Metacat

merging changes from branch

merging test changes into the trunk

fixed error where insert/update errors were not getting caught as exceptions

fixed bug with logger where localid didn't get appended when inserting a data file

fixed update bug I introduced yesterday while fixing replication

fixed identifier manager problem with getting guid for systememtadaa doc

updated for date format that supports time zones correctly.

changed date comparison to compare to gmt only

fixed bug in access control where the sessionid was not correctly passed along so changes of privileges were not being made

add back all tests

fixing date formatting and timezone issues

fixed some bugs in time handling for listObjects and getLogRecords

fixed bug in getLogRecords where the wrong id was getting set as the identifier

fixed listObject bugs, added params to the listObjects rest interface, consolidated the date format passed in params

fixed query for listObjects so that paging works as advertised.

fixed error with listObjects and get.

got the crud test to pass on knb-mn, now need to figure out why the rest service still isn't working

added a failure test to the testPublicAccess test. This test should allow public gets and listObjects but not public creates

changed getSessionData so that it will respond property to public tokens

test to check for public access to get and listObjects

MetacatPopulator is now working. It allows you to do a query from one metacat instance, then insert any returned docs into another metacat instance

tracked down streaming bug. now need to figure out a better way to fix it.

adding getlogrecords to the rest interface.

changed getLogRecords to use new classes for log events

fixed bug in metacat that allowed attribute data to be appended to element data in returnfields

implementing getLogRecords

made the test functional so that it checks that missing system metadata will be created.

working on getting systemmetadata creation working for legacy knb objects

working on a function to create dataone system metadata docs for legacy metacat objects that do not have SM.

moved authentication checking out of ResourceHandler and into CrudService

added a test for access control changes

refactored the sessionService to use a correct singleton initialization scheme. Added true authentication to ResourceHandler.

new class to handle system metadata tasks in metacat

listObjects is now working for rest calls as well as crud calls

finished the crud part of listObjects. need to implement it in the rest interface now.

listObjects is almost working. need to get the result set parsed when returned to CrudService.

setting up the framework for the listObjects api call

removed system.outs

update works. it was the test that was faulty. all working now

amost have update working. still need to get unit test squared away.

removed old method that didn't do anything

added exception testing to the crud test

getSystemMetadata is now working. added unit test as well.

getting getSystemMetadata to work

adding test for getSystemMetadata. a bit of refactoring.

adding test for getSystemMetadata. a bit of refactoring.

adding test for getSystemMetadata. a bit of refactoring.

refactored XMLSchemaService to not have static methods. made the CrudServiceTest more robust.

removed CrudService dependency on servlet params. CrudService is now a singleton. I'm getting an error from metacat saying it can't find teh systemmetadata schema, even though it is, in fact, registered with metacat. need to identify why this is happening.

added a test for CrudService and added tests for IdentifierManager for each method

Add a debug statement to show existing doc id

Merge 1.9.2 changes back into the trunk

Refactored putObject method to separate the create() and update() portions in order to match the method signatures needed for DataONE.

Modified ResourceHandler.deleteObject() to take a globally unique id (guid)
as input rather than a metacat-conformant docid. The guid is translated
into a metacat docid which is then used in the handleDelete() call. So now
Metacat supports use of arbitrary identifiers for delete operations, but...

Added support to ResourceHandler to allow the putObject method to use
arbitrary guid strings as input. These strings are examined, and if they
match the Metacat docid format (scope.id.rev), they are used directly. If
the id is a string in another format, a new localId is generated based on...

Updated MetacatRestClientTest so that the tests are actually calling fail()
when errors occur, and fixed all sixteen tests so that they run successfully
and can be run from any client (i.e., they don't depend on particular
documents being present in Metacat). The 'restfiles' directory can probably ...

Added initial support for arbitrary string identifiers in metacat (referred to as a guid). The new identifier table is used to map arbitrary string identifiers to Metacat's current docid format (referred to as the localId). Added a new IdentifierManager class to manage this table, adding new mappings as objects are added to the system. Modified the MetacatTest service to utilize this mapping table to look up a localId from a guid. IdentiferManagerTest is working with these guids now, as is the MetacatTest service get() method, but other parts of the system are unaware of them (e.g., create, update, delete operations are unaware, and no mapping is created when new documents are created). As a consequence, the MetacatRestClientTest is not working (although it also had lots of hardcoded dependencies that need to be fixed as well).

Merging in REST interface implementation that was created by Serhan Akin. Main change is
a refactored MetaCatServlet.java class, in which all of the handle* methods were moved
into a separate MetacatHandler.java class. This allows both the standard MetaCatServlet...

add delay in insertSpatialDocs test to avoid buildIndex conflict

Fix errors in workflow scheduler unit test

Beef up comments

add method to read test file from disk

Add access api test and supporting files

handle ben's change to the metacat client read api because it returns inputstream now

Create workflow scheduler test.

Change location of PropertyService to properties directory

Change MetaCatVersion to MetacatVersion

Fix references to db classes that were moved and refactoring missed.

Remove unneeded exception handling

Implement fix for Bug #4245: Harvester command line scripts don't execute.

Handle UtilException

Remove initialization of MetacatUtil.buildIndexPaths in test files. This is taken care of in the background now using SystemUtil.getIndexPaths()

The test was failing because it was reading the sitemap file into a buffer and the limit was being reached. Used the FileUtil string reader to get the file.

Create a propertyService.getTestInstance method to facilitate unit tests

Renamed MetaCatUtil to MetacatUtil

Renamed MetaCatUtil to MetacatUtil

Added EML 2.1.0 test cases.

Change Inline to be inline in the test eml. Added debug statements.

Pulled common eml creation and metacat client methods into the MCTestCase base class. Eventually, all test cases should use these common methods.

Insert documents with different permissions and make sure only the publically readable ones get pulled into the sitemap file.

Change getAccessBlock from private to protected so it can override the MCTestCase version

Stripped out common eml document creation elements and put into the MCTestCase base class

Add debug statements at the beginning of every test module.

Change info log messages to be debug.

Add EML 2.1.0 access scenarios

Add test cases for EML 2.1.0 documents. Add some generics typing.

Add test cases for EML 2.1.0 documents. Add some generics typing.

New test case to test xml schema registration.

Add common test case db select, query and update methods. Add http post method.

Added debug statements that tell which subtest is being run.

Delete test document after test is through.

Convert remainder of tests that use PropertyService to extend the MCTestCase class

Convert remainder of tests that use PropertyService to extend the MCTestCase class

Have test cases read properties from configured metacat.properties file.

Add debug statements

Increase test cases to include testing read action which reads file from disk and squery which reads from db. Create separate cases for eml 2.0.1 and 2.1.0

Move common constants into MCTestCase base class

Add more debug statements

Add more debug statements

Make sure DatabaseService gets instantiated