Converted Harvester chapter to RST.
download remote data and save locally when it is referenced by an EML package, then include it in the ORE map.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5522
remove systemmetadata replication option -- it is no longer a separate document in metacat
Added stub documents for chapters on DataONE and OAI-PMH (to be converted fromDuane's Word doc).
Small word choice change.
Improved formatting for index.
Added AuthInterface chapter, and a License chapter.
Converted Event Logging and Sitemaps chapters to RST.
Fixed table layout on geoserver and submission chapters. Converted Replicationchapter to RST.
Completed 'Submission' page conversion, and also converted GeoServer docs toRST format.
Partial conversion of the accessing and submitting metadata section to RST.More coming later.
include the EML and data tests in the suite
debugging data locking test
cannot check for deleted data since it is forever available (archived)
Updated the configuration section, converted word doc to RST.
Updated the Installation chapter, coverted to RST.
When the requested count in a call to listObjects() is 0, return an empty object list, not a full one. Fixes https://redmine.dataone.org/issues/2122
Minor formatting for querySystemMetadata().
Updated contributors.
Modified index to fix typo.
Edited introduction to Metacat admin guide, inserted figure.
Screenshots from the Metacat admin guide.
Updating Sphinx doc structure in prep for moving metacat admin guide to Sphinx.
exapnd permissions on the exisiting access rule not on the permission being checked. (hierarchical permissions)
defer to super class member variables
Upgrade to Hazelcast-1.9.4.5 to try to solve CLIENT_CONNECTION_LOST problems seen on the Coordinating Node.
mark client/servlet API and EarthGrid API as deprecatedhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5517
upgrade routine to purge empty replicated data files so that they can be re-replicatedhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5536
format the execution time to be a date.
Use "post" to replace "get" to fix caching issue on IE.
Make the display of the schedule table fit the IE browser.
Make sure the local id isn't null when we try to get the object from the local instance.
Simplify the error handling, and throw the exception once the CN is updated with the new status.
Set the replica status to failed (not invalidated) when we get exceptions trying to read the object bytes. Not much of a difference, but only the CN, in theory, is supposed to be able to set the invalidated status.
Set the replication status to invalidated when we have a localId, but getting the object bytes fails for any reason.
Only call super.create() if there's no localId found on the MN (ie a replica is there from an out of band process).
Get the object inputstream from the local metacat instance using MetacatHandler.get() rather than MN.getReplica() so we don't throw an InvalidToken exception when passing in a null Session. The D1Client object is never used for this local call.
interpret permissions as hierarchicalhttps://redmine.dataone.org/issues/2150
Use submitLoginFormIntoDivAndReload to replace submitLoginFormIntoDiv js function.
remove flag for independent system metadata replication -- these entries are replicated along with the data/metadata objects or via hazelcast when the actual object is not on the server.
update documentation to reflect changes to replication (client certificate)http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516
include SSL settings for client certificate-based replication
do not include the "v1" in the base url for the target MN
New D1 jars with a minor CNode.setReplicationStatus() bugfix.
The kar id will have version number.
process the current revision, not the latest!use direct object/system metadata insertion for ORE maps.
allow other Metacat process (system metadata and ORE generation) to directly insert objects and system metadata without having to go through the MN/CN methods.
sort the docids so that "old" revisions are processed before newer ones
only attempt to unlock a lock if it was created (in the finally block)
update tests to comply with these chenages:new jars with many changes -- including new CN methods: ping, describe, listChecksumAlgorithm. Removed MN.setAccessPolicy. Refactored CN.setOwner() to CN.setRightsHolder().
new jars with many changes -- including new CN methods: ping, describe, listChecksumAlgorithm. Removed MN.setAccessPolicy. Refactored CN.setOwner() to CN.setRightsHolder().
refresh the SystemMetadata entry for EML and referenced data files when parsing EML access rules -- this ensures our in-memory system metadata map is up to date WRT the DB entries.
Using a branch name for the utilities project. This branch is a copy of the trunk and it uses the BSD license.We will move this branch to a tag soon.
add revision history to the generated ORE objects -- we use the revision history of the EML package as a basis because the each ORE revision mirrors the revision of the EML package. Add a placeholder for checking if an equivalent ORE map exists in the DataONE infrastructure - this will be a call to CN.search() that looks at the solr index for OREs based on the EML package ID.
Update the parameter names expected for listObjects() to reflect the MN API changes in the architecture docs.
Change the query semantics such that we implement the MN.listObjects() where the lower datetime bound is inclusive (greater than or equal to" and the upper datetime bound in exclusive (less than). This allows easier paging in client applications.
for test to compile, provide BaseException param for setReplicationStatus. I used a NotAuthorized instance.
adjust after refactoring tests that use EML queries
In the call to MNReplication.replicate(), call back to CNReplication.setReplicationStatus() and set the status to failed when we get local exceptions, exceptions from the source MN when calling getReplica(). Send back an exception with a description when setting the status. Add a private setReplicationStatus() method to refactor these calls out.
Modify CNresourceHandler.setReplicationStatus() to use the new API signature, including the failure BaseException that is parsed out of the MMP as a file section. Log the exception message. Since this is an asynchronous call, ReplicationManager won't see a failed status, but the MNAuditTask eventually will.
Add collectReplicationStatus() to CNResourcHandler to return the BaseException or it's subclass, if any, provided in the the call to setReplicationStatus. The exception will be reported on the CN.
Change setReplicationStatus() to drop serialVersion and report the failure exception message in the CN log.
Add new D1 jars with update CNreplication API changes to SetReplicationStatus().
query for deleted metadata when testing that replication communicated the deletion. to check data, we try to update the data object on the target node (which should fail)
add test for data locking
delete data and eml on the home Metacat and check that the change propagates to the target
set SystemMetadata.archived=true on MN.deleteThere is ongoing discussion on what the exact behavior should be here, but this mimics Metacat's delete-as-archive action.http://redmine.dataone.org/issues/882
In MNodeService.replicate(), check to see if we have a replica (via an out of band channel) before we call sourceMN.getReplica().
actually include the test in the suitehttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
EML replication test with insert, update and set accesshttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
only create guid->docid mapping during metadata replication if it does not already existhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
do not treat access change as an update -- it should not attempt to retrieve the contents of the objecthttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
Change the ecogrid tag to 1.2.2.RC5.
only create guid->docid mapping during data replication if it does not already existhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
remove xml_acccess.docid reference (oops)http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
test update and set access during replication from A->Bhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
updated D1 API -- removed Permission.REPLICATE and associated parameters
a minute for replication?
process system metadata before access rules (access control is now driven by GUID so the mapping needs to be there)
Change the key of query result cache. The key now has the real search value.
include SerialVersion in describe responsehttps://redmine.dataone.org/issues/2135NOTE: d1 jars should be replaced once all schema changes are finalized and the generate d1_common code is committed to svn
comment out B->A testhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
use correct URLs for replication/Metacat client
simple tests for 2-way data replicationhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
ROLLBACK: check for non-public session in Metacat before showing the registry formhttp://bugzilla.ecoinformatics.org/process_bug.cgi
check for non-public session in Metacat before showing the registry formhttp://bugzilla.ecoinformatics.org/process_bug.cgi
redirect to the registry form following successful login - but allow an override in case we only want to render the success and stay there (ajax call from main sanparks page).
include 'archived' system metadata element in backing DB store
include the logging level with configuring logger (with file appender) for replication and dataonehttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5534
add ; to end of update command
only update accessfileid for our new guid-based records
move latest postgres access upgrade statements to oracle scripthttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
include revision clause when updating the accessfileid on the xml_acccess table
remove docid column in favor of guidhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
include "esa" context in the data registry URL.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5114
If a member node cannot be found in the node list matching the targetNodeSubject given in isNodeAuthorized(), throw a ServiceFailure exception.
Minor reformatting for readability.
fix tests:-insert default objectFormatList from d1_common (includes schemaLocation now)-calculate checksum for the system metadata using the ChecksumUtil in d1_common
update with latest d1_common/d1_lib (includes latest schema changes)