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# Date Author Comment
2076 03/30/2004 01:35 PM Matt Jones

Excluded the update of the xml_index table in insert,update, and delete if the usexmlindex option is set to false.

2075 03/30/2004 10:09 AM Matt Jones

Reformatted DBQuery.java for readability and consistency.

2074 03/30/2004 10:02 AM Matt Jones

Changed printAttributeQuery() to no longer depend on the xml_index table. Now, if useXMLIndex is false, the method will use a recursive query on xml_nodes to match paths instead of using xml_index.

2073 03/29/2004 03:50 PM Matt Jones

Some refactoring of the printExtendedSQL()
methods to eliminate redundancy in the code and
to provide more readable documentation.

2072 03/29/2004 01:59 PM Matt Jones

Moved decision about whether to use xml_index for
query to the metacat.properties as "usexmlindex". Default
is now false. Still have some refactoring to do to remove a
few more uses of the xml_index table.

2071 03/29/2004 11:39 AM Matt Jones

Replaced properties file that I accidentally overwrote. Reverting to 1.3.

2070 03/29/2004 11:36 AM Matt Jones

Removed unused references to abstractpath, and some unudes javascript.

2069 03/29/2004 11:24 AM Matt Jones

Created new printExtendedSQL function that can get the extended
return fields using only xml_nodes and not xml_index. One
step closer to eliminating the dependence ofn xml_index.

2068 03/26/2004 05:40 PM Matt Jones

Created test class QuerySpecificationTest and started process of removing the xml_index from the QuerySpecification code. Reformatted some classes for readability.

2067 03/26/2004 03:25 PM Matt Jones

Removed the "getdataguide" action as it was always experimental and is no longer used in metacat or morpho.

2066 03/26/2004 02:47 PM Matt Jones

removed the 3 versions of printPackageSQL which are no longer used by metacat. This eliminates some dependency on xml_index.

2065 03/26/2004 02:42 PM Duane Costa

Harvester properties file

2064 03/26/2004 02:38 PM Duane Costa

Login page for Harvester Registration Servlet

2063 03/26/2004 02:36 PM Duane Costa

Implement Harvester Registration Servlet

2062 03/26/2004 02:35 PM Duane Costa

Additional scheduling logic

2061 03/25/2004 12:57 PM Duane Costa

Changes to Harvester properties

2060 03/25/2004 12:56 PM Duane Costa

Changes to log entries

2059 03/24/2004 09:21 AM Duane Costa

Changes to harvester targets

2058 03/23/2004 10:26 AM sgarg

Made changes in these three files so that getPrincipal returns back more details about users and groups. Users now contain userDN, user Name and user Email. Groups now contain Group name and Group description. So some function calls which returned single string array earlier now returns multiple string arrays. AuthSession.java called one of these functions - so accordingly changes were made to fix that part of the code.

2057 03/22/2004 10:37 AM sgarg

Fixed a bug which doesn't occur everytime. The bug occurs when lastid in (cfg).lastid is not unique. i.e. there is already a document in the server which has same docid. The earlier algorithm was:

while(not unique){
get accession number;
update accession number written in document; (BUG)...

2056 03/22/2004 08:43 AM sgarg

Added extra parameters (cfg & docid) to be passed on to generic response screen.

2055 03/19/2004 01:52 PM Matt Jones

Set new URL for the NCEAS registry home. I forgot to commit this earlier.

2054 03/17/2004 03:47 PM sgarg

Made changes so that *.gif and *.png are copied without filtering.

2053 03/17/2004 03:14 PM sgarg

Debug level was changed and a few extra lines were added in last commit.
Restored those to previous values.

2052 03/17/2004 03:04 PM sgarg

Added target for installing skins. Target name is install-skin. It is dependent on init. It take skin name as input from user, creates a directory in skins directory and copies files to that directory.

2051 03/17/2004 10:52 AM brooke

removed sid's space and added a >> before titles, so datasets with no title will still have a clickable link on results listings. Sid's space was not visible unless the user did a mouse-over

2050 03/17/2004 10:06 AM brooke

added sessionid hidden fields, based on $sessid transformer parameter set by DBTransform.java

2049 03/16/2004 06:57 PM sgarg

made changes so that organization name for the site or project is entered before
any other creater.

2048 03/16/2004 06:21 PM sgarg

Added space at the end of title that is returned back. This is done so that documents with no title can be clicked on.

2047 03/16/2004 06:02 PM sgarg

Made changes in entryForm.tmpl so that it shows site list for specnet skin.

2046 03/16/2004 06:00 PM sgarg

Adding registry skin for SpecNet.

2045 03/15/2004 02:08 PM Jing Tao

Fixed the bug for sessionid storing, revision couldn't be zero and Ldap DN is case sensitive.

2044 03/15/2004 11:45 AM Jing Tao

In test client package, get rid of HttpClient in parameter. Because, http client has cookies and we couldn't test session id.

2043 03/09/2004 06:18 PM sgarg

Replaced Hash table with Vector of Vector datastructure in getting <param> from Query. This was done so that the results are represented in same order as they appeared in the document.

2042 03/09/2004 03:59 PM sgarg

fixed a bug in reloading of kewords from an eml file for edit-datapackage form.

2041 03/09/2004 02:28 PM sgarg

Made changes in the formatting display of Project list.

2040 03/08/2004 07:37 PM sgarg

Fixed a bug in sorting of records. Now the result sent back is title sorted.

2039 03/08/2004 06:07 PM Jing Tao

Fixed bug that version could not be zero in replication.

2038 03/06/2004 11:51 PM Matt Jones

Minor changes to allow the registry to work in the knb skin, mainly in
how to treat the 'site' field. Now it is a free-text organization
field in the KNB skin. Need to test, install this on ecoinfo and link it
into the KNB web pages.

2037 02/27/2004 03:21 PM sgarg

Added subroutine for replacing characters that might create problem in HTML.
Specifically written for "being used in any text field. This create a
problem in confirmData template, when you specify input name value pair with value
having a " in it.

2036 02/27/2004 12:49 PM Duane Costa

Additional Harvester development

2035 02/27/2004 11:56 AM sgarg

Fixed a small bug.

2034 02/27/2004 09:21 AM sgarg

Fix enter for bug 1306.

2033 02/20/2004 05:43 PM sgarg

Fix for bug 1325. new javascript function added.

2032 02/20/2004 04:45 PM sgarg

Made changes so that & and other characters dont mess up the url that is passed to metacat.

2031 02/20/2004 02:42 PM Duane Costa

Additional development of Harvester implementation

2030 02/18/2004 11:24 PM Matt Jones

Added a new OBFS site to the list of sites. Information provided by Stromberg.

2029 02/11/2004 01:08 PM sgarg

Mixed a bug reported by Rick and Dan. The form inserted a organizationName tag with no value. This happened only in NCEAS as the tag was included from the drop down site list which doesnot exsist in NCEAS version. Hence, a empty tag was inserted in the eml document.

2028 02/10/2004 06:13 PM sgarg

Bug 1301 - changes made for a repeatable add keyword button

2027 02/10/2004 06:11 PM sgarg

Bug 1301 - changes made for a repeatable add keyword button.

2026 02/10/2004 09:54 AM sgarg

Made changes to fix bug# 1300: 1,2,3,4

2025 02/10/2004 09:45 AM sgarg

Made text changes mentioned in bug# 1308

2024 02/10/2004 09:37 AM sgarg

Made changes to fix bug# 1326. The templateVar are now passed on to the responseTemplate also in case of error - so that it can show a link which will send all the values back to register-dataset.

2023 02/10/2004 09:29 AM sgarg

Changes made to fix bug# 1326. There is a link which call register-dataset.cgi with all the inputs such as that resgiter-dataset calls reEnterDataSet

2022 02/09/2004 03:10 PM Duane Costa

Harvester source files

2021 02/05/2004 08:19 PM sgarg

Deleting .project file that was added by mistake by Eclipse (and me).

2020 02/05/2004 08:17 PM sgarg

Comments and notes on registry by Rick Reeves and Andrea Chadden. I have annotated it with bug #s and comments.

2019 02/05/2004 07:32 PM sgarg

Made changes to fix Bug 1311 1)

2018 02/05/2004 07:25 PM sgarg

Added docid in edit form - Bug 1304

2017 02/05/2004 07:05 PM sgarg

Added a view button as mentioned in bug 1304.

2016 02/05/2004 05:12 PM sgarg

Made some hanges mentioned in bug 1297.

2015 02/05/2004 04:36 PM sgarg

Did editing to support changes mentioned in bug 1295

2014 02/05/2004 04:35 PM sgarg

Made changes mentioned in Bug 1295.

2013 02/05/2004 03:24 PM sgarg

deletaData.tmpl added a space in the end of docid. This led to an error while deleteing. This error was pointed out by Rick in his document.

2012 01/30/2004 02:56 PM Chris Jones

Adding in a web.xml file specific to tomcat 5. Notice servlet.jar is
now servlet-api.jar

The tomcat 5 release notes includes this:

------------------------
Enabling invoker servlet:
------------------------

Starting with Tomcat 4.1.12, the invoker servlet is no longer available by...

2011 01/30/2004 12:44 PM Chris Jones

In order to use tomcat five, a couple of changes in web.xml need to take place.
I'm adding in web.xml.tomcat5 as a choice with the changes.

2010 01/14/2004 01:20 PM blankman

deleted versions 22 and r2a to avoid confusion and duplication.

2009 01/14/2004 01:08 PM Duane Costa

Revisions to Harvester Class Diagram and Harvester Class Descriptions.

2008 01/14/2004 09:14 AM blankman

Resubmitted as binary. Modification of the Harvester database ER diagram. Includes foreign key added to the XML_DOCUMENTS table from the SITE_SCHEDULE table

2007 01/14/2004 08:58 AM blankman

Resubmitted as binary. Modification of the Harvester database ER diagram. Includes foreign key added to the XML_DOCUMENTS table from the SITE_SCHEDULE table

2006 01/13/2004 09:20 AM blankman

Modification of the Harvester database ER diagram. Includes foreign key added to the XML_DOCUMENTS table from the SITE_SCHEDULE table

2005 01/12/2004 06:37 PM Matt Jones

Fixed hardcoded admin account so that it works with more than just OBFS
Registry.

2004 01/12/2004 05:51 PM Matt Jones

New site list for NRS reserves in the confgiruation file from K Browne.

2003 01/12/2004 05:44 PM Matt Jones

Fixed registry bug involving a string comparison (used numeric
equality instead of string equality).

2001 01/09/2004 01:08 AM Matt Jones

Adjusted the text on the NCEAS repository page. Changed the project list
so that it now displays short title but uses the long title in the
entry. This was doen because the long titles were far too long to display
decently in the list (the box scrolled way off the right of the page).

2000 01/08/2004 06:57 PM Matt Jones

Removed unneeded Net::LDAP dependency. Now all authentication occurs
indirectly through Metacat.

1999 01/08/2004 06:48 PM Matt Jones

Added skin for the UCNRS data registry based on earlier work. Minor
modifications to the templates to accomodate this. Fixed a validation
bug in the register-dataset.cgi, and removed an unnecessary Net::LDAP
login as well because the authentication is handled by metacat.

1998 01/08/2004 09:21 AM Matt Jones

Restoring AuthLdap to previous search filter. Determined that the problem was
a missing o: attribute in the UCNRS LDAP directory. Adding it in makes the old
method work. The change I had made caused some confusion about authentication
because using just uid for a filter caused too many return dn's, and it was just...

1997 01/08/2004 08:31 AM Matt Jones

Fixed validation check for samplingDescription.

1996 01/07/2004 07:08 PM Matt Jones

Another eml.jar version with the appropriate config.xml in place.

1995 01/07/2004 06:13 PM Matt Jones

New eml.jar that includes the parser bug fix against eml-2.0.0 schemas.

1994 01/07/2004 06:04 PM Matt Jones

Changed label for NCEAS project group list on the web form.

1993 01/07/2004 03:13 PM Matt Jones

Changes to re-enable the nceas admindb access for the production install.

1992 01/07/2004 11:07 AM Matt Jones

Removed some debugging test code that isn't needed.

1991 01/07/2004 11:02 AM Matt Jones

Revised the registry guide to include descriptions of the new fields, and
made some minor formatting changes.

1990 01/06/2004 06:42 PM Matt Jones

Changing version in build in preparation for a release.

1989 01/06/2004 06:41 PM Matt Jones

Added studyExtent and samplingDescription fields to the registry to accomodate
Sandy's request for a temporalDescription field. This is a little more than
she wanted, but it was needed to satisfy EML minimum requirements.

1988 01/06/2004 06:18 PM Matt Jones

Modified LDAP authentication to support a lookup for the NRS system. If
the auth on the provided string fails as a DN, try to look up a new
DN based on the UID. If we get a match, use that DN for auth and see
if that works. This allows us to use a referral within the...

1987 01/06/2004 05:40 PM Jing Tao

Update result set from relation to trip.

1986 12/30/2003 09:56 AM Matt Jones

Removed obsolete SRB support files that are no longer used.

1985 12/29/2003 01:57 PM Matt Jones

Added taxonomic coverage and authority fields, and fixed a bug in reentry
with the methods fields. Now we are collecting information on all of the
additional fields Sandy requested except for a general temporal description,
which doesn't fit neatly in EML. Will need to consider how to accomodate...

1984 12/23/2003 06:22 PM Matt Jones

Added the ability to describe taxonomicCoverage to the registry. This
allows an arbitrary number of species or other taxa to be listed, and the
editing form can dynamically grow through a simple javascript approach
(also used in Methods). Need to test thoroughly, and need to test on...

1983 12/23/2003 12:15 PM Matt Jones

Added geographic description to the fields of data collected, as it is
a required field and was being improperly defaulted to an empty string in the
XML document. This is a new field for all registries.

1982 12/23/2003 11:27 AM Matt Jones

Modifications to add "Methods" collection to the data registry, and to
make the forms HTML 4.0.1 valid (in an attempt to figure out some of
the rendering and layout oddities I'm seeing).

1981 12/23/2003 10:13 AM Matt Jones

Changed "Document ID" to "ID" which is mroe appropriate for data packages.

1980 12/19/2003 04:49 PM Matt Jones

New formatting and text for the NCEAS data registry.

1979 12/19/2003 04:12 PM Matt Jones

Further changes to the registry scripts to support the NCEAS registry
with access to the project list fromthe admindb. Also, fixed a bug with
the script where creators were getting duplicated in the editing process
accidentally.

1978 12/19/2003 11:50 AM Matt Jones

Configuration file for NCEAS registry.

1977 12/18/2003 05:08 PM Matt Jones

Modifications that allow working group entries to be put in as creators, and
a whole bunch of re-formatting for horribly formatted code that I need to
read to finish this thing up.

1976 12/18/2003 05:03 PM Matt Jones

Adding style files for the new NCEAS skin for metacat, which includes
files needed for the NCEAS data repository.