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  • svn:ignore: build
  • svn:mergeinfo: /branches/D1_0_6_2_BRANCH:6107-6121

# Date Author Comment
8941 10/28/2014 04:11 PM Jing Tao

Add the code to stop tomcat and apache.

8940 10/28/2014 04:03 PM Jing Tao

Add the "-y" option to force removing the old postgresql without prompting a y/n question.

8939 10/28/2014 02:07 PM Jing Tao

Restore the database for a gzipped sql file.

8938 10/28/2014 01:35 PM Jing Tao

Added the code to gzip the output file in the dumpall command. This will save disk space.

8937 10/24/2014 03:46 PM Jing Tao

Modified the redirect rules which didn't work.

8936 10/24/2014 02:50 PM Jing Tao

Add the code to add the attribute useHttpOnly='false' to the Context element in the context.xml file.

8935 10/24/2014 01:02 PM Jing Tao

Fixed a bug the code can get the argument from the command line.

8934 10/24/2014 12:47 PM Jing Tao

Added the code to change the permission of the backup file so the postgres user can read it.

8933 10/24/2014 12:24 PM Jing Tao

Added the code to check if the metacat backup file exists.
Added the code "exist 0" at the end of the scripts.

8932 10/24/2014 12:08 PM Jing Tao

Added the .conf to those site files since the new apache server only loads the sites with the extension.

8931 10/24/2014 09:45 AM Jing Tao

Add the code to vacuum the db.

8930 10/23/2014 04:32 PM Jing Tao

Add the code to enable the 8009 port for ajp connection in the server.xml of tomcat7.

8929 10/22/2014 12:29 PM Jing Tao

Added the code to modify the geo data directory in the metacat.properties file.

8928 10/22/2014 11:43 AM Jing Tao

Fixed some bugs to restore postgresql data.

8927 10/21/2014 09:30 PM Jing Tao

Add the code install some components for installing tomcat7

8926 10/21/2014 09:13 PM Jing Tao

Use a variable to replace the hard code.

8925 10/21/2014 07:30 PM Jing Tao

Use the version directly.

8924 10/21/2014 07:28 PM Jing Tao

Fixed a typo.

8923 10/21/2014 07:26 PM Jing Tao

put the date to an output file.

8922 10/21/2014 06:56 PM Jing Tao

A script for vacuum the db.

8921 10/21/2014 06:32 PM Jing Tao

Add a script to move the db from 8.3 to 9.1 base on a dumped file.

8920 10/21/2014 10:58 AM Jing Tao

Use the pg_dumpall command to back up all information of the database.

8919 10/20/2014 07:35 PM Jing Tao

Add the code to backup the cerificate/key of the apache server.

8918 10/20/2014 04:46 PM Jing Tao

Removed the code to write the backup file to a dvd drive.

8917 10/20/2014 02:56 PM Jing Tao

Added the code to copy Metacat and other web applications from the webapps directory in tomcat6 to tomcat7.
It also update the value of deploy.applicationDir in the metacat.properties file as well.

8916 10/20/2014 01:10 PM Jing Tao

Only insert new configuration lines once to the /etc/tomcat7/catalina.properties.

8915 10/20/2014 11:34 AM Jing Tao

Used variables to replace hard code in sed command. Also we have to escape the variables.

8914 10/20/2014 11:15 AM ben leinfelder

include type="party" attribute for the divs that contain contact information (for annotating with ORCIDs)

8913 10/20/2014 09:42 AM Jing Tao

Used variables to replace the hard code.

8912 10/17/2014 06:15 PM Jing Tao

Add the code to modify the workers.properties file.

8911 10/17/2014 05:13 PM Jing Tao

Fixed typo.

8910 10/17/2014 05:02 PM ben leinfelder

use http://tools.ietf.org/rfc/rfc3023 spec for conformsTo property. use the full xpath for EML dataTable and attribute selectors

8909 10/17/2014 04:49 PM Jing Tao

Add a script to install openjdk 7 and tomcat 7.
It also configures java, javac,keytools and tomcat7.

8908 10/15/2014 04:56 PM Jing Tao

Remove an import.

8907 10/15/2014 04:56 PM Jing Tao

Removed an import.

8906 10/15/2014 04:49 PM Jing Tao

Added the junit tests to test the NotFoundException having the deleted information.

8905 10/15/2014 04:49 PM Jing Tao

Added the junit tests to test the NotFoundException having the deleted information.

8903 10/15/2014 04:34 PM Jing Tao

Added the code to inform users the pid was deleted in the NotFound exception.

8901 10/14/2014 06:11 PM Jing Tao

Added the code to check if a not-found object was deleted in the isAuthorized method.

8899 10/14/2014 06:01 PM Jing Tao

Move the code to get the object in front of the method to get the system metadata.

8897 10/14/2014 01:45 PM Jing Tao

Add a test method to test the method determining if there is a delete event for the given id.

8896 10/14/2014 01:44 PM Jing Tao

Add a utility method for determine if there is a delete event for a given id.

8893 10/10/2014 03:04 PM Jing Tao

when we remove a slor index of a resource map, we don't need to know the content of the resource map. Instead, we will search the solr index to get information.

8890 10/10/2014 02:58 PM Jing Tao

Remove the byte array field.

8889 10/10/2014 02:16 PM Jing Tao

Removed the method which had the byte array attribute.

8887 10/10/2014 02:10 PM Jing Tao

Remove the system metadata for data objects.

8884 10/10/2014 02:01 PM Jing Tao

change the way to delete the solr index of a resource map.

8883 10/10/2014 01:23 PM Jing Tao

Backup the /etc/apache2/site-enabled directory.

8882 10/09/2014 04:40 PM Jing Tao

Remove the code to stop/start ldap server.
Change the script name to stop/start tomcat.
Also backup metacat.properties.

8880 10/06/2014 10:32 PM Jing Tao

Replace the operator "=~' by "eq" in comparing the two password fields.

8877 10/06/2014 05:42 PM Jing Tao

dd a new routine to check if the uid has been taken already in the production space during the creation process.

8875 09/25/2014 09:01 AM Lauren Walker

In the EML XSLT - Add classes to the entity details containers so they can be identified easily

8874 09/23/2014 06:27 PM ben leinfelder

add /token endpoint for annotatorJS/annotateIt.org integration. https://github.com/DataONEorg/sem-prov-design/issues/18

8872 09/22/2014 06:29 PM Jing Tao

Add code to determine if a id exists in a solr server.

8871 09/19/2014 04:15 PM ben leinfelder

include resource="#xpointer(...)" attributes for sections that are potential targets for annotation. So far we have the various people (creator, contact, etc) and data table attributes. https://github.com/DataONEorg/sem-prov-design/issues/18

8869 09/18/2014 03:12 PM Jing Tao

Persitence the system metadata object in the memory before deleting it from hazelcast.

8866 09/16/2014 05:18 PM Jing Tao

Add the code to handle the delete of the resource map.

8864 09/16/2014 05:07 PM Jing Tao

Add the code to handle to remove the resource map index.

8862 09/16/2014 04:48 PM Jing Tao

Add codes to handle remove a source map solr index.

8860 09/16/2014 04:36 PM Jing Tao

Add a field to contain the content of resource map.

8859 09/15/2014 06:31 PM Jing Tao

Add a util class to judge if a namespace is a resource map file.

8857 09/15/2014 02:32 PM Lauren Walker

Create a valid URI by using all lowercase letters when creating a name for the triple model in the Rdf Xml Subprocessor. See bug: https://projects.ecoinformatics.org/ecoinfo/issues/6595

8854 09/12/2014 04:17 PM Jing Tao

Make the delete method work.

8852 09/12/2014 04:03 PM Jing Tao

Make the deleteSystemmetadata method really roll-backable.

8850 09/12/2014 03:56 PM Jing Tao

Add the code to delete systemmetadata.

8849 09/11/2014 02:37 PM ben leinfelder

remove semantic annotation proposal - moved to github: https://github.com/DataONEorg/sem-prov-design/blob/master/docs/use-cases/semantics/semantic-annotation.md

8848 09/11/2014 09:26 AM Lauren Walker

In InsertORETest: Set the format ID of the metadata object to an EML formatId so that it gets indexed correctly.

8847 09/10/2014 02:56 PM Jing Tao

Change the d1_cn_index_processor version from 1.3.0 snapshot to 2.0.0 snapshot.

8846 09/04/2014 03:24 PM Jing Tao

Add the code to delete the records in the xml_accesssubtree table.

8844 09/02/2014 02:07 PM ben leinfelder

use configured auth.base rather than hard-coded dc=ecoinformatics,dc=org. https://projects.ecoinformatics.org/ecoinfo/issues/6592

8842 08/22/2014 05:50 PM Jing Tao

Add a code to check if the pathquery engine is enabled in the checkIndexPaths method.

8841 08/21/2014 11:50 AM Jing Tao

Adjust the number of schema fields since new ones were added.

8840 08/19/2014 11:38 AM Lauren Walker

When indexing annotations from RDFs, use the doc id to access the system metadata, not the model name since they are not always the same.

8839 08/18/2014 03:25 PM Lauren Walker

Add PROV relationships to the Solr schema. Populate the fields using the RdfXmlSubprocessor

8837 08/18/2014 10:03 AM Lauren Walker

Add wasDerivedFrom field to the Solr schema and use Sparql query to retrieve the value from the RDF

8836 08/18/2014 09:30 AM Lauren Walker

Replace the /u00A0 character encoding with space character instead since /u00A0 displays literally in browsers

8835 08/15/2014 01:25 PM Lauren Walker

Add a test class that inserts an ORE with PROV relationships

8834 08/07/2014 02:28 PM ben leinfelder

use mock CN for testing metacat implementations

8833 08/07/2014 02:12 PM ben leinfelder

remove unused tests

8832 08/07/2014 11:13 AM ben leinfelder

comment out myproxy servlets. https://redmine.dataone.org/issues/5742

8829 08/06/2014 01:48 PM ben leinfelder

convert v2 SM to v1 SM for the v1 service call response

8828 08/06/2014 01:43 PM Jing Tao

Separate the target and source version for the java compilation.

8827 08/06/2014 01:27 PM ben leinfelder

update to use v2 types for indexing

8826 08/06/2014 01:09 PM ben leinfelder

update to use v2 types for indexing

8825 08/05/2014 09:21 PM Jing Tao

Add target and source attribute to harvester, client and compile-lsid beside the target compile.

8823 08/05/2014 04:17 PM Jing Tao

Add the attribute target="1.6" when it compiles the metacat code.
The metacat.jar file can run in java 1.6 even though it was compiled in java 1.7.

8821 08/04/2014 04:08 PM Jing Tao

For the existing uidnumber, we decrease the size of vector for sorting.

8820 08/04/2014 10:04 AM Lauren Walker

Login automatically via curl rather than manually entering the cookie info for the registry test script

8819 08/01/2014 09:20 AM Jing Tao

Add the code to check if the existing highest uidNumber really exists.

8818 07/31/2014 06:10 PM Jing Tao

In the getNextUidNumber method, a mechanism to look up the highest existing udiNumber was added.

8817 07/30/2014 11:24 AM Lauren Walker

Fix XML validation errors in the metacatui confirmData template for the registry. Add a test script that submits multiple datasets to the registry.

8816 07/29/2014 05:33 PM Lauren Walker

Create a lock file for the registry
if one doesn't exist

8815 07/29/2014 04:35 PM Lauren Walker

Allow the registry form to specify a docid scope

8814 07/29/2014 03:53 PM Lauren Walker

Only lock the local docid file when creating a new docid, not when inserting, for faster upload times. Remove extra debug messages from testing.

8813 07/28/2014 05:22 PM Lauren Walker

Fix bug in the online registry where data files were not using the new docid creation process

8812 07/28/2014 03:57 PM Lauren Walker

Lock a local file while docids are being created so multiple docs can be uploaded at once

8811 07/24/2014 10:25 AM ben leinfelder

remove CN.systemMetadataChanged in favor of the CN.updateSystemMetadata method. Otherwise there's no good way to know where to fetch the auth copy from since the SM change might be to switch the authMN!

8810 07/23/2014 04:19 PM ben leinfelder

add support for v2 DataONE API.

8809 06/09/2014 04:06 PM ben leinfelder

remove old EML jar -- datamanager.jar has the EMLParser now and is pulled in with maven.

8808 06/06/2014 04:54 PM ben leinfelder

use css changes from EML project to render a PDF that fits on a printed page during export. Note that this also changes the default skin slightly (for the better, we think). https://projects.ecoinformatics.org/ecoinfo/issues/6053