Project

General

Profile

Statistics
| Revision:
  • svn:ignore: build
  • svn:mergeinfo: /branches/D1_0_6_2_BRANCH:6107-6121

# Date Author Comment
9532 02/23/2016 11:39 AM Chris Jones

Fix a couple of syntax issues.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

9531 02/23/2016 11:13 AM Chris Jones

Don't forget to set the token variable from the HTTP_AUTHORIZATION environment variable.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

9530 02/23/2016 10:19 AM Chris Jones

Add a setAuthToken() method. when the HTTP_AUTHORIZATION environment variable is set, set the value as the `auth_token_header` instance variable in the Metacat instance passed in. This requires that the Apache installation includes an HTTP rewrite rule to pass the header on to an CGI processing the request. Call this method whenever we instantiate a Metacat object....

9529 02/23/2016 10:07 AM Chris Jones

Modify the Metacat.pm sendData() method to include the Authorization HTTP header when it's available as an instance variable.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/41

9528 02/19/2016 05:25 PM Jing Tao

Add a new chechsum for the new solr schema.

9527 02/19/2016 03:41 PM Jing Tao

Add beans for the iso index.

9526 02/19/2016 03:40 PM Jing Tao

Add a bean file for the iso index.

9525 02/19/2016 03:39 PM Jing Tao

Add a bean file for the iso index.

9524 02/19/2016 03:34 PM Jing Tao

Add more fields for the iso index.

9523 02/19/2016 12:32 PM Jing Tao

In the isScienceMetacata method, the ServiceFailure exception shouldn't be caught anymore, since the code doesn't throw it.

9522 02/19/2016 12:04 PM Jing Tao

Change its mime type from binary to text.

9521 02/16/2016 08:41 AM Chris Jones

In order to access the JWT authentication token, we need to configure the Apache installation to pass the Authorization header on to CGI scripts. Do this with mod_rewrite.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

9520 02/09/2016 05:14 PM ben leinfelder

allow Metacat API calls to be made by clients providing their identity with a DataONE auth token. https://github.nceas.ucsb.edu/KNB/arctic-data/issues/43

9518 02/05/2016 11:54 AM ben leinfelder

comment out (duplicate) EML download link since it does not apply in the CN context and the same functionality exists elsewhere in the MetacatUI rendering. https://redmine.dataone.org/issues/7639

9515 02/03/2016 02:04 PM Jing Tao

Removed the sepcified path for the ldap ca file.

9514 02/03/2016 09:55 AM Jing Tao

If the user doesn's specify the ldap ca file path on the metacat.properties, it will use the default one.

9513 01/28/2016 05:14 PM Jing Tao

Remove the bypass button.

9512 01/28/2016 05:13 PM Jing Tao

Update the ezid configuration screenshot.

9510 01/28/2016 03:39 PM Jing Tao

Add the help icons on the page.

9509 01/28/2016 03:37 PM Jing Tao

Use a new screenshot with the help icon.

9507 01/28/2016 11:38 AM Jing Tao

Fixed a typo.

9506 01/28/2016 11:31 AM Jing Tao

Add the ezid section.

9505 01/28/2016 11:28 AM Jing Tao

Add the section for ezid.

9504 01/27/2016 04:24 PM Jing Tao

Updated the screenshot for the configuration pages.

9503 01/25/2016 03:06 PM Jing Tao

Add the items for the ezid backup.

9502 01/25/2016 03:05 PM Jing Tao

Change the label.

9501 01/22/2016 04:44 PM Jing Tao

fixed a label issue.

9500 01/22/2016 03:46 PM Jing Tao

Add the java code to handle the ezid configuration.

9499 01/22/2016 03:45 PM Jing Tao

Add a new property to show the status of configuration of the ezid service.

9498 01/22/2016 03:44 PM Jing Tao

Add a page for configuring the ezid.

9496 01/21/2016 02:20 PM Jing Tao

remove the password of the doi user.

9495 01/20/2016 11:30 AM Jing Tao

The getPackage method should throw an exception since the id is a data object.

9494 01/20/2016 11:17 AM Jing Tao

Put a detal code on the InvalidRequest exception in the getPackage method.

9493 01/20/2016 09:59 AM Jing Tao

If the pid it is a package id in the getPackage method, the method will throw an InvalidRequest exception.

9492 01/15/2016 05:17 PM Jing Tao

Make sure to close the prepared statement on the final statement.

9491 01/15/2016 11:57 AM Jing Tao

Close the result and connection in the finally clause to make sure they being closed.

9490 01/14/2016 01:28 PM ben leinfelder

add warning when exception encountered loading SM into map.

9489 01/13/2016 01:05 PM Jing Tao

Add the dataone create event mapping to the select clause.

9488 01/12/2016 03:48 PM Jing Tao

map the metacat log event INSERT, upload and UPLOAD to the dataone log event "create"

9487 01/12/2016 02:19 PM ben leinfelder

comment out the party annotation-target - don't think we'll be using this anytime soon (had been for annotating with orcids)

9486 01/12/2016 10:22 AM ben leinfelder

set authoritative MN to origin MN if the client did not set it on mn.create. https://projects.ecoinformatics.org/ecoinfo/issues/6938

9485 01/11/2016 10:07 AM ben leinfelder

remove ant commands in harvester configuration instructions. https://projects.ecoinformatics.org/ecoinfo/issues/6937

9484 01/11/2016 10:03 AM ben leinfelder

include metacat context in the redirect after successful harvester registration login. https://projects.ecoinformatics.org/ecoinfo/issues/6936

9483 01/06/2016 05:32 PM Jing Tao

Add a policy_id in the smReplicationPolicy table to help preserver the order of the nodes list.

9482 01/06/2016 05:28 PM Jing Tao

Use the "order by" to preserve the nodes order in the replication policy.

9481 01/05/2016 02:06 PM Jing Tao

Use the ServiceFailure to replace the InvalidRequest when it is the read-only mode (CN throws the exception).

9480 01/05/2016 09:42 AM Jing Tao

In the replicate method, the checking of the read-only mode was moved from MNodeService class to the MNResourceHandler class since it is asynchronized.

9479 01/04/2016 05:23 PM Jing Tao

The systemmetadataChanged method is asynchronized, so we put the read-only checking on the ResourceHandler class.

9478 01/04/2016 03:09 PM Jing Tao

Add the code to check if the mn is on the read-only mode.

9477 12/29/2015 12:58 PM Jing Tao

Add the code to check if the metacat is in the read-only mode.

9476 12/28/2015 04:09 PM Jing Tao

In the clean method, the metacatui build directory will be deleted as well.

9475 12/28/2015 03:19 PM Jing Tao

Add the code to handle the read-only mode.

9474 12/23/2015 01:33 PM Jing Tao

Add a junit test.

9473 12/23/2015 01:33 PM Jing Tao

Add a class to determine if the metacat is in the readonly mode.

9472 12/23/2015 01:31 PM Jing Tao

Add a new property named application.readOnlyMode.

9470 12/22/2015 05:02 PM Jing Tao

Add the check that only the administrator can shrink the connection pool.

9469 12/21/2015 03:49 PM Jing Tao

'Change the verion of the production CN from the v1 to the v2.

9467 12/18/2015 04:30 PM Jing Tao

Add two new test methods to test systemMetadataPIDExists and systemMetadataSIDExists.

9465 12/18/2015 03:40 PM Jing Tao

Close the sql statements on the four methods - getGUID, getHeadPID, systemMetadataSIDExist and systemMetadataPIDExist.

9463 12/18/2015 03:14 PM Jing Tao

Close some prepared sql statement in the summarize method.

9461 12/18/2015 11:28 AM ben leinfelder

include expiration configuration option for NCEAS accounts to prevent errors during account registration. https://projects.ecoinformatics.org/ecoinfo/issues/6917

9459 12/16/2015 04:41 PM ben leinfelder

merge from 2.0 branch: use updated node list information from cn-dev so that test will match current state of env. https://redmine.dataone.org/issues/7534

9457 12/16/2015 04:37 PM ben leinfelder

merge from 2.0 branch: initialize mock cn for test to run successfully.

9455 12/16/2015 02:58 PM ben leinfelder

merge from branch: only check for d1 rightsholder when checking permissions in original metacat code base, otherwise legacy access control tests in metcat begin to fail. https://redmine.dataone.org/issues/7560

9452 12/16/2015 09:58 AM ben leinfelder

include check for d1 rightsholder when checking permissions in original metacat code base. https://redmine.dataone.org/issues/7560

9451 12/11/2015 11:56 AM Jing Tao

Change the version to 2.6.0

9450 12/11/2015 11:53 AM Jing Tao

Set the metacat to 2.6.0 and add the db upgrade scripts.

9449 12/11/2015 11:50 AM Jing Tao

Add the sql file for the upgrading.

9448 12/11/2015 11:45 AM ben leinfelder

merge jing's commit from the 2.5 branch to include the 2.5.1 upgrade utility in properties file.

9446 12/09/2015 03:48 PM Jing Tao

Removed the jar file since it is replaced by the jar file from the maven.

9443 12/09/2015 07:59 AM ben leinfelder

merge from 2.5.x branch: neglected to replace solr schema during 2.5.0 upgrade - this will do it for 2.5.1.

9441 12/08/2015 04:49 PM Jing Tao

Escape the user names, group name and other information in the xml format.

9439 12/08/2015 04:18 PM Jing Tao

Change the metacatui to 1.8.1

9437 12/07/2015 02:06 PM Jing Tao

Add the keyword "select" into the list.

9435 12/02/2015 04:31 PM Jing Tao

Reset the xml_catalog_id sequence value to the max value of the table.

9427 11/24/2015 01:51 PM ben leinfelder

merge from branch: use hash for latest solr schema

9425 11/19/2015 11:44 AM ben leinfelder

add checks on archived flag to avoid NPE.

9424 11/19/2015 08:44 AM ben leinfelder

only consult fields to merge if there was an existing referenced doc

9422 11/18/2015 09:56 PM ben leinfelder

remove "al" prefix from subquery since we are only querying one table and do not need to use a prefix.

9421 11/18/2015 09:12 PM ben leinfelder

added 4 new schema fields so need to account for them in the test case.

9420 11/18/2015 04:41 PM ben leinfelder

subclass AnnotatorSubprocessor for use in metacat-index (uses embedded solr server and solrj for retrieving/merging existing documents).

9419 11/18/2015 04:03 PM ben leinfelder

bump trunk to 2.6.0-SNAPSHOT and pull in d1 dependencies at 2.1.0-SNAPSHOT to continue trunk development.

9416 11/18/2015 11:26 AM ben leinfelder

merge from 2.5 branch

9411 11/18/2015 10:33 AM ben leinfelder

add fileName, mediaType and mediaTypeProperties to solr schema and v2 system metadata processor

9410 11/17/2015 03:41 PM ben leinfelder

merge from 2.5 branch: use subquery to do paging before joining to identifier table. https://redmine.dataone.org/issues/7491

9408 11/16/2015 04:51 PM Jing Tao

Add more statement to debug the query performance.

9406 11/16/2015 02:24 PM ben leinfelder

refactor v2 context bean to use the v1 pattern used in metacat

9405 11/16/2015 02:21 PM ben leinfelder

include seriesId in solr schema and context file (v2 system metadata)

9404 11/16/2015 11:33 AM ben leinfelder

rollback to use entity/attribute id for the tab-pane (so it will work) and include new div id for the annotatable attribute section.

9403 11/13/2015 11:51 AM ben leinfelder

restructure attribute and party sections so that the annotatable div does not have DOM children.

9402 11/10/2015 04:09 PM Lauren Walker

Mrge from 2.5 branch: Clean up the admin and doc page styles, update all the screenshot images, and include a link to the MetacatUI Github

9391 11/03/2015 02:36 PM ben leinfelder

Use conditional method for retrieving server URL (http vs https). When metacat is configured to force SSL communication we get the https url, otherwise we get http. this allows us to use the DBTransform on localhosts that are not using SSL.

9390 11/03/2015 12:31 PM ben leinfelder

add section for CN vs MN endpoints for MetacatUI. https://projects.ecoinformatics.org/ecoinfo/issues/6532

9389 11/03/2015 11:27 AM Jing Tao

Fixed a bug that the publish method should throw an io exception.

9388 11/03/2015 11:22 AM ben leinfelder

use stable EZID 1.0.1 release tag for dependency. https://projects.ecoinformatics.org/ecoinfo/issues/6440

9387 11/02/2015 04:44 PM Lauren Walker

Move the editScienceMetadata method to the MNodeService class - only update packageId in EML on publish()

9386 11/02/2015 02:34 PM ben leinfelder

update documentation to reference Tomcat 7, Java 7 and newer apache config file name conventions. https://projects.ecoinformatics.org/ecoinfo/issues/6855

9385 10/29/2015 06:59 PM Jing Tao

Fixed a bug in the condition check for the archive field in the updateSystemMetadata method.

9384 10/29/2015 04:00 PM Jing Tao

The archived field can't be reset to false if it is true in the systemMetadataChanged method.

9383 10/29/2015 03:56 PM Jing Tao

Doesn't allow to reset the archived field to be false if the field is true in the updateSystemMetadata method.