Metacat

constructor DBEntityResolver(Connection conn) is needed; cleared by mistake

DBEntityResolver:
- added new parameter dtd for upload on Metacat file system; optional; Reader
- new routines to upload dtd if provided
- systemID of metadata document is used to exctract the filename of new dtd;
- the new dtd is uploaded on Metacat file system as specified by dtdPath property;...

dtdPath and dtdURL properties added needed for DTD upload on Metacat file system

enable the UNIQUE constraint in xml_catalog table

added additional actions to facilitate a web based interface to the replication servlet.

web page control panel for replication

removed the initial connection pool creation step in init()

comment out line in read action that sends a copy of docid prior to returning doc
in XML format (apparent debug statement left in by mistake)

added knb to resultsetspages

added replication for the xml_catalog table. Right now it is only replicated when the deltaT handler is called. I will add more replication times later.

parser for the xml encoding of the xml_catalog tableing (fi

added an ant substitution for the jdbc connection string (fixed typo)b

added an ant substitution for the jdbc connection string

added ant substitution for server and replication-log

added the replication servlet to the default web.xml file.

added a logging system for replication. The log file location is set in metacat.properties

cleaned up code, added more complete documentation of replication algorithms and datastructures.

made replication on insert or update us. Also made a method in AccessionNumber public so that you can tell if an accession number has already been used.e place be

An asynchronous replication handler. This class creates a new thread to handle replication so that the user does not have to wait for replication to take place before he/she sees the result of an insert or update.

updated file locking mechanisms to use revisions instead of dates.

fixed typo, removed extra print statements

a script for clearing the contents of a metadat DB without destroying the table structures and without erasing the DTD and XSL entries in xml_catalog.

added replication_on_insert handling. Changed replication from date_updated base replication to revision number replication.

change the generation of Accession# in the form of <sidecode>.<createdate>

added revision number tracking support to xml_documents and xml_revisions. Also added an updated flag as a replacement for date based replication handling.

replication on insert functionality is now working.

added more replication/file locking functionality.

added more locking support and support for remote update of files.

added more locking functionality for replication

AccessControlList
- methods for parsing and loading acl file
- checkup method for permission for given principal on given resource
DBQuery
- checkup for READ permission using AccessControlList.hasPermission()
DocumentImpl
- using AccessControlList object to parse and load an acl file into xml_access table...

cleaned up code, added new static methods to MetacatReplication for handling static queries and getting URL content.

updated insert handling and added an action to request the time from a remote server.

created locking action in replication servlet and added semi-support to documentImpl to handle documents updatedee by replicatio

Modified stylesheets and server code to use a single "read" action instead
of the earlier "getdocument" and "getrelateddocument" actions. In the
process, developed and started to utilize a new suite of URL "protocol
handlers" that are in the package "edu.ucsb.nceas.protocols" and handle...

Fixed typo in create table syntax (added missing comma) for xml_access table.

Modified the build.xml file to support the new protocol handler classes,
which need to be built in a separate jar file bust it must be installed
as part of the tomcat servlet environment, not the web application. Now a
command of "ant protocol" will create the protocol.jar file, which must be...

Added a new URL protocol handler class for the metacat protocol. This
class will replace the current MetacatURL class in a much simpler and
extensible manner. See the documentation for java.net.URLConnection and
java.net.URL for details.

this class allows the parsing of xml data sent by a replication server to assertain document info about a remote document.

added functionality to allow the replication servlet to assertain and insert user and group info into the local database. started implementation of insert replication handler (it is commented out in this commit)

CREATE TABLE xml_access (
docid VARCHAR2, -- the document id #
principal_name VARCHAR2, -- name of user, group, etc.
permission NUMBER, -- "read", "write", "all"
perm_type VARCHAR2, -- "allowed" or "denied"
perm_order VARCHAR2 -- "allow first" or "deny first"...

fixed compatibility problem by overloading the write method. Jivka's new parameter (Reader acl) is now defaulted to null if it is not explicitly declared.

fixed typo that was accidentally committed.

added interface to handle a new "acl" parameter bringing the text of a xml access file for a given metadata document
the "acl" parameter is optional and should be sent on INSERT or UPDATE action.

added ticket_counter and deny attributes to xml_access table

new class for parsing ACL XML file and loading acl data into metacat db

added delete functionality

Add the eml style sheet into metacat module.

added support for server_location in the xml_revisions table.

removed inadvertent comments

added needed table fields for storing document location in xml_documents

removed dependence on a server code in the accession number of each document. the file's resident server is now located in xml_documents.server_location.

changed alpha to dev in odbc driver param

removed servercode param

removed server-code param

no message

added new server_location field to xml_documents with a foreign key to xml_replication.serverid

now updates the xml_replication last_checked field

updated javadoc documentation

fixed bug/typo

no message

added server-code property

added servercode prop.

no message

changed action scheme

Modified pathquery.dtd and QuerySpecification to allow some new constraints
on queries submitted to Metacat. Now, queries can contain an optional
set of <owner> tags that identify the users for which documents should be
returned, and a list of <site> tags constraining the site identifiers...

can now send a file to another server

can now download a document from a server

no message

Changed utility query to include the user_owner field rather than the
title field, which is now obsolete.

Fixed typo in DBSAXHandler debug message.

not needed any more

it is not needed to be here

changes for using SRB v1.1.8 at LTER, NM

SRB v1.1.8

added replication properties

changed naming scheme

changed naming scheme

changed naming scheme

servlet to handle metacat replication requests.

a timer based thread that does Delta-T replication checking.

a parser to handle replication xml messages

change for using the db connection

updated xml_relation table

Changed target of the javadoc builds to the build/docs/apiDocs directory
so that we no loger version track the javadoc html files -- they changes
too much between each of the times we would generate them. Also, removed
the old javadoc documentation that was found in the "docs" subdirectory.

Updated the Javadoc documentation so that the current release can be provided
on the web site.

Fixed problem with AuthInterface, AuthLdap, and AuthMcat where the
sigantures of the methods of these classes were not in agreement, which was
causing AuthLdap to no longer compile. Changed parameter signatures so that
the 'user' parameter is used consistently in all of the methods.

bug fix about util.openDBConnection() for xmlIndex tread

small fix for exception when srbMaster is not running

not needed

XSLT transformation on "login" and "logout" action

AuthMcat
- new class for authentication through MCA; implements AuthInterface
AuthSession
- assigning HttpSession obj only after successful athentication;
- cleared isAuthenticated field - not needed
- cleared invalidate() method - not needed
AuthInterface...

added "qformat=html" form parameter for "login" and "logout" actions

changed action's value:
"Login" to "login"
"Logout" to "logout"

Modified stylesheets to use the default.css file from the new KNB web site.
Also, provided a new resultset.xsl that represents a simple freetext query
of the KNB data repository. Updated build.xml to relect the location of the
new css stylesheet.

Began work on new UI for the KNB web site. It will be the main query
interface from the KNB website.

Fixed the LDAP authentication adapter (AuthLdap.java) so that it now looks up
the distinguished name for a user before attempting to do authentication.
This is because the user's distinguished name can sometimes be based on
their uid attribute, but sometimes be based on their cn (common name)...

merge AUTH_LDAP to the main branch

clear System.exit(0) within the static block

Fixed typo in stylesheet.

More user interface changes to the HTML MARINE interface. Minor
rearrangement of columns, some link changes.