Metacat

fixed compile errors

uncommented tests

fixes for creating SM for legacy docs

uncommenting tests

use detected document encoding or Metacat's default encoding (UTF-8)

include shared method in superclass

create another test for various i18n features including eml 2.1.1
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2495

uncomment the other test cases and make sure we do the clean up when the tests are complete (delete the uploaded documents)

use detected XML encoding when reading/writing files
use UTF-8 as default when performing queries in the DB (assume DB is using UTF-8)
remove as many PrintWriters (uses system default character encoding only) as possible and construct OutputStreamWriters where explicit encoding can be given....

fix for paths with semi-colons or other 'reserved' characters in them for D1 rest services

correct the prolog

changed test to use actual semi-colons instead of colons

add XmlStreamReader test for determining encoding

added semi-colon id test

found a failure when using an InputStreamReader without an encoding

a test to explore character encoding with utf8 chars

support EML 2.1.1

include anonymous parameter when getting report

add support for EML 2.1.1

organized code for inputstream handling

removed dependency on InputStreamToOutputStream so that exceptions will be passed correctly.

changes for new d1 schemas

uncommenting tests

implemented crud.delete

implemented crud.describe

removing backup files

got the streaming mime multipart working

still working on mmp stream parsing

working on integrating streaming mmp into resourceHandler

more work on streaming mmp support

getting closer to a non-memory bound solution for mime multipart de/encoding

fixed a couple bugs with dates and fixed a major bug where metacat was reading the entire document from the database everytime a DocumentImpl instance was created even though it didn't need to

fixed a bunch of small errors, did some reformatting, and fixed a bug that I thought was fixed last week

minor changes to crudservicetest

adding a test that I forgot to check in a while back

test for the profiler

added notes on packages to upload with knb-mn

updated the metacatpopulator to use the d1 eml parser to create system metadata in a smarter fashion.

print the workflow server name

merging changes from branch

merging test changes into the trunk

fixed error where insert/update errors were not getting caught as exceptions

fixed bug with logger where localid didn't get appended when inserting a data file

fixed update bug I introduced yesterday while fixing replication

fixed identifier manager problem with getting guid for systememtadaa doc

reverting accidental cahgnes

fixing another null auth token bug

updated for date format that supports time zones correctly.

changed date comparison to compare to gmt only

fixed bug in access control where the sessionid was not correctly passed along so changes of privileges were not being made

add back all tests

fixing date formatting and timezone issues

fixed some bugs in time handling for listObjects and getLogRecords

fixed bug in getLogRecords where the wrong id was getting set as the identifier

fixed listObject bugs, added params to the listObjects rest interface, consolidated the date format passed in params

fixed query for listObjects so that paging works as advertised.

fixed error with listObjects and get.

got the crud test to pass on knb-mn, now need to figure out why the rest service still isn't working

added a failure test to the testPublicAccess test. This test should allow public gets and listObjects but not public creates

changed getSessionData so that it will respond property to public tokens

test to check for public access to get and listObjects

MetacatPopulator is now working. It allows you to do a query from one metacat instance, then insert any returned docs into another metacat instance

tracked down streaming bug. now need to figure out a better way to fix it.

adding getlogrecords to the rest interface.

changed getLogRecords to use new classes for log events

fixed bug in metacat that allowed attribute data to be appended to element data in returnfields

implementing getLogRecords

made the test functional so that it checks that missing system metadata will be created.

working on getting systemmetadata creation working for legacy knb objects

working on a function to create dataone system metadata docs for legacy metacat objects that do not have SM.

moved authentication checking out of ResourceHandler and into CrudService

added a test for access control changes

refactored the sessionService to use a correct singleton initialization scheme. Added true authentication to ResourceHandler.

new class to handle system metadata tasks in metacat

listObjects is now working for rest calls as well as crud calls

finished the crud part of listObjects. need to implement it in the rest interface now.

listObjects is almost working. need to get the result set parsed when returned to CrudService.

setting up the framework for the listObjects api call

removed system.outs

update works. it was the test that was faulty. all working now

amost have update working. still need to get unit test squared away.

removed old method that didn't do anything

added exception testing to the crud test

getSystemMetadata is now working. added unit test as well.

getting getSystemMetadata to work

adding test for getSystemMetadata. a bit of refactoring.

adding test for getSystemMetadata. a bit of refactoring.

adding test for getSystemMetadata. a bit of refactoring.

refactored XMLSchemaService to not have static methods. made the CrudServiceTest more robust.

removed CrudService dependency on servlet params. CrudService is now a singleton. I'm getting an error from metacat saying it can't find teh systemmetadata schema, even though it is, in fact, registered with metacat. need to identify why this is happening.

added a test for CrudService and added tests for IdentifierManager for each method

Add a debug statement to show existing doc id

Merge 1.9.2 changes back into the trunk

Refactored putObject method to separate the create() and update() portions in order to match the method signatures needed for DataONE.

Modified ResourceHandler.deleteObject() to take a globally unique id (guid)
as input rather than a metacat-conformant docid. The guid is translated
into a metacat docid which is then used in the handleDelete() call. So now
Metacat supports use of arbitrary identifiers for delete operations, but...

Added support to ResourceHandler to allow the putObject method to use
arbitrary guid strings as input. These strings are examined, and if they
match the Metacat docid format (scope.id.rev), they are used directly. If
the id is a string in another format, a new localId is generated based on...

Updated MetacatRestClientTest so that the tests are actually calling fail()
when errors occur, and fixed all sixteen tests so that they run successfully
and can be run from any client (i.e., they don't depend on particular
documents being present in Metacat). The 'restfiles' directory can probably ...

Added initial support for arbitrary string identifiers in metacat (referred to as a guid). The new identifier table is used to map arbitrary string identifiers to Metacat's current docid format (referred to as the localId). Added a new IdentifierManager class to manage this table, adding new mappings as objects are added to the system. Modified the MetacatTest service to utilize this mapping table to look up a localId from a guid. IdentiferManagerTest is working with these guids now, as is the MetacatTest service get() method, but other parts of the system are unaware of them (e.g., create, update, delete operations are unaware, and no mapping is created when new documents are created). As a consequence, the MetacatRestClientTest is not working (although it also had lots of hardcoded dependencies that need to be fixed as well).

Merging in REST interface implementation that was created by Serhan Akin. Main change is
a refactored MetaCatServlet.java class, in which all of the handle* methods were moved
into a separate MetacatHandler.java class. This allows both the standard MetaCatServlet...