Fix the bug of http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4645. handleGetRevisionAndDocTypeAction will search both xml_documents and xml_revisions table.It also changed some constrain in AccessionNumber when user update a document, of which all previous versions are in xml_revisions table.
Fix main cross browser gui compatibility issues in sanparks tpc skin.
Remove commas from the end of lists because they break IE
remove the "optional" tip since it is not currently optional
add required authentication exception class so that the scheduler can compile
add properties expected by the DB property service
use workflowscheduler DB
use @class attribute for path queries rather than @name
Add a sleep statement between getting the dtd from source and checking for it via url. Add method names to log output.
Get all eml code from svn instead of cvs
Log doc and rev query counts and times. Fix mis-spellings.
remove extra open paren
remove call to print busy db connections
add xml_revisions docid index
Add debug to show sql
Fix for Bug #4637 - Metacat Harvester fails to catch some insert and update failures. As per comments in the bug entry, the Metacat Harvester logic has been modified to examine the Metacat client return string to confirm that it contains the substring "<success>" following an insert or update operation. It no longer considers just the absence of an exception as indicative of a successful operation.
log connection warnings only when thresholds are exceeded. Add method names to log output
add method name to log statements
fix spelling of word additional
add method name to log messages and create configured thresholds for warning messages
add parc-moderators to config.username
I've added the PARC and PISCO organizations to the delete and confirm form templates for the data registry application.
Change log levels where appropriate and add class/method name to output.
Change warn messages to info
beef up error log messages
Make sure session data exists before extracting information
Separate code to do tls and non-tls authentication. Introduce AuthTLSException to make error handling easier.
Beefed up the logging
remove registry.config.username value
Start to flesh out the eclipse metacat setup document
Create some basic workflow scheduler system installation documents
When comparing lat and long ranges, make sure the values have content first. Perl values with no content = 0.
Change add sql to use a prepared statement. Only try to download a cert if a url was provided.
change unregister error message to be an info message
fix file name reference for skin configuration file
added a commented out line for auth.moderators for the parc system. This will get uncommented on the parc system and the existing auth.moderators will be commented out.
I've removed the value for the PARC registry.config.site property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.
hard code parc home url
Redirect data.palmyraresearch.org to parc skin
I've added the PARC organization to the login form template.
I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.
This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.
added parc to list of available skins.
Fix errors in workflow scheduler unit test
Create database scripts for workflow scheduler
Do not register the session service
I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.
I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.
I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.
I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.
These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.
I've added the PARC CSS file, which uses colors and images found at the PARC website.
These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the http://www.palmyraresearch.org website layout (e.g. some navigation links have been removed).
Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.
I'm adding the parc.cfg configuration file, which is effectively a copy of the nceas.cfg file.
This is the PARC XML configuration file. I've removed the EML beta 4-6 doctype identifiers since this skin will only deal with EML 2.1.0 documents.
I'm adding the Metacat metadata properties file for the PARC installation.
I'm adding the properties file configured for the Palmyra Atoll Research Consortium's installation.
I'm adding in the parc directory, which will contain the skin for the Palmyra Atoll Research Consortium.
special handling for RDF namespace documents (semtools project)
Start to fix I.E. gui issues
add connection serial number where it was missing.
check for IE6 and show warning if they are using it
Remove seconds and minutes values from workflow scheduler and add weeks and months.
Include kar id in delete url parameters so resultset will render after delete
Add ability to schedule daily, weekly and monthly jobs.
Format and add comments.
Beef up comments
add method to read test file from disk
add getaccesscontrol and setaccess api calls
Add access api test and supporting files
handle ben's change to the metacat client read api because it returns inputstream now
Handle the case of trying to insert a conflicting permission order for a document
move dbconnection object out of base class and create it for each db access so it can be released
Add success message to metacat response for setaccess action
add id attributes for form elements (in case IE6 needed them) but it appears they are not required
add the "value" attribute for metadata tag downloads
handle multiple <principal> elements in the allow/deny blocks
Verify we are in the permission and principal sections before setting values on dao object.
add code block (commented out) to use in case "?column?" headers become an issue.
handle repeating "?column?" headers - somewhat naively, but consistent
Use OR to add permissions, not AND
Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.
change AccessControlForSingleFile to only be instantiated for one file. move ACL methods to AccessControlForSingleFile. Change format of access sections returned to EML 2.1.0.
change location of accesscontrolinterface
Removed some old commented out code
Remove unneeded references to Timer
SMS-related addition: retrieve docids for a given doctype
QueryTerm.java will produce an incorrect SQL statement when there is an attribute in the XPath being used to search on. Regardless of the presence of the attribute, the clause:
(SELECT nodeid FROM xml_index WHERE path LIKE " + "'" + path + "') "
would be added to the query....
Create access dao and centralized db access classes. Update create access code to combine access records for principal/doc/accesstype when multiple exist.
Move access control source to it's own directory.
Create workflow access pages
correct the metadata matrix for "transposed" data downloadhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=4452
order the unions by widthaddresses this bug:http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376
include at least one metadata field and then include any that are additional (_2, _3....etc)bug #4452