Metacat

Format and add comments.

Beef up comments

add method to read test file from disk

add getaccesscontrol and setaccess api calls

Add access api test and supporting files

handle ben's change to the metacat client read api because it returns inputstream now

Handle the case of trying to insert a conflicting permission order for a document

move dbconnection object out of base class and create it for each db access so it can be released

Add success message to metacat response for setaccess action

add id attributes for form elements (in case IE6 needed them) but it appears they are not required

add the "value" attribute for metadata tag downloads

handle multiple <principal> elements in the allow/deny blocks

Verify we are in the permission and principal sections before setting values on dao object.

add code block (commented out) to use in case "?column?" headers become an issue.

handle repeating "?column?" headers - somewhat naively, but consistent

Use OR to add permissions, not AND

Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.

change AccessControlForSingleFile to only be instantiated for one file. move ACL methods to AccessControlForSingleFile. Change format of access sections returned to EML 2.1.0.

change location of accesscontrolinterface

Removed some old commented out code

Remove unneeded references to Timer

SMS-related addition: retrieve docids for a given doctype

QueryTerm.java will produce an incorrect SQL statement when there is an attribute in the XPath being used to search on. Regardless of the presence of the attribute, the clause:

(SELECT nodeid FROM xml_index WHERE path LIKE " + "'" + path + "') "

would be added to the query....

Create access dao and centralized db access classes. Update create access code to combine access records for principal/doc/accesstype when multiple exist.

Move access control source to it's own directory.

Move access control source to it's own directory.

Create workflow access pages

correct the metadata matrix for "transposed" data download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4452

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

include at least one metadata field and then include any that are additional (_2, _3....etc)
bug #4452

Add ability for doc owner to add user access to workflows.

allow user to specify the data columns included for the transpose data set (score, response, response file).
decided in today's CC

Only allow workflows with kars that have user write permissions to be scheduled.

Add authorization check before scheduling a job in the workflow scheduler

Change RequestUtil forwardRequest() method to throw MetacatUtilException.

Include the authorization service stub jars in workflow scheduler build

Change RequestUtil forwardRequest() method to throw MetacatUtilException.

submit a form into a div via ajax using either form id or form object

move worflow page sections from common into the sanparks skin files

Remove commented out sections

Add authorization functionality

Change sanparks skin to log in with browser session instead of metacat client session so session can be validated on other pages.

Add user name to SessionData object

use arguments for the main() method - hardcoded URLs and test docids are poor form

choices for metadata tags to include:
1-10, increments of 1; 11-50 increments of 10

add "responsefile" column as data in the transpose
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

return InputStream instead of Reader in the MetacatClient read() and readInlineData() methods. Can now handle binary data
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4432

include input selection for the number of metadata fields to download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

include more than just the first metadata field for questions
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

include download link instead of an ecogrid pointer
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

include ecogrid link to the external file in downloaded data

do not search across items when simply "browsing all"

comment out a debugging alert() call

use keyword field for both assessments and assessment items
remove unused query options that were in place for the mock up UI
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387

search across items as well as assessments
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387
note: you can switch this feature off using the checkbox provided in the search form. the search can be slow otherwise

Add session validation to metacat tpc and workflow scheduler. Fix sanparks skin session management so it always uses the logged in session id.

Make some error messages more understandable

change to DM that preserve the order of the attributes being selected

include latest datamanager changes - notably the performance enhancement regarding attributes and table creation

add performance debugging statements for dataquery action

do not use the jdk logging - this was being used with the datamanager for some reason (but not the rest of metacat).
we use log4j...

change utilities tag property to include "tag/" so that it can be changed from an explicit tag to "trunk" if needed.

Build against utilities trunk until release time

Add code from Bill Baker, which uses certficate to login metacat.

remove web directory

Remove the recently created metacat web servlet

Create workflow scheduler test.

change name of workflowjobid parameter to be workflowjobname which is more accurate

change name of workflowjobid parameter to be workflowjobname which is more accurate

change pw.println to print to remove newline at end of url

Add unshedulejob to base class

Add session Validation action and session timeout functionality.

Fix spelling in debug statement

Added workflow scheduler directory with supporting files

remove base dir definitions from configuration

point workflow requests to the new workflow servlet.

Move workflow scheduler lib files into their own directory

Change location of PropertyService to properties directory

Create workflow scheduler build

Make properties handlers implement an interface so you can use configurable or non-configurable properties.

Remove metacat web servlet that was added last week

Change location of PropertyService to properties directory

Change location of PropertyService to properties directory

Add Content_type line so debug prints

Persist skin properties across installations

Change MetaCatVersion to MetacatVersion

Rename MetaCat to Metacat

Move document specific utilities to DocumentUtil from MetacatUtil. This makes it easier to define a layer between the core metacat services and the rest of the code.

includes ability to select null attributes for unions

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Remove import of deleted class

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Add documentation files to the 'docs/dev/oaipmh' directory. * Delete two obsolete files. * Modify class description comment in MetacatRecordFactory.java

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair. * Terminate harvest if login failed. * Add runHarvester.sh shell script

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair.

fixes for first installation

Updated comments to more accurately reflect the API

include first as an available skin

Fix references to db classes that were moved and refactoring missed.

Create database and shared directories for database management code and shared code respectively.