First pass at MN.getPackage() implementation using Bagit library from LOC. https://projects.ecoinformatics.org/ecoinfo/issues/6026
add method for publishing existing object (usually assumed to be scimeta) with a DOI. https://projects.ecoinformatics.org/ecoinfo/issues/6014
add Metacat servlet action to force the reindexing of one or more or all pids in the system. https://projects.ecoinformatics.org/ecoinfo/issues/5945
add simple test for the IndexEventDAO class -- adding, removing, listing events in the DB table. https://projects.ecoinformatics.org/ecoinfo/issues/5944
correct regex for whitespace in D1 identifier.
Add code to test title for the query result.
Rewrite some methods, so the query result can be processed many times.
Removed the commented out text cases and add a test for archvied document.
Call setting certificate location to be the test one after getting the MN baseurl.The method to getting MN baseurl somehow calls CN and it set the certificate location to be /var/metacat/certs/METACAT1.pem.
Use the MNode to query the server when we use certificates to set up the session.
Add the code to test the user with a distrusted certificate.
Add tests to test group and rightsholder.
Change the delete to archive.
Add a test for testing access control for the solr query.
use maven to manage most jar dependencies in Metacat.Exceptions include: LSID, Datamamager (EML),
lookup the title for EML files when registering DOIs.lookup the creator from DataONE CN (if available).add EML-based test. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
include the create test in the suite
Correctly mint and register DOIs in teh MN API implementation. Add tests to exercise minting and creating. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
remove older lucene library and include ORE test to make sure that change does not prevent us from generating OREs. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5874
move DocInfo parsing into utilities project so that it can be used by Morpho as well as Metacat.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5737
return from test when we encounter the NotImplemented exception for CN.search()
include identifier.guid in the test SQL clause.
CN.search() id not implemented by metacat -- making that explicit and also testing for it.
In migrating to Hazelcast 2.4.x, replace deprecated methods.
simplify the xml_access query, and instead use guid to check for permission. Now the docid/rev join (to get most recent version for search results) happens "higher up" in the query.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5696
remove use of HttpMessage (in morpho.jar) in favor of standard httpclient methods for calling the servlet in tests
use CDATA for docname field in docInfo so that XML parser ignores the content that can contain characters like "&
sleep before updating and deleting test documents - otherwise their index entries may not be fully written and this causes errors (update and delete first attempt to remove index references, but if they are not in the DB yet then they are not removed but then they do get added and the FK constraints make the delete fail). Since we know indexing occurs in a separate thread with a configured delay, we just use this same delay in our testing.
Use a final static string to replace the hard code.Search document title rather than id in testReplicateEML_AtoB method.
use CN session when testing getLogRecords() and getOperationStatistics() becuase they are now protecting "sensitive" information
test for running concurrent Metacat queries to mimic Kepler data search.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5518
include testSynchronizationFailed() and call as the CN subject so that it is authorized.
use MN (self) as the Session.subject so that the MN.delete() call is successful.
comment out testDelete because it requires acting as the MN comment out testSynchronizationFailed because it requires acting as the CN
uncomment the MN tests (I bet this was an oversight during local testing)
no not record EML access rules that use the "denyFirst" permOrder.https://redmine.dataone.org/issues/2614
change ordering of getLogRecords() parameter -- pidFilter is in the middle now
upgrade to latest RC in libclient and common jars -- includes updated getLogRecords and new mn.generateIdentifier method
Add testIsEquivIdentityAuthorized() to ensure that [MN|CN].isAuthorized() is authorizing equivalent identities correctly. Note: Using TypeMarshaller.marshalTypeToOutputStream(type, System.out) to serialize an object seems to jack up output to stdout - not sure why.
refactor D1-specific upgrade utilities into their own package
test harness for running system metadata generation outside of the upgrade process
include comment about KNB estimated time to run during upgrade:Total time: 20 minutes 58 seconds
use "test" to exercise upgrade code on staging DB.
Update the MNodeServiceTest to test the validity of the node document returned by getCapabilities() by parsing it with the TypeMarshaller.
use RC-1 Dataone jars
remove method: assertRelationhttps://redmine.dataone.org/issues/2158
Use a Date with resolution to milliseconds.
include the EML and data tests in the suite
debugging data locking test
cannot check for deleted data since it is forever available (archived)
defer to super class member variables
do not include the "v1" in the base url for the target MN
update tests to comply with these chenages:new jars with many changes -- including new CN methods: ping, describe, listChecksumAlgorithm. Removed MN.setAccessPolicy. Refactored CN.setOwner() to CN.setRightsHolder().
for test to compile, provide BaseException param for setReplicationStatus. I used a NotAuthorized instance.
adjust after refactoring tests that use EML queries
query for deleted metadata when testing that replication communicated the deletion. to check data, we try to update the data object on the target node (which should fail)
add test for data locking
delete data and eml on the home Metacat and check that the change propagates to the target
actually include the test in the suitehttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
EML replication test with insert, update and set accesshttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
test update and set access during replication from A->Bhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
a minute for replication?
comment out B->A testhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
use correct URLs for replication/Metacat client
simple tests for 2-way data replicationhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
fix tests:-insert default objectFormatList from d1_common (includes schemaLocation now)-calculate checksum for the system metadata using the ChecksumUtil in d1_common
prepared statement toString() does not include quotes (') around the inserted values -- now the test reflects this.
Metacat now keeps track of permissions on a per-version basis -- the test reflects this change in behavior.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
refactor Metacat access handling to be on a per-revision basis so that it more closely aligns with the DataONE approachhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
update test to reflect newer change:handle queries with predicates correctly.when docids are used in the return field look up, we need to make sure they are included in the values in the correct order for their corresponding parameter place holders (?)
Add new test method to test getAccessControl.
catch all possible exceptions
act as a registered CN when calling CN methods -- create(), for example, is restricted to only be callable by a node of type CN.
use IOUtils for testing read/write of XML strings. This goes along with the utilities project change to use the same apache commons IO library. Be sure to clean the utilities checkout in order to catch the right utilities svn tag when building!
when comparing D1 Subject objects, use the equals() method not direct string comparisonhttps://redmine.dataone.org/issues/2050
upgrade to 1.0.1-SNAPSHOT DataONE jars
started replication unit test
MockCNode.getSystemMetadata() no longer throws InvalidRequest.
remove catch blocks for unthrown exceptions
uses prepared statement instead of plain old statement.deprecated the DBConnection.createStatement() method to discourage direct parameter value use in favor of parameter binding.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5527
Add a test for systemMetadataChanged. This should be fleshed out more so that the test uses a CN certificate.
uses prepared statement parameter binding for querieshttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5527
check object format id values since they are not Comparable objects
make MNodeServiceTest pass JUnit testing
Update CNodeService test to include serialVersion in it's calls as appropriate.
restore -- apparently this was used with reflection in a test...
MN.setAccessPolicy() is deprecated, commenting out the test.
removing non-junit file from the test area
load hazelcast test files from the classpath rather than from rob's personal directory.
SystemMetadataManager's functionality is handled by IdentifierManager. Removing it and it's test.
MetadataTypeRegister is now replaced by ObjectFormatService. Removing it and it's test.
move the DataONE 1.0.0-SNAPSHOT
add User-Agent logging to support D1 requirements
remove old RestServlet handler -- not used now
including newer d1 libclient that uses Foresite (and Jena) to construct/parse ORE resource maps for DataONE
update D1 jars to include recent SubjectList -> SubjectInfo refactoring and the SUBJECT_PUBLIC constant
use an actual data object (bytes of "test") when generating system metadata so that the checksum is a valid checksum
test relationship assertion using obsoletes
move bulk of the Hazelcast code into HazelcastService from CNodeService so that it is centrall located - easier to manage and configure
cleaned up mock tests on hzObjectPathMap. split out code for mocking a datastore into MockObjectPathMap.