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# Date Author Comment
5168 12/18/2009 01:39 PM daigle

log connection warnings only when thresholds are exceeded. Add method names to log output

5167 12/18/2009 01:37 PM daigle

add method name to log statements

5166 12/18/2009 01:36 PM daigle

fix spelling of word additional

5165 12/18/2009 01:26 PM daigle

add method name to log messages and create configured thresholds for warning messages

5164 12/18/2009 01:22 PM daigle

add parc-moderators to config.username

5163 12/10/2009 12:59 PM Chris Jones

I've added the PARC and PISCO organizations to the delete and confirm form templates for the data registry application.

5162 12/09/2009 11:54 AM daigle

Change log levels where appropriate and add class/method name to output.

5161 12/09/2009 11:01 AM daigle

Change warn messages to info

5160 12/08/2009 11:40 AM daigle

beef up error log messages

5159 12/08/2009 11:39 AM daigle

Make sure session data exists before extracting information

5158 12/08/2009 11:39 AM daigle

Separate code to do tls and non-tls authentication. Introduce AuthTLSException to make error handling easier.

5157 12/08/2009 10:20 AM daigle

Beefed up the logging

5155 12/08/2009 09:23 AM daigle

remove registry.config.username value

5154 12/07/2009 04:03 PM daigle

Start to flesh out the eclipse metacat setup document

5153 12/07/2009 04:01 PM daigle

Create some basic workflow scheduler system installation documents

5152 12/03/2009 03:12 PM daigle

When comparing lat and long ranges, make sure the values have content first. Perl values with no content = 0.

5151 12/02/2009 04:00 PM daigle

Change add sql to use a prepared statement. Only try to download a cert if a url was provided.

5150 12/02/2009 03:59 PM daigle

change unregister error message to be an info message

5149 12/02/2009 12:45 PM walbridge

fix file name reference for skin configuration file

5148 12/02/2009 10:40 AM daigle

added a commented out line for auth.moderators for the parc system. This will get uncommented on the parc system and the existing auth.moderators will be commented out.

5147 12/02/2009 07:22 AM Chris Jones

I've removed the value for the PARC registry.config.site property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.

5146 12/01/2009 10:15 AM daigle

hard code parc home url

5145 12/01/2009 10:03 AM daigle

Redirect data.palmyraresearch.org to parc skin

5144 11/30/2009 11:08 AM Chris Jones

I've added the PARC organization to the login form template.

5143 11/30/2009 11:02 AM Chris Jones

I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.

5142 11/30/2009 09:58 AM Chris Jones

This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.

5141 11/25/2009 10:40 AM daigle

added parc to list of available skins.

5139 11/24/2009 12:28 PM daigle

Fix errors in workflow scheduler unit test

5138 11/24/2009 12:26 PM daigle

Create database scripts for workflow scheduler

5137 11/24/2009 12:25 PM daigle

Do not register the session service

5136 11/23/2009 10:05 AM Chris Jones

I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.

5135 11/23/2009 09:49 AM Chris Jones

I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.

5134 11/23/2009 09:47 AM Chris Jones

I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.

5133 11/23/2009 09:44 AM Chris Jones

I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.

5132 11/23/2009 09:41 AM Chris Jones

These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.

5131 11/23/2009 09:39 AM Chris Jones

I've added the PARC CSS file, which uses colors and images found at the PARC website.

5130 11/23/2009 09:37 AM Chris Jones

These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the http://www.palmyraresearch.org website layout (e.g. some navigation links have been removed).

5129 11/23/2009 09:34 AM Chris Jones

Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.

5128 11/23/2009 09:32 AM Chris Jones

I'm adding the parc.cfg configuration file, which is effectively a copy of the nceas.cfg file.

5126 11/23/2009 09:29 AM Chris Jones

This is the PARC XML configuration file. I've removed the EML beta 4-6 doctype identifiers since this skin will only deal with EML 2.1.0 documents.

5125 11/23/2009 09:26 AM Chris Jones

I'm adding the Metacat metadata properties file for the PARC installation.

5124 11/23/2009 09:25 AM Chris Jones

I'm adding the properties file configured for the Palmyra Atoll Research Consortium's installation.

5123 11/23/2009 09:15 AM Chris Jones

I'm adding in the parc directory, which will contain the skin for the Palmyra Atoll Research Consortium.

5122 11/19/2009 08:19 AM ben leinfelder

special handling for RDF namespace documents (semtools project)

5121 11/13/2009 04:03 PM daigle

Start to fix I.E. gui issues

5120 11/10/2009 03:13 PM daigle

add connection serial number where it was missing.

5119 11/10/2009 01:31 PM ben leinfelder

check for IE6 and show warning if they are using it

5118 11/09/2009 02:43 PM daigle

Remove seconds and minutes values from workflow scheduler and add weeks and months.

5117 11/09/2009 02:42 PM daigle

Include kar id in delete url parameters so resultset will render after delete

5116 11/09/2009 10:37 AM daigle

Add ability to schedule daily, weekly and monthly jobs.

5115 11/09/2009 10:07 AM daigle

Format and add comments.

5114 11/09/2009 08:51 AM daigle

Beef up comments

5113 11/06/2009 02:48 PM daigle

add method to read test file from disk

5112 11/06/2009 02:47 PM daigle

add getaccesscontrol and setaccess api calls

5111 11/06/2009 02:47 PM daigle

Add access api test and supporting files

5110 11/06/2009 02:46 PM daigle

handle ben's change to the metacat client read api because it returns inputstream now

5109 11/06/2009 02:44 PM daigle

Handle the case of trying to insert a conflicting permission order for a document

5108 11/06/2009 02:43 PM daigle

move dbconnection object out of base class and create it for each db access so it can be released

5107 11/06/2009 02:41 PM daigle

Add success message to metacat response for setaccess action

5106 11/06/2009 01:05 PM ben leinfelder

add id attributes for form elements (in case IE6 needed them) but it appears they are not required

5105 11/05/2009 11:34 AM ben leinfelder

add the "value" attribute for metadata tag downloads

5104 11/05/2009 10:32 AM ben leinfelder

handle multiple <principal> elements in the allow/deny blocks

5103 11/04/2009 03:05 PM daigle

Verify we are in the permission and principal sections before setting values on dao object.

5102 11/03/2009 06:26 PM ben leinfelder

add code block (commented out) to use in case "?column?" headers become an issue.

5101 11/03/2009 03:44 PM ben leinfelder

handle repeating "?column?" headers - somewhat naively, but consistent

5100 11/03/2009 11:52 AM daigle

Use OR to add permissions, not AND

5099 11/03/2009 10:31 AM daigle

Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.

5098 10/30/2009 03:39 PM daigle

change AccessControlForSingleFile to only be instantiated for one file. move ACL methods to AccessControlForSingleFile. Change format of access sections returned to EML 2.1.0.

5097 10/30/2009 03:37 PM daigle

change location of accesscontrolinterface

5096 10/30/2009 03:34 PM daigle

Removed some old commented out code

5095 10/30/2009 03:31 PM daigle

Remove unneeded references to Timer

5094 10/27/2009 03:42 PM ben leinfelder

SMS-related addition: retrieve docids for a given doctype

5093 10/26/2009 10:20 AM Chris Jones

QueryTerm.java will produce an incorrect SQL statement when there is an attribute in the XPath being used to search on. Regardless of the presence of the attribute, the clause:

(SELECT nodeid FROM xml_index WHERE path LIKE " + "'" + path + "') "

would be added to the query....

5091 10/16/2009 11:12 AM daigle

Create access dao and centralized db access classes. Update create access code to combine access records for principal/doc/accesstype when multiple exist.

5090 10/16/2009 11:10 AM daigle

Move access control source to it's own directory.

5089 10/16/2009 11:10 AM daigle

Move access control source to it's own directory.

5088 10/16/2009 11:08 AM daigle

Create workflow access pages

5087 10/15/2009 03:55 PM ben leinfelder

correct the metadata matrix for "transposed" data download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4452

5086 10/15/2009 02:53 PM ben leinfelder

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

5085 10/15/2009 02:53 PM ben leinfelder

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

5084 10/15/2009 02:51 PM ben leinfelder

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

5083 10/15/2009 10:42 AM ben leinfelder

include at least one metadata field and then include any that are additional (_2, _3....etc)
bug #4452

5082 10/13/2009 03:01 PM daigle

Add ability for doc owner to add user access to workflows.

5081 10/06/2009 01:58 PM ben leinfelder

allow user to specify the data columns included for the transpose data set (score, response, response file).
decided in today's CC

5080 10/06/2009 10:59 AM daigle

Only allow workflows with kars that have user write permissions to be scheduled.

5079 10/06/2009 10:58 AM daigle

Add authorization check before scheduling a job in the workflow scheduler

5078 10/06/2009 10:57 AM daigle

Change RequestUtil forwardRequest() method to throw MetacatUtilException.

5077 10/06/2009 10:56 AM daigle

Include the authorization service stub jars in workflow scheduler build

5076 10/06/2009 10:55 AM daigle

Change RequestUtil forwardRequest() method to throw MetacatUtilException.

5075 10/06/2009 10:53 AM daigle

submit a form into a div via ajax using either form id or form object

5074 10/06/2009 10:52 AM daigle

move worflow page sections from common into the sanparks skin files

5073 10/02/2009 01:12 PM daigle

Remove commented out sections

5072 10/02/2009 01:11 PM daigle

Add authorization functionality

5071 10/02/2009 01:07 PM daigle

Change sanparks skin to log in with browser session instead of metacat client session so session can be validated on other pages.

5070 10/02/2009 12:59 PM daigle

Add user name to SessionData object

5069 10/01/2009 03:20 PM ben leinfelder

use arguments for the main() method - hardcoded URLs and test docids are poor form

5068 10/01/2009 03:04 PM ben leinfelder

choices for metadata tags to include:
1-10, increments of 1; 11-50 increments of 10

5067 10/01/2009 01:28 PM ben leinfelder

add "responsefile" column as data in the transpose
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

5066 10/01/2009 12:12 PM ben leinfelder

return InputStream instead of Reader in the MetacatClient read() and readInlineData() methods. Can now handle binary data
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4432

5065 09/28/2009 10:09 AM ben leinfelder

include input selection for the number of metadata fields to download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414