rules. Modify the generate id method to make sure id is unique.

Add token to replace usr/password

Add code to initialize Options and some code clean up

Add code to initialize Options. Otherwise will get null exception.

Test file to see how long it will take to build records in xml_queryresult table.

Add a new test to test new query method with qformat.

Add more test (update) on upload

Delete a test for printAttributeQuery which was delete from java file.

Test file for query group.

A query client to test metacat performance

Added a new class called Sitemap that is used to generate a series of XML documents representing the URLs of metacat documents following the sitemap protocol. The Sitemap class extends TimerTask so that it can be scheduled to run once a day or so. New configuration options were added to metacat.properties to control where the sitemaps are written and hw often they are updated. By default we do it once a day, as more often is overkill for search engines....

Currently every MetacatClientTest will generate new doicd and the the docid will be reused. So it will generate problem. I add new method to persistent the doicd in a file and this problem was fixed.

The generateId method somethimes couldn't generate a unique id if you put them
into a big for loop. So i added append to a random number at the end. It works wll

Add delete method in inserting spatial data.

Add new method to keep inserting spatial data.

Fixed exception handler

Eliminated the 'release' ant tag from the rest of the files. The 'release' property is still used in build.xml for creating releases, but the filter is no longer presnt. Now, when updating the metacat files for a release, you have to set the release version in both the build.xml and the metacat.properties files.

fixed bugs in teh client that were preventing the lsid service from working right