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jones
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/**
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203
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jones
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* '$RCSfile$'
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2093
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tao
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* Purpose: A Class that represents a structured query, and can be
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* constructed from an XML serialization conforming to
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* pathquery.dtd. The printSQL() method can be used to print
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203
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jones
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* a SQL serialization of the query.
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* Copyright: 2000 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* Authors: Matt Jones
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155
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jones
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*
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203
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jones
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* '$Author$'
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* '$Date$'
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* '$Revision$'
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669
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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155
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jones
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*/
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package edu.ucsb.nceas.metacat;
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jones
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import java.io.IOException;
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import java.io.Reader;
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import java.io.StringReader;
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6602
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leinfelder
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import java.util.ArrayList;
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2067
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jones
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import java.util.Enumeration;
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6602
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leinfelder
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import java.util.List;
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155
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jones
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import java.util.Stack;
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158
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jones
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import java.util.Vector;
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155
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jones
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5015
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daigle
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import edu.ucsb.nceas.metacat.shared.MetacatUtilException;
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4698
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daigle
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import edu.ucsb.nceas.metacat.util.MetacatUtil;
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4812
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daigle
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import edu.ucsb.nceas.metacat.util.SystemUtil;
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4854
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daigle
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//import edu.ucsb.nceas.utilities.UtilException;
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2067
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jones
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2663
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sgarg
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import org.apache.log4j.Logger;
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185
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jones
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import org.xml.sax.Attributes;
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158
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jones
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import org.xml.sax.InputSource;
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import org.xml.sax.SAXException;
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185
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jones
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import org.xml.sax.XMLReader;
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2067
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jones
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import org.xml.sax.helpers.DefaultHandler;
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185
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jones
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import org.xml.sax.helpers.XMLReaderFactory;
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2419
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sgarg
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import java.util.Iterator;
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155
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jones
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402
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berkley
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/**
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2067
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jones
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* A Class that represents a structured query, and can be constructed from an
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* XML serialization conforming to
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2093
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tao
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*
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2067
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jones
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* @see pathquery.dtd. The printSQL() method can be used to print a SQL
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* serialization of the query.
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155
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*/
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2067
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jones
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public class QuerySpecification extends DefaultHandler
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{
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1832
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tao
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2067
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jones
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/** flag determining whether extended query terms are present */
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private boolean containsExtendedSQL = false;
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158
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jones
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3235
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sledge
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/** flag determining whether predicates are present */
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private boolean containsPredicates = false;
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/** Identifier for this query document */
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private String meta_file_id;
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158
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jones
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/** Title of this query */
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private String queryTitle;
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/** List of document types to be returned using package back tracing */
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private Vector returnDocList;
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/** List of document types to be searched */
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private Vector filterDocList;
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/** List of fields to be returned in result set */
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private Vector returnFieldList;
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3769
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tao
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/** List of fields with "[" and "]" in result set. This is a subset of returnFieldList.
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* If some of return fields have [, those fields will be stored this vector (we have different query for those return fields */
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private Vector returnFieldListWithPredicates;
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2067
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jones
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/** List of users owning documents to be searched */
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private Vector ownerList;
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/** The root query group that contains the recursive query constraints */
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private QueryGroup query = null;
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3766
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tao
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/** A string buffer to stored normalized query (Sometimes, the query have
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* a value like "&", it will cause problem in html transform). So we need a
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* normalized query xml string.
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*/
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private StringBuffer xml = new StringBuffer();
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// Query data structures used temporarily during XML parsing
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private Stack elementStack;
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private Stack queryStack;
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private String currentValue;
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private String currentPathexpr;
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private String parserName = null;
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private String accNumberSeparator = null;
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private boolean percentageSearch = false;
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private String userName = null;
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private static final String PUBLIC = "public";
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private String[] group = null;
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public static final String ATTRIBUTESYMBOL = "@";
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3235
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sledge
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public static final char PREDICATE_START = '[';
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public static final char PREDICATE_END = ']';
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3308
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tao
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//private boolean hasAttributeReturnField = false;
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2067
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jones
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3308
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tao
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//private Hashtable attributeReturnList = new Hashtable();
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2067
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jones
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3308
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tao
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//private int countAttributeReturnField = 0;
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2067
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jones
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2093
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tao
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private StringBuffer textBuffer = new StringBuffer();
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3223
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tao
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2663
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sgarg
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private static Logger logMetacat = Logger.getLogger(QuerySpecification.class);
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2067
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jones
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/**
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* construct an instance of the QuerySpecification class
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2093
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tao
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*
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2067
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jones
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* @param queryspec
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* the XML representation of the query (should conform to
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* pathquery.dtd) as a Reader
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* @param parserName
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* the fully qualified name of a Java Class implementing the
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* org.xml.sax.XMLReader interface
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*/
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public QuerySpecification(Reader queryspec, String parserName,
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String accNumberSeparator) throws IOException
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{
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super();
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// Initialize the class variables
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returnDocList = new Vector();
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filterDocList = new Vector();
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| 158 |
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elementStack = new Stack();
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queryStack = new Stack();
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returnFieldList = new Vector();
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3769
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tao
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returnFieldListWithPredicates = new Vector();
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2067
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jones
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ownerList = new Vector();
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this.parserName = parserName;
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this.accNumberSeparator = accNumberSeparator;
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// Initialize the parser and read the queryspec
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XMLReader parser = initializeParser();
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| 168 |
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if (parser == null) {
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| 169 |
5311
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daigle
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logMetacat.error("QuerySpecification() - SAX parser not instantiated properly.");
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2067
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jones
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}
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| 171 |
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try {
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| 172 |
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parser.parse(new InputSource(queryspec));
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5311
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daigle
|
} catch (SAXException se) {
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| 174 |
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logMetacat.error("QuerySpecification() - SAX error parsing data: " + se.getMessage());
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| 175 |
2067
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jones
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}
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| 176 |
181
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jones
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}
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| 177 |
2067
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jones
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|
| 178 |
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/**
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| 179 |
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* construct an instance of the QuerySpecification class
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| 180 |
2093
|
tao
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*
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| 181 |
2067
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jones
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* @param queryspec
|
| 182 |
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* the XML representation of the query (should conform to
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| 183 |
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* pathquery.dtd) as a String
|
| 184 |
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* @param parserName
|
| 185 |
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* the fully qualified name of a Java Class implementing the
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| 186 |
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* org.xml.sax.Parser interface
|
| 187 |
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*/
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| 188 |
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public QuerySpecification(String queryspec, String parserName,
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| 189 |
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String accNumberSeparator) throws IOException
|
| 190 |
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{
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| 191 |
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this(new StringReader(queryspec), parserName, accNumberSeparator);
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| 192 |
155
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jones
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}
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| 193 |
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| 194 |
2067
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jones
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/**
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| 195 |
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* construct an instance of the QuerySpecification class which don't need
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| 196 |
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* to parser a xml document
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| 197 |
2093
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tao
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*
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| 198 |
2067
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jones
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* @param accNumberSeparator
|
| 199 |
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* the separator between doc version
|
| 200 |
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*/
|
| 201 |
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public QuerySpecification(String accNumberSeparator) throws IOException
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| 202 |
2045
|
tao
|
{
|
| 203 |
2067
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jones
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// Initialize the class variables
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| 204 |
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returnDocList = new Vector();
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| 205 |
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filterDocList = new Vector();
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| 206 |
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elementStack = new Stack();
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| 207 |
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queryStack = new Stack();
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| 208 |
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returnFieldList = new Vector();
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3769
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tao
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returnFieldListWithPredicates = new Vector();
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| 210 |
2067
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jones
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ownerList = new Vector();
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| 211 |
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this.accNumberSeparator = accNumberSeparator;
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| 212 |
2045
|
tao
|
}
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| 213 |
2067
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jones
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| 214 |
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/**
|
| 215 |
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* Method to set user name
|
| 216 |
2093
|
tao
|
*
|
| 217 |
2067
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jones
|
* @param myName
|
| 218 |
|
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* the user name
|
| 219 |
|
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*/
|
| 220 |
|
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public void setUserName(String myName)
|
| 221 |
2045
|
tao
|
{
|
| 222 |
2067
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jones
|
//to lower case
|
| 223 |
|
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if (myName != null) {
|
| 224 |
|
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this.userName = myName.toLowerCase();
|
| 225 |
|
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} else {
|
| 226 |
|
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this.userName = myName;
|
| 227 |
|
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}
|
| 228 |
2045
|
tao
|
}
|
| 229 |
2067
|
jones
|
|
| 230 |
|
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/**
|
| 231 |
|
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* Method to set user group
|
| 232 |
2093
|
tao
|
*
|
| 233 |
2067
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jones
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* @param myGroup
|
| 234 |
|
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* the user group
|
| 235 |
|
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*/
|
| 236 |
|
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public void setGroup(String[] myGroup)
|
| 237 |
1301
|
tao
|
{
|
| 238 |
2067
|
jones
|
this.group = myGroup;
|
| 239 |
1301
|
tao
|
}
|
| 240 |
2067
|
jones
|
|
| 241 |
|
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/**
|
| 242 |
|
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* Method to indicate this query is a percentage search
|
| 243 |
|
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*/
|
| 244 |
|
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public boolean isPercentageSearch()
|
| 245 |
1301
|
tao
|
{
|
| 246 |
2067
|
jones
|
return percentageSearch;
|
| 247 |
1301
|
tao
|
}
|
| 248 |
2067
|
jones
|
|
| 249 |
|
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/*
|
| 250 |
|
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* Method to get owner query. If it is owner it has all permission
|
| 251 |
|
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*/
|
| 252 |
7407
|
leinfelder
|
private String createOwnerQuery()
|
| 253 |
1301
|
tao
|
{
|
| 254 |
2067
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jones
|
String ownerQuery = null;
|
| 255 |
3223
|
tao
|
//if user is public, we don't need to run owner query
|
| 256 |
|
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if (userName != null && !userName.equalsIgnoreCase(PUBLIC))
|
| 257 |
|
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{
|
| 258 |
|
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ownerQuery = "SELECT docid FROM xml_documents WHERE ";
|
| 259 |
|
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if (userName != null && !userName.equals("")) {
|
| 260 |
|
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ownerQuery = ownerQuery + "lower(user_owner) ='" + userName + "'";
|
| 261 |
|
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}
|
| 262 |
2067
|
jones
|
}
|
| 263 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.createOwerQuery - OwnerQuery: " + ownerQuery);
|
| 264 |
2067
|
jones
|
return ownerQuery;
|
| 265 |
|
|
}
|
| 266 |
|
|
|
| 267 |
|
|
/*
|
| 268 |
|
|
* Method to create query for xml_access, this part is to get docid list
|
| 269 |
|
|
* which have a allow rule for a given user
|
| 270 |
|
|
*/
|
| 271 |
|
|
private String createAllowRuleQuery()
|
| 272 |
1301
|
tao
|
{
|
| 273 |
2067
|
jones
|
String allowQuery = null;
|
| 274 |
|
|
String allowString = constructAllowString();
|
| 275 |
7407
|
leinfelder
|
allowQuery = "SELECT guid from xml_access " +
|
| 276 |
|
|
"WHERE ( " + allowString;
|
| 277 |
3312
|
tao
|
allowQuery = allowQuery + ")";
|
| 278 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.createAllowRuleQuery - allow query is: " + allowQuery);
|
| 279 |
2067
|
jones
|
return allowQuery;
|
| 280 |
|
|
|
| 281 |
1301
|
tao
|
}
|
| 282 |
2067
|
jones
|
|
| 283 |
|
|
/* Method to construct a allow rule string */
|
| 284 |
|
|
private String constructAllowString()
|
| 285 |
1301
|
tao
|
{
|
| 286 |
2067
|
jones
|
String allowQuery = "";
|
| 287 |
3313
|
tao
|
|
| 288 |
|
|
// add public
|
| 289 |
|
|
allowQuery = "(lower(principal_name) = '" + PUBLIC
|
| 290 |
|
|
+ "'";
|
| 291 |
|
|
|
| 292 |
|
|
// add user name
|
| 293 |
|
|
if (userName != null && !userName.equals("") && !userName.equalsIgnoreCase(PUBLIC)) {
|
| 294 |
|
|
allowQuery = allowQuery + "OR lower(principal_name) = '" + userName +"'";
|
| 295 |
|
|
|
| 296 |
2067
|
jones
|
}
|
| 297 |
3313
|
tao
|
// add group
|
| 298 |
2067
|
jones
|
if (group != null) {
|
| 299 |
|
|
for (int i = 0; i < group.length; i++) {
|
| 300 |
|
|
String groupUint = group[i];
|
| 301 |
|
|
if (groupUint != null && !groupUint.equals("")) {
|
| 302 |
|
|
groupUint = groupUint.toLowerCase();
|
| 303 |
3313
|
tao
|
allowQuery = allowQuery + " OR lower(principal_name) = '"
|
| 304 |
|
|
+ groupUint + "'";
|
| 305 |
2067
|
jones
|
}//if
|
| 306 |
|
|
}//for
|
| 307 |
1301
|
tao
|
}//if
|
| 308 |
3313
|
tao
|
// add allow rule
|
| 309 |
|
|
allowQuery = allowQuery + ") AND perm_type = 'allow'" + " AND permission > 3";
|
| 310 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.constructAllowString - allow string is: " + allowQuery);
|
| 311 |
2067
|
jones
|
return allowQuery;
|
| 312 |
|
|
}
|
| 313 |
155
|
jones
|
|
| 314 |
2067
|
jones
|
/*
|
| 315 |
|
|
* Method to create query for xml_access, this part is to get docid list
|
| 316 |
|
|
* which have a deny rule and perm_order is allowFirst for a given user.
|
| 317 |
|
|
* This means the user will be denied to read
|
| 318 |
|
|
*/
|
| 319 |
|
|
private String createDenyRuleQuery()
|
| 320 |
|
|
{
|
| 321 |
|
|
String denyQuery = null;
|
| 322 |
|
|
String denyString = constructDenyString();
|
| 323 |
7407
|
leinfelder
|
denyQuery = "SELECT guid from xml_access " +
|
| 324 |
|
|
"WHERE ( " + denyString;
|
| 325 |
3312
|
tao
|
denyQuery = denyQuery + ") ";
|
| 326 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.createDenyRuleQuery - denyquery is: " + denyQuery);
|
| 327 |
2067
|
jones
|
return denyQuery;
|
| 328 |
711
|
jones
|
|
| 329 |
2067
|
jones
|
}
|
| 330 |
181
|
jones
|
|
| 331 |
2067
|
jones
|
/* Construct deny string */
|
| 332 |
|
|
private String constructDenyString()
|
| 333 |
402
|
berkley
|
{
|
| 334 |
2067
|
jones
|
String denyQuery = "";
|
| 335 |
3313
|
tao
|
|
| 336 |
|
|
// add public
|
| 337 |
|
|
denyQuery = "(lower(principal_name) = '" + PUBLIC
|
| 338 |
|
|
+ "'";
|
| 339 |
|
|
|
| 340 |
|
|
// add user name
|
| 341 |
|
|
if (userName != null && !userName.equals("") && !userName.equalsIgnoreCase(PUBLIC)) {
|
| 342 |
|
|
denyQuery = denyQuery + "OR lower(principal_name) = '" + userName +"'";
|
| 343 |
|
|
|
| 344 |
|
|
}
|
| 345 |
|
|
// add groups
|
| 346 |
|
|
if (group != null) {
|
| 347 |
|
|
for (int i = 0; i < group.length; i++) {
|
| 348 |
|
|
String groupUint = group[i];
|
| 349 |
|
|
if (groupUint != null && !groupUint.equals("")) {
|
| 350 |
|
|
groupUint = groupUint.toLowerCase();
|
| 351 |
|
|
denyQuery = denyQuery + " OR lower(principal_name) = '"
|
| 352 |
|
|
+ groupUint + "'";
|
| 353 |
|
|
}//if
|
| 354 |
|
|
}//for
|
| 355 |
|
|
}//if
|
| 356 |
|
|
// add deny rules
|
| 357 |
|
|
denyQuery = denyQuery + ") AND perm_type = 'deny'" + " AND perm_order ='allowFirst'" +" AND permission > 3";
|
| 358 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.constructDenyString - deny string is: " + denyQuery);
|
| 359 |
3313
|
tao
|
return denyQuery;
|
| 360 |
|
|
|
| 361 |
402
|
berkley
|
}
|
| 362 |
2067
|
jones
|
|
| 363 |
|
|
/**
|
| 364 |
|
|
* Method to append a access control query to SQL. So in DBQuery class, we
|
| 365 |
|
|
* can get docid from both user specified query and access control query.
|
| 366 |
|
|
* We don't need to checking permission after we get the doclist. It will
|
| 367 |
|
|
* be good to performance
|
| 368 |
2093
|
tao
|
*
|
| 369 |
2067
|
jones
|
*/
|
| 370 |
|
|
public String getAccessQuery()
|
| 371 |
402
|
berkley
|
{
|
| 372 |
2067
|
jones
|
String accessQuery = null;
|
| 373 |
7407
|
leinfelder
|
String owner = createOwnerQuery();
|
| 374 |
2067
|
jones
|
String allow = createAllowRuleQuery();
|
| 375 |
|
|
String deny = createDenyRuleQuery();
|
| 376 |
5311
|
daigle
|
|
| 377 |
7407
|
leinfelder
|
if (owner != null)
|
| 378 |
3223
|
tao
|
{
|
| 379 |
7407
|
leinfelder
|
accessQuery = " AND (xml_documents.docid IN (" + owner + ")";
|
| 380 |
|
|
accessQuery = accessQuery + " OR (identifier.guid IN (" + allow + ")"
|
| 381 |
|
|
+ " AND identifier.guid NOT IN (" + deny + ")))";
|
| 382 |
3223
|
tao
|
}
|
| 383 |
|
|
else
|
| 384 |
|
|
{
|
| 385 |
7407
|
leinfelder
|
accessQuery = " AND (identifier.guid IN (" + allow + ")"
|
| 386 |
|
|
+ " AND identifier.guid NOT IN (" + deny + "))";
|
| 387 |
3223
|
tao
|
}
|
| 388 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.getAccessQuery - access query is: " + accessQuery);
|
| 389 |
2067
|
jones
|
return accessQuery;
|
| 390 |
402
|
berkley
|
}
|
| 391 |
745
|
jones
|
|
| 392 |
2067
|
jones
|
/**
|
| 393 |
|
|
* Returns true if the parsed query contains and extended xml query (i.e.
|
| 394 |
|
|
* there is at least one <returnfield> in the pathquery document)
|
| 395 |
|
|
*/
|
| 396 |
|
|
public boolean containsExtendedSQL()
|
| 397 |
|
|
{
|
| 398 |
|
|
if (containsExtendedSQL) {
|
| 399 |
|
|
return true;
|
| 400 |
|
|
} else {
|
| 401 |
|
|
return false;
|
| 402 |
|
|
}
|
| 403 |
|
|
}
|
| 404 |
745
|
jones
|
|
| 405 |
3308
|
tao
|
|
| 406 |
2067
|
jones
|
/**
|
| 407 |
|
|
* Accessor method to return the identifier of this Query
|
| 408 |
|
|
*/
|
| 409 |
|
|
public String getIdentifier()
|
| 410 |
|
|
{
|
| 411 |
|
|
return meta_file_id;
|
| 412 |
|
|
}
|
| 413 |
155
|
jones
|
|
| 414 |
2067
|
jones
|
/**
|
| 415 |
|
|
* method to set the identifier of this query
|
| 416 |
|
|
*/
|
| 417 |
|
|
public void setIdentifier(String id)
|
| 418 |
|
|
{
|
| 419 |
|
|
this.meta_file_id = id;
|
| 420 |
|
|
}
|
| 421 |
745
|
jones
|
|
| 422 |
2067
|
jones
|
/**
|
| 423 |
|
|
* Accessor method to return the title of this Query
|
| 424 |
|
|
*/
|
| 425 |
|
|
public String getQueryTitle()
|
| 426 |
|
|
{
|
| 427 |
|
|
return queryTitle;
|
| 428 |
|
|
}
|
| 429 |
745
|
jones
|
|
| 430 |
2067
|
jones
|
/**
|
| 431 |
|
|
* method to set the title of this query
|
| 432 |
|
|
*/
|
| 433 |
|
|
public void setQueryTitle(String title)
|
| 434 |
|
|
{
|
| 435 |
|
|
this.queryTitle = title;
|
| 436 |
|
|
}
|
| 437 |
745
|
jones
|
|
| 438 |
2067
|
jones
|
/**
|
| 439 |
|
|
* Accessor method to return a vector of the return document types as
|
| 440 |
|
|
* defined in the <returndoctype> tag in the pathquery dtd.
|
| 441 |
|
|
*/
|
| 442 |
|
|
public Vector getReturnDocList()
|
| 443 |
|
|
{
|
| 444 |
|
|
return this.returnDocList;
|
| 445 |
|
|
}
|
| 446 |
745
|
jones
|
|
| 447 |
2067
|
jones
|
/**
|
| 448 |
|
|
* method to set the list of return docs of this query
|
| 449 |
|
|
*/
|
| 450 |
|
|
public void setReturnDocList(Vector returnDocList)
|
| 451 |
|
|
{
|
| 452 |
|
|
this.returnDocList = returnDocList;
|
| 453 |
|
|
}
|
| 454 |
745
|
jones
|
|
| 455 |
2067
|
jones
|
/**
|
| 456 |
|
|
* Accessor method to return a vector of the filter doc types as defined in
|
| 457 |
|
|
* the <filterdoctype> tag in the pathquery dtd.
|
| 458 |
|
|
*/
|
| 459 |
|
|
public Vector getFilterDocList()
|
| 460 |
|
|
{
|
| 461 |
|
|
return this.filterDocList;
|
| 462 |
|
|
}
|
| 463 |
172
|
jones
|
|
| 464 |
2067
|
jones
|
/**
|
| 465 |
|
|
* method to set the list of filter docs of this query
|
| 466 |
|
|
*/
|
| 467 |
|
|
public void setFilterDocList(Vector filterDocList)
|
| 468 |
|
|
{
|
| 469 |
|
|
this.filterDocList = filterDocList;
|
| 470 |
|
|
}
|
| 471 |
155
|
jones
|
|
| 472 |
2067
|
jones
|
/**
|
| 473 |
|
|
* Accessor method to return a vector of the extended return fields as
|
| 474 |
|
|
* defined in the <returnfield> tag in the pathquery dtd.
|
| 475 |
|
|
*/
|
| 476 |
|
|
public Vector getReturnFieldList()
|
| 477 |
|
|
{
|
| 478 |
|
|
return this.returnFieldList;
|
| 479 |
|
|
}
|
| 480 |
155
|
jones
|
|
| 481 |
2067
|
jones
|
/**
|
| 482 |
|
|
* method to set the list of fields to be returned by this query
|
| 483 |
|
|
*/
|
| 484 |
|
|
public void setReturnFieldList(Vector returnFieldList)
|
| 485 |
|
|
{
|
| 486 |
|
|
this.returnFieldList = returnFieldList;
|
| 487 |
|
|
}
|
| 488 |
155
|
jones
|
|
| 489 |
2067
|
jones
|
/**
|
| 490 |
|
|
* Accessor method to return a vector of the owner fields as defined in the
|
| 491 |
|
|
* <owner> tag in the pathquery dtd.
|
| 492 |
|
|
*/
|
| 493 |
|
|
public Vector getOwnerList()
|
| 494 |
|
|
{
|
| 495 |
|
|
return this.ownerList;
|
| 496 |
|
|
}
|
| 497 |
155
|
jones
|
|
| 498 |
2067
|
jones
|
/**
|
| 499 |
|
|
* method to set the list of owners used to constrain this query
|
| 500 |
|
|
*/
|
| 501 |
|
|
public void setOwnerList(Vector ownerList)
|
| 502 |
|
|
{
|
| 503 |
|
|
this.ownerList = ownerList;
|
| 504 |
155
|
jones
|
}
|
| 505 |
|
|
|
| 506 |
2067
|
jones
|
/**
|
| 507 |
|
|
* get the QueryGroup used to express query constraints
|
| 508 |
|
|
*/
|
| 509 |
|
|
public QueryGroup getQueryGroup()
|
| 510 |
|
|
{
|
| 511 |
|
|
return query;
|
| 512 |
158
|
jones
|
}
|
| 513 |
155
|
jones
|
|
| 514 |
2067
|
jones
|
/**
|
| 515 |
|
|
* set the querygroup
|
| 516 |
|
|
*/
|
| 517 |
|
|
public void setQueryGroup(QueryGroup group)
|
| 518 |
|
|
{
|
| 519 |
|
|
query = group;
|
| 520 |
158
|
jones
|
}
|
| 521 |
|
|
|
| 522 |
2067
|
jones
|
/**
|
| 523 |
|
|
* set if this query sepcification has extendQuery(has return doc type or
|
| 524 |
|
|
* not)
|
| 525 |
|
|
*/
|
| 526 |
|
|
public void setContainsExtenedSQL(boolean hasExtenedQuery)
|
| 527 |
|
|
{
|
| 528 |
|
|
containsExtendedSQL = hasExtenedQuery;
|
| 529 |
|
|
}
|
| 530 |
158
|
jones
|
|
| 531 |
2067
|
jones
|
/**
|
| 532 |
|
|
* Set up the SAX parser for reading the XML serialized query
|
| 533 |
|
|
*/
|
| 534 |
|
|
private XMLReader initializeParser()
|
| 535 |
|
|
{
|
| 536 |
|
|
XMLReader parser = null;
|
| 537 |
|
|
|
| 538 |
|
|
// Set up the SAX document handlers for parsing
|
| 539 |
|
|
try {
|
| 540 |
|
|
|
| 541 |
|
|
// Get an instance of the parser
|
| 542 |
|
|
parser = XMLReaderFactory.createXMLReader(parserName);
|
| 543 |
|
|
|
| 544 |
|
|
// Set the ContentHandler to this instance
|
| 545 |
|
|
parser.setContentHandler(this);
|
| 546 |
|
|
|
| 547 |
|
|
// Set the error Handler to this instance
|
| 548 |
|
|
parser.setErrorHandler(this);
|
| 549 |
|
|
|
| 550 |
|
|
} catch (Exception e) {
|
| 551 |
5311
|
daigle
|
logMetacat.error("QuerySpecification.getAccessQuery - Error: " + e.getMessage());
|
| 552 |
2067
|
jones
|
}
|
| 553 |
|
|
|
| 554 |
|
|
return parser;
|
| 555 |
1833
|
tao
|
}
|
| 556 |
170
|
jones
|
|
| 557 |
2067
|
jones
|
/**
|
| 558 |
|
|
* callback method used by the SAX Parser when the start tag of an element
|
| 559 |
|
|
* is detected. Used in this context to parse and store the query
|
| 560 |
|
|
* information in class variables.
|
| 561 |
|
|
*/
|
| 562 |
|
|
public void startElement(String uri, String localName, String qName,
|
| 563 |
|
|
Attributes atts) throws SAXException
|
| 564 |
|
|
{
|
| 565 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.startElement - start element " + localName);
|
| 566 |
2067
|
jones
|
BasicNode currentNode = new BasicNode(localName);
|
| 567 |
3766
|
tao
|
//write element name into xml buffer.
|
| 568 |
|
|
xml.append("<");
|
| 569 |
|
|
xml.append(localName);
|
| 570 |
2067
|
jones
|
// add attributes to BasicNode here
|
| 571 |
|
|
if (atts != null) {
|
| 572 |
|
|
int len = atts.getLength();
|
| 573 |
|
|
for (int i = 0; i < len; i++) {
|
| 574 |
|
|
currentNode
|
| 575 |
|
|
.setAttribute(atts.getLocalName(i), atts.getValue(i));
|
| 576 |
3766
|
tao
|
xml.append(" ");
|
| 577 |
|
|
xml.append(atts.getLocalName(i));
|
| 578 |
|
|
xml.append("=\"");
|
| 579 |
|
|
xml.append(atts.getValue(i));
|
| 580 |
|
|
xml.append("\"");
|
| 581 |
2067
|
jones
|
}
|
| 582 |
|
|
}
|
| 583 |
3766
|
tao
|
xml.append(">");
|
| 584 |
170
|
jones
|
|
| 585 |
2067
|
jones
|
elementStack.push(currentNode);
|
| 586 |
|
|
if (currentNode.getTagName().equals("querygroup")) {
|
| 587 |
|
|
QueryGroup currentGroup = new QueryGroup(currentNode
|
| 588 |
|
|
.getAttribute("operator"));
|
| 589 |
|
|
if (query == null) {
|
| 590 |
|
|
query = currentGroup;
|
| 591 |
|
|
} else {
|
| 592 |
|
|
QueryGroup parentGroup = (QueryGroup) queryStack.peek();
|
| 593 |
|
|
parentGroup.addChild(currentGroup);
|
| 594 |
|
|
}
|
| 595 |
|
|
queryStack.push(currentGroup);
|
| 596 |
|
|
}
|
| 597 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.startElement - ending startElement " + localName);
|
| 598 |
2067
|
jones
|
}
|
| 599 |
172
|
jones
|
|
| 600 |
2067
|
jones
|
/**
|
| 601 |
|
|
* callback method used by the SAX Parser when the end tag of an element is
|
| 602 |
|
|
* detected. Used in this context to parse and store the query information
|
| 603 |
|
|
* in class variables.
|
| 604 |
|
|
*/
|
| 605 |
|
|
public void endElement(String uri, String localName, String qName)
|
| 606 |
|
|
throws SAXException
|
| 607 |
|
|
{
|
| 608 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.endElement - endElement "+localName);
|
| 609 |
2067
|
jones
|
BasicNode leaving = (BasicNode) elementStack.pop();
|
| 610 |
|
|
if (leaving.getTagName().equals("queryterm")) {
|
| 611 |
|
|
boolean isCaseSensitive = (new Boolean(leaving
|
| 612 |
|
|
.getAttribute("casesensitive"))).booleanValue();
|
| 613 |
|
|
QueryTerm currentTerm = null;
|
| 614 |
|
|
if (currentPathexpr == null) {
|
| 615 |
|
|
currentTerm = new QueryTerm(isCaseSensitive, leaving
|
| 616 |
|
|
.getAttribute("searchmode"), currentValue);
|
| 617 |
|
|
} else {
|
| 618 |
|
|
currentTerm = new QueryTerm(isCaseSensitive, leaving
|
| 619 |
|
|
.getAttribute("searchmode"), currentValue,
|
| 620 |
|
|
currentPathexpr);
|
| 621 |
|
|
}
|
| 622 |
|
|
QueryGroup currentGroup = (QueryGroup) queryStack.peek();
|
| 623 |
|
|
currentGroup.addChild(currentTerm);
|
| 624 |
|
|
currentValue = null;
|
| 625 |
|
|
currentPathexpr = null;
|
| 626 |
|
|
} else if (leaving.getTagName().equals("querygroup")) {
|
| 627 |
|
|
QueryGroup leavingGroup = (QueryGroup) queryStack.pop();
|
| 628 |
2093
|
tao
|
} else if (leaving.getTagName().equals("meta_file_id")) {
|
| 629 |
|
|
meta_file_id = textBuffer.toString().trim();
|
| 630 |
|
|
} else if (leaving.getTagName().equals("querytitle")) {
|
| 631 |
|
|
queryTitle = textBuffer.toString().trim();
|
| 632 |
|
|
} else if (leaving.getTagName().equals("value")) {
|
| 633 |
|
|
currentValue = textBuffer.toString().trim();
|
| 634 |
4698
|
daigle
|
currentValue = MetacatUtil.normalize(currentValue);
|
| 635 |
2093
|
tao
|
} else if (leaving.getTagName().equals("pathexpr")) {
|
| 636 |
|
|
currentPathexpr = textBuffer.toString().trim();
|
| 637 |
|
|
} else if (leaving.getTagName().equals("returndoctype")) {
|
| 638 |
|
|
returnDocList.add(textBuffer.toString().trim());
|
| 639 |
|
|
} else if (leaving.getTagName().equals("filterdoctype")) {
|
| 640 |
|
|
filterDocList.add(textBuffer.toString().trim());
|
| 641 |
|
|
} else if (leaving.getTagName().equals("returnfield")) {
|
| 642 |
|
|
handleReturnField(textBuffer.toString().trim());
|
| 643 |
|
|
} else if (leaving.getTagName().equals("filterdoctype")) {
|
| 644 |
|
|
filterDocList.add(textBuffer.toString().trim());
|
| 645 |
|
|
} else if (leaving.getTagName().equals("owner")) {
|
| 646 |
|
|
ownerList.add(textBuffer.toString().trim());
|
| 647 |
172
|
jones
|
}
|
| 648 |
3766
|
tao
|
String normalizedXML = textBuffer.toString().trim();
|
| 649 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.endElement - before normalize: " + normalizedXML);
|
| 650 |
4698
|
daigle
|
normalizedXML = MetacatUtil.normalize(normalizedXML);
|
| 651 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.endElement - after normalize " + normalizedXML);
|
| 652 |
3766
|
tao
|
xml.append(normalizedXML);
|
| 653 |
|
|
xml.append("</");
|
| 654 |
|
|
xml.append(localName);
|
| 655 |
|
|
xml.append(">");
|
| 656 |
2093
|
tao
|
//rest textBuffer
|
| 657 |
|
|
textBuffer = new StringBuffer();
|
| 658 |
|
|
|
| 659 |
172
|
jones
|
}
|
| 660 |
3766
|
tao
|
|
| 661 |
|
|
/**
|
| 662 |
|
|
* Gets normailized query string in xml format, which can be transformed
|
| 663 |
|
|
* to html
|
| 664 |
|
|
*/
|
| 665 |
|
|
public String getNormalizedXMLQuery()
|
| 666 |
|
|
{
|
| 667 |
|
|
//System.out.println("normailized xml \n"+xml.toString());
|
| 668 |
|
|
return xml.toString();
|
| 669 |
|
|
}
|
| 670 |
|
|
|
| 671 |
743
|
jones
|
|
| 672 |
2067
|
jones
|
/**
|
| 673 |
|
|
* callback method used by the SAX Parser when the text sequences of an xml
|
| 674 |
|
|
* stream are detected. Used in this context to parse and store the query
|
| 675 |
|
|
* information in class variables.
|
| 676 |
|
|
*/
|
| 677 |
|
|
public void characters(char ch[], int start, int length)
|
| 678 |
|
|
{
|
| 679 |
2093
|
tao
|
// buffer all text nodes for same element. This is for text was splited
|
| 680 |
|
|
// into different nodes
|
| 681 |
3766
|
tao
|
String text = new String(ch, start, length);
|
| 682 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.characters - the text in characters " + text);
|
| 683 |
3766
|
tao
|
textBuffer.append(text);
|
| 684 |
2067
|
jones
|
|
| 685 |
|
|
}
|
| 686 |
|
|
|
| 687 |
3358
|
tao
|
/**
|
| 688 |
|
|
* Method to handle return field. It will be callied in ecogrid part
|
| 689 |
|
|
* @param inputString
|
| 690 |
|
|
*/
|
| 691 |
|
|
public void handleReturnField(String inputString)
|
| 692 |
3235
|
sledge
|
{
|
| 693 |
|
|
int attributePos = inputString.indexOf(ATTRIBUTESYMBOL);
|
| 694 |
|
|
int predicateStart = -1;
|
| 695 |
|
|
int predicateEnd;
|
| 696 |
|
|
boolean hasPredicate = false;
|
| 697 |
535
|
jones
|
|
| 698 |
3235
|
sledge
|
while (true)
|
| 699 |
|
|
{
|
| 700 |
|
|
predicateStart = inputString.indexOf(PREDICATE_START, predicateStart + 1);
|
| 701 |
|
|
|
| 702 |
|
|
if (attributePos == -1)
|
| 703 |
|
|
break;
|
| 704 |
|
|
|
| 705 |
|
|
if (predicateStart == -1)
|
| 706 |
|
|
break;
|
| 707 |
|
|
|
| 708 |
|
|
hasPredicate = true;
|
| 709 |
|
|
|
| 710 |
|
|
if (attributePos < predicateStart)
|
| 711 |
|
|
break;
|
| 712 |
|
|
|
| 713 |
|
|
predicateEnd = inputString.indexOf(PREDICATE_END, predicateStart);
|
| 714 |
|
|
|
| 715 |
|
|
if (predicateEnd == -1)
|
| 716 |
|
|
{
|
| 717 |
5311
|
daigle
|
logMetacat.warn("QuerySpecification.handleReturnField - Invalid path: " + inputString);
|
| 718 |
3235
|
sledge
|
return;
|
| 719 |
|
|
}
|
| 720 |
|
|
|
| 721 |
|
|
while (attributePos < predicateEnd)
|
| 722 |
|
|
{
|
| 723 |
|
|
attributePos = inputString.indexOf(ATTRIBUTESYMBOL, attributePos + 1);
|
| 724 |
|
|
|
| 725 |
|
|
if (attributePos == -1)
|
| 726 |
|
|
break;
|
| 727 |
|
|
}
|
| 728 |
|
|
}
|
| 729 |
|
|
|
| 730 |
|
|
if (hasPredicate)
|
| 731 |
3769
|
tao
|
{
|
| 732 |
3235
|
sledge
|
containsPredicates = true;
|
| 733 |
3769
|
tao
|
returnFieldListWithPredicates.add(inputString);
|
| 734 |
|
|
}
|
| 735 |
3235
|
sledge
|
|
| 736 |
|
|
containsExtendedSQL = true;
|
| 737 |
5311
|
daigle
|
|
| 738 |
3769
|
tao
|
// no attribute value will be returned
|
| 739 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.handleReturnField - there are no attributes in the XPATH statement" );
|
| 740 |
|
|
returnFieldList.add(inputString);
|
| 741 |
3235
|
sledge
|
}
|
| 742 |
|
|
|
| 743 |
2067
|
jones
|
/**
|
| 744 |
|
|
* create a SQL serialization of the query that this instance represents
|
| 745 |
|
|
*/
|
| 746 |
6602
|
leinfelder
|
public String printSQL(boolean useXMLIndex, List<Object> parameterValues)
|
| 747 |
2067
|
jones
|
{
|
| 748 |
|
|
|
| 749 |
|
|
StringBuffer self = new StringBuffer();
|
| 750 |
2366
|
sgarg
|
StringBuffer queryString = new StringBuffer();
|
| 751 |
2067
|
jones
|
|
| 752 |
7417
|
leinfelder
|
queryString.append("SELECT xml_documents.docid, identifier.guid, docname, doctype, date_created, date_updated, xml_documents.rev ");
|
| 753 |
7407
|
leinfelder
|
queryString.append("FROM xml_documents, identifier ");
|
| 754 |
|
|
queryString.append("WHERE xml_documents.docid = identifier.docid AND xml_documents.rev = identifier.rev AND");
|
| 755 |
2067
|
jones
|
|
| 756 |
2366
|
sgarg
|
// Get the query from the QueryGroup and check
|
| 757 |
|
|
// if no query has been returned
|
| 758 |
5204
|
daigle
|
String queryFromQueryGroup;
|
| 759 |
6602
|
leinfelder
|
// keep track of the values we add as prepared statement question marks (?)
|
| 760 |
|
|
List<Object> groupValues = new ArrayList<Object>();
|
| 761 |
5204
|
daigle
|
if (query != null) {
|
| 762 |
6602
|
leinfelder
|
queryFromQueryGroup = query.printSQL(useXMLIndex, groupValues);
|
| 763 |
5204
|
daigle
|
} else {
|
| 764 |
|
|
queryFromQueryGroup = "";
|
| 765 |
|
|
}
|
| 766 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.printSQL - Query : " + queryFromQueryGroup);
|
| 767 |
2677
|
sgarg
|
|
| 768 |
2373
|
sgarg
|
if(!queryFromQueryGroup.trim().equals("")){
|
| 769 |
7407
|
leinfelder
|
self.append(" xml_documents.docid IN (");
|
| 770 |
2373
|
sgarg
|
self.append(queryFromQueryGroup);
|
| 771 |
2366
|
sgarg
|
self.append(") ");
|
| 772 |
6602
|
leinfelder
|
// add the parameter values
|
| 773 |
|
|
parameterValues.addAll(groupValues);
|
| 774 |
2366
|
sgarg
|
}
|
| 775 |
2067
|
jones
|
|
| 776 |
|
|
// Add SQL to filter for doctypes requested in the query
|
| 777 |
|
|
// This is an implicit OR for the list of doctypes. Only doctypes in
|
| 778 |
|
|
// this
|
| 779 |
|
|
// list will be searched if the tag is present
|
| 780 |
|
|
if (!filterDocList.isEmpty()) {
|
| 781 |
|
|
boolean firstdoctype = true;
|
| 782 |
2366
|
sgarg
|
|
| 783 |
7495
|
leinfelder
|
if (!self.toString().equals("")){
|
| 784 |
|
|
self.append(" AND ");
|
| 785 |
2366
|
sgarg
|
}
|
| 786 |
7495
|
leinfelder
|
self.append(" (");
|
| 787 |
2366
|
sgarg
|
|
| 788 |
2067
|
jones
|
Enumeration en = filterDocList.elements();
|
| 789 |
|
|
while (en.hasMoreElements()) {
|
| 790 |
|
|
String currentDoctype = (String) en.nextElement();
|
| 791 |
|
|
if (firstdoctype) {
|
| 792 |
|
|
firstdoctype = false;
|
| 793 |
7495
|
leinfelder
|
self.append(" doctype = ?");
|
| 794 |
2067
|
jones
|
} else {
|
| 795 |
7495
|
leinfelder
|
self.append(" OR doctype = ?");
|
| 796 |
2067
|
jones
|
}
|
| 797 |
7495
|
leinfelder
|
parameterValues.add(currentDoctype);
|
| 798 |
|
|
|
| 799 |
2067
|
jones
|
}
|
| 800 |
2366
|
sgarg
|
|
| 801 |
7495
|
leinfelder
|
self.append(") ");
|
| 802 |
|
|
|
| 803 |
535
|
jones
|
}
|
| 804 |
2067
|
jones
|
|
| 805 |
|
|
// Add SQL to filter for owners requested in the query
|
| 806 |
|
|
// This is an implicit OR for the list of owners
|
| 807 |
|
|
if (!ownerList.isEmpty()) {
|
| 808 |
|
|
boolean first = true;
|
| 809 |
2366
|
sgarg
|
|
| 810 |
7495
|
leinfelder
|
if (!self.toString().equals("")){
|
| 811 |
|
|
self.append(" AND ");
|
| 812 |
2366
|
sgarg
|
}
|
| 813 |
7495
|
leinfelder
|
self.append(" (");
|
| 814 |
|
|
|
| 815 |
2366
|
sgarg
|
|
| 816 |
2067
|
jones
|
Enumeration en = ownerList.elements();
|
| 817 |
|
|
while (en.hasMoreElements()) {
|
| 818 |
|
|
String current = (String) en.nextElement();
|
| 819 |
|
|
if (current != null) {
|
| 820 |
|
|
current = current.toLowerCase();
|
| 821 |
|
|
}
|
| 822 |
|
|
if (first) {
|
| 823 |
|
|
first = false;
|
| 824 |
7495
|
leinfelder
|
self.append(" lower(user_owner) = ?");
|
| 825 |
2067
|
jones
|
} else {
|
| 826 |
7495
|
leinfelder
|
self.append(" OR lower(user_owner) = ?");
|
| 827 |
2067
|
jones
|
}
|
| 828 |
7495
|
leinfelder
|
parameterValues.add(current);
|
| 829 |
2067
|
jones
|
}
|
| 830 |
2366
|
sgarg
|
|
| 831 |
7495
|
leinfelder
|
self.append(") ");
|
| 832 |
|
|
|
| 833 |
2067
|
jones
|
}
|
| 834 |
|
|
|
| 835 |
|
|
// if there is only one percentage search item, this query is a
|
| 836 |
5311
|
daigle
|
// percentage search query
|
| 837 |
|
|
if (query != null) {
|
| 838 |
|
|
logMetacat.info("QuerySpecification.printSQL - percentage number: " + query.getPercentageSymbolCount());
|
| 839 |
|
|
if (query.getPercentageSymbolCount() == 1) {
|
| 840 |
|
|
logMetacat.info("QuerySpecification.printSQL - It is a percentage search");
|
| 841 |
|
|
percentageSearch = true;
|
| 842 |
|
|
}
|
| 843 |
2067
|
jones
|
}
|
| 844 |
|
|
|
| 845 |
2366
|
sgarg
|
queryString.append(self.toString());
|
| 846 |
|
|
return queryString.toString();
|
| 847 |
535
|
jones
|
}
|
| 848 |
2067
|
jones
|
|
| 849 |
3355
|
tao
|
|
| 850 |
2067
|
jones
|
|
| 851 |
|
|
/**
|
| 852 |
|
|
* This method prints sql based upon the <returnfield> tag in the
|
| 853 |
2069
|
jones
|
* pathquery document. This allows for customization of the returned fields.
|
| 854 |
2093
|
tao
|
* If the boolean useXMLIndex paramter is false, it uses a recursive query on
|
| 855 |
|
|
* xml_nodes to find the fields to be included by their path expression, and
|
| 856 |
2069
|
jones
|
* avoids the use of the xml_index table.
|
| 857 |
2093
|
tao
|
*
|
| 858 |
2073
|
jones
|
* @param doclist the list of document ids to search
|
| 859 |
2093
|
tao
|
* @param unaccessableNodePair the node pairs (start id and end id) which
|
| 860 |
2073
|
jones
|
* this user should not access
|
| 861 |
2093
|
tao
|
* @param useXMLIndex a boolean flag indicating whether to search using
|
| 862 |
2073
|
jones
|
* xml_index
|
| 863 |
2069
|
jones
|
*/
|
| 864 |
6734
|
leinfelder
|
public String printExtendedSQL(String doclist, boolean useXMLIndex, List<Object> allValues, List<Object> docListValues)
|
| 865 |
2069
|
jones
|
{
|
| 866 |
6602
|
leinfelder
|
|
| 867 |
|
|
// keep track of the values we add as prepared statement question marks (?)
|
| 868 |
|
|
//List<Object> allValues = new ArrayList<Object>();
|
| 869 |
|
|
|
| 870 |
|
|
if (useXMLIndex && !containsPredicates) {
|
| 871 |
|
|
// keep track of the values we add as prepared statement question marks (?)
|
| 872 |
|
|
List<Object> parameterValues = new ArrayList<Object>();
|
| 873 |
6734
|
leinfelder
|
String query = printExtendedSQL(doclist, parameterValues, docListValues);
|
| 874 |
6602
|
leinfelder
|
// add parameter values to our running list
|
| 875 |
|
|
allValues.addAll(parameterValues);
|
| 876 |
|
|
return query;
|
| 877 |
3235
|
sledge
|
}
|
| 878 |
|
|
else
|
| 879 |
|
|
{
|
| 880 |
2069
|
jones
|
StringBuffer self = new StringBuffer();
|
| 881 |
|
|
boolean firstfield = true;
|
| 882 |
6602
|
leinfelder
|
// keep track of the values we add as prepared statement question marks (?)
|
| 883 |
|
|
List<Object> parameterValues = new ArrayList<Object>();
|
| 884 |
3769
|
tao
|
// first part comes from fields without predicates
|
| 885 |
6734
|
leinfelder
|
String queryFromWithoutPrecidates = printExtendedSQL(doclist, parameterValues, docListValues);
|
| 886 |
6602
|
leinfelder
|
// add parameter values to our running list
|
| 887 |
|
|
allValues.addAll(parameterValues);
|
| 888 |
|
|
if (queryFromWithoutPrecidates != null) {
|
| 889 |
3769
|
tao
|
// it has return fields without predicate
|
| 890 |
|
|
self.append(queryFromWithoutPrecidates);
|
| 891 |
|
|
firstfield = false;
|
| 892 |
6602
|
leinfelder
|
}
|
| 893 |
2069
|
jones
|
//put the returnfields into the query
|
| 894 |
|
|
//the for loop allows for multiple fields
|
| 895 |
3769
|
tao
|
for (int i = 0; i < returnFieldListWithPredicates.size(); i++)
|
| 896 |
3235
|
sledge
|
{
|
| 897 |
|
|
if (firstfield)
|
| 898 |
|
|
{
|
| 899 |
2069
|
jones
|
firstfield = false;
|
| 900 |
3235
|
sledge
|
}
|
| 901 |
|
|
else
|
| 902 |
|
|
{
|
| 903 |
2093
|
tao
|
self.append(" UNION ");
|
| 904 |
2069
|
jones
|
}
|
| 905 |
3769
|
tao
|
String path = (String) returnFieldListWithPredicates.elementAt(i);
|
| 906 |
6734
|
leinfelder
|
//path = path.replaceAll("'", "''");
|
| 907 |
6602
|
leinfelder
|
// TODO: can we use prepared statements for this?
|
| 908 |
|
|
allValues.add(path);
|
| 909 |
2069
|
jones
|
self.append("select xml_nodes.docid, ");
|
| 910 |
6602
|
leinfelder
|
self.append("? as path, ");
|
| 911 |
3634
|
leinfelder
|
self.append("xml_nodes.nodedata, ");
|
| 912 |
|
|
self.append("xml_nodes.parentnodeid, ");
|
| 913 |
|
|
self.append("xml_nodes.nodetype ");
|
| 914 |
3771
|
tao
|
//self.append("from xml_nodes, xml_documents ");
|
| 915 |
|
|
self.append("from xml_nodes ");
|
| 916 |
|
|
self.append("where ");
|
| 917 |
6602
|
leinfelder
|
// keep track of the values we add as prepared statement question marks (?)
|
| 918 |
|
|
List<Object> nestedParameterValues = new ArrayList<Object>();
|
| 919 |
|
|
String nestedQuery = QueryTerm.useNestedStatements(path, nestedParameterValues);
|
| 920 |
|
|
self.append(nestedQuery);
|
| 921 |
|
|
// add to the running total
|
| 922 |
|
|
allValues.addAll(nestedParameterValues);
|
| 923 |
2093
|
tao
|
|
| 924 |
2069
|
jones
|
self.append(" AND xml_nodes.docid in (");
|
| 925 |
|
|
self.append(doclist);
|
| 926 |
6734
|
leinfelder
|
allValues.addAll(docListValues);
|
| 927 |
|
|
|
| 928 |
3771
|
tao
|
if (returnFieldIsAttribute(path))
|
| 929 |
|
|
{
|
| 930 |
|
|
self.append(")");
|
| 931 |
|
|
}
|
| 932 |
|
|
else
|
| 933 |
|
|
{
|
| 934 |
|
|
self.append(") AND xml_nodes.nodetype = 'TEXT'");
|
| 935 |
|
|
}
|
| 936 |
|
|
//self.append(" AND xml_nodes.rootnodeid = xml_documents.rootnodeid");
|
| 937 |
2093
|
tao
|
|
| 938 |
3248
|
tao
|
//addAccessRestrictionSQL(unaccessableNodePair, self);
|
| 939 |
2069
|
jones
|
}
|
| 940 |
|
|
|
| 941 |
|
|
return self.toString();
|
| 942 |
|
|
}
|
| 943 |
|
|
}
|
| 944 |
3771
|
tao
|
|
| 945 |
|
|
/*
|
| 946 |
|
|
* Determines the returnfield is an attribute of not.
|
| 947 |
|
|
* For given returnfield, this programm will cut the part of path after last slash.
|
| 948 |
|
|
* If no slash in the path, the original string will be considered as last part.
|
| 949 |
|
|
* If first character of last part is @ it will retrun true.
|
| 950 |
|
|
*/
|
| 951 |
|
|
private boolean returnFieldIsAttribute(String path)
|
| 952 |
|
|
{
|
| 953 |
|
|
boolean isAttribute = false;
|
| 954 |
|
|
if (path != null)
|
| 955 |
|
|
{
|
| 956 |
|
|
int slashIndex = path.lastIndexOf("/");
|
| 957 |
|
|
if (slashIndex !=-1)
|
| 958 |
|
|
{
|
| 959 |
|
|
// if there is slash in the path, path should be replace by the last part
|
| 960 |
|
|
path = path.substring(slashIndex+1);
|
| 961 |
|
|
}
|
| 962 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.returnFieldIsAttribute - final path is " + path);
|
| 963 |
3771
|
tao
|
// if first of character of path is @, the path is attribute
|
| 964 |
|
|
if (path.charAt(0) == '@')
|
| 965 |
|
|
{
|
| 966 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.returnFieldIsAttribute - it is an attribute");
|
| 967 |
3771
|
tao
|
isAttribute = true;
|
| 968 |
|
|
}
|
| 969 |
|
|
}
|
| 970 |
|
|
return isAttribute;
|
| 971 |
|
|
}
|
| 972 |
2093
|
tao
|
|
| 973 |
2069
|
jones
|
/**
|
| 974 |
|
|
* This method prints sql based upon the <returnfield> tag in the
|
| 975 |
|
|
* pathquery document. This allows for customization of the returned fields.
|
| 976 |
|
|
* It uses the xml_index table and so assumes that this table has been
|
| 977 |
|
|
* built.
|
| 978 |
2093
|
tao
|
*
|
| 979 |
2073
|
jones
|
* @param doclist the list of document ids to search
|
| 980 |
2093
|
tao
|
* @param unaccessableNodePair the node pairs (start id and end id)
|
| 981 |
2073
|
jones
|
* which this user should not access
|
| 982 |
2067
|
jones
|
*/
|
| 983 |
6734
|
leinfelder
|
private String printExtendedSQL(String doclist, List<Object> values, List<Object> docListValues) {
|
| 984 |
6602
|
leinfelder
|
|
| 985 |
|
|
// keep track of the values we add as prepared statement question marks (?)
|
| 986 |
|
|
//List<Object> values = new ArrayList<Object>();
|
| 987 |
|
|
|
| 988 |
5311
|
daigle
|
logMetacat.debug("QuerySpecification.printExtendedSQL - in printExtendedSQL");
|
| 989 |
2067
|
jones
|
StringBuffer self = new StringBuffer();
|
| 990 |
6602
|
leinfelder
|
Vector<String> elementVector = new Vector<String>();
|
| 991 |
|
|
Vector<String> attributeVector = new Vector<String>();
|
| 992 |
2472
|
cjones
|
|
| 993 |
2523
|
sgarg
|
boolean usePathIndex = true;
|
| 994 |
2434
|
sgarg
|
|
| 995 |
2523
|
sgarg
|
// test if the are elements in the return fields
|
| 996 |
|
|
if ( returnFieldList.size() == 0 ) {
|
| 997 |
|
|
return null;
|
| 998 |
|
|
}
|
| 999 |
2067
|
jones
|
|
| 1000 |
2523
|
sgarg
|
for (int i = 0; i < returnFieldList.size(); i++) {
|
| 1001 |
3355
|
tao
|
String path = (String)returnFieldList.elementAt(i);
|
| 1002 |
3769
|
tao
|
// Since return fileds having preicates will be handle in another path,
|
| 1003 |
|
|
// we should skip it.
|
| 1004 |
4854
|
daigle
|
if (returnFieldListWithPredicates.contains(path)) {
|
| 1005 |
3769
|
tao
|
continue;
|
| 1006 |
|
|
}
|
| 1007 |
4854
|
daigle
|
|
| 1008 |
|
|
if (path != null && path.indexOf(ATTRIBUTESYMBOL) != -1) {
|
| 1009 |
3355
|
tao
|
attributeVector.add(path);
|
| 1010 |
4854
|
daigle
|
} else {
|
| 1011 |
3355
|
tao
|
elementVector.add(path);
|
| 1012 |
4812
|
daigle
|
}
|
| 1013 |
4854
|
daigle
|
|
| 1014 |
|
|
|
| 1015 |
4812
|
daigle
|
try {
|
| 1016 |
4854
|
daigle
|
if (!SystemUtil.getPathsForIndexing().contains(path)) {
|
| 1017 |
|
|
usePathIndex = false;
|
| 1018 |
|
|
}
|
| 1019 |
|
|
} catch (MetacatUtilException mue) {
|
| 1020 |
5311
|
daigle
|
logMetacat.warn("QuerySpecification.printExtendedSQL - Could not get index paths: " + mue.getMessage());
|
| 1021 |
4854
|
daigle
|
}
|
| 1022 |
3355
|
tao
|
|
| 1023 |
2523
|
sgarg
|
}
|
| 1024 |
3355
|
tao
|
// check if has return field
|
| 1025 |
|
|
if (elementVector.size() == 0 && attributeVector.size()==0)
|
| 1026 |
|
|
{
|
| 1027 |
|
|
return null;
|
| 1028 |
|
|
}
|
| 1029 |
2073
|
jones
|
|
| 1030 |
6602
|
leinfelder
|
if (usePathIndex){
|
| 1031 |
3646
|
leinfelder
|
self.append("select docid, path, nodedata, parentnodeid, null as nodetype ");
|
| 1032 |
6602
|
leinfelder
|
self.append("from xml_path_index where path in ( ");
|
| 1033 |
2523
|
sgarg
|
|
| 1034 |
|
|
boolean firstfield = true;
|
| 1035 |
|
|
//put the returnfields into the query
|
| 1036 |
|
|
//the for loop allows for multiple fields
|
| 1037 |
|
|
for (int i = 0; i < returnFieldList.size(); i++) {
|
| 1038 |
6146
|
leinfelder
|
String returnField = (String) returnFieldList.elementAt(i);
|
| 1039 |
|
|
// in case we have predicate conditions with quotes
|
| 1040 |
|
|
returnField = returnField.replaceAll("'", "''");
|
| 1041 |
2523
|
sgarg
|
if (firstfield) {
|
| 1042 |
|
|
firstfield = false;
|
| 1043 |
6602
|
leinfelder
|
self.append("? ");
|
| 1044 |
|
|
values.add(returnField);
|
| 1045 |
2523
|
sgarg
|
}
|
| 1046 |
|
|
else {
|
| 1047 |
6602
|
leinfelder
|
self.append(", ? ");
|
| 1048 |
|
|
values.add(returnField);
|
| 1049 |
2523
|
sgarg
|
}
|
| 1050 |
|
|
}
|
| 1051 |
|
|
self.append(") AND docid in (");
|
| 1052 |
|
|
self.append(doclist);
|
| 1053 |
6734
|
leinfelder
|
values.addAll(docListValues);
|
| 1054 |
2523
|
sgarg
|
self.append(")");
|
| 1055 |
|
|
|
| 1056 |
|
|
} else {
|
| 1057 |
|
|
self.append("select xml_nodes.docid, xml_index.path, xml_nodes.nodedata, ");
|
| 1058 |
3634
|
leinfelder
|
self.append("xml_nodes.parentnodeid, ");
|
| 1059 |
|
|
self.append("xml_nodes.nodetype ");
|
| 1060 |
3355
|
tao
|
self.append("FROM xml_index, xml_nodes WHERE (");
|
| 1061 |
|
|
|
| 1062 |
|
|
boolean firstElement = true;
|
| 1063 |
|
|
boolean firstAttribute = true;
|
| 1064 |
2523
|
sgarg
|
//put the returnfields into the query
|
| 1065 |
|
|
//the for loop allows for multiple fields
|
| 1066 |
3355
|
tao
|
if (elementVector.size() != 0)
|
| 1067 |
|
|
{
|
| 1068 |
|
|
for (int i = 0; i < elementVector.size(); i++) {
|
| 1069 |
|
|
String path = (String) elementVector.elementAt(i);
|
| 1070 |
|
|
if (firstElement) {
|
| 1071 |
|
|
firstElement = false;
|
| 1072 |
6602
|
leinfelder
|
self.append(" (xml_index.nodeid=xml_nodes.parentnodeid AND xml_index.path IN ( ");
|
| 1073 |
|
|
self.append("?");
|
| 1074 |
|
|
values.add(path);
|
| 1075 |
3355
|
tao
|
}
|
| 1076 |
|
|
else
|
| 1077 |
|
|
{
|
| 1078 |
6602
|
leinfelder
|
self.append(", ? ");
|
| 1079 |
|
|
values.add(path);
|
| 1080 |
3355
|
tao
|
}
|
| 1081 |
|
|
}
|
| 1082 |
|
|
self.append(") AND xml_nodes.nodetype = 'TEXT')");
|
| 1083 |
2523
|
sgarg
|
}
|
| 1084 |
3355
|
tao
|
|
| 1085 |
|
|
if (attributeVector.size() != 0)
|
| 1086 |
|
|
{
|
| 1087 |
|
|
for (int j=0; j<attributeVector.size(); j++)
|
| 1088 |
|
|
{
|
| 1089 |
|
|
String path = (String) attributeVector.elementAt(j);
|
| 1090 |
|
|
if (firstAttribute)
|
| 1091 |
|
|
{
|
| 1092 |
|
|
firstAttribute = false;
|
| 1093 |
|
|
if (!firstElement)
|
| 1094 |
|
|
{
|
| 1095 |
|
|
self.append(" OR ");
|
| 1096 |
|
|
}
|
| 1097 |
6602
|
leinfelder
|
self.append(" (xml_index.nodeid=xml_nodes.nodeid AND ( xml_index.path IN ( ");
|
| 1098 |
|
|
self.append("?");
|
| 1099 |
|
|
values.add(path);
|
| 1100 |
3355
|
tao
|
}
|
| 1101 |
|
|
else
|
| 1102 |
|
|
{
|
| 1103 |
6602
|
leinfelder
|
self.append(", ? ");
|
| 1104 |
|
|
values.add(path);
|
| 1105 |
3355
|
tao
|
}
|
| 1106 |
|
|
}
|
| 1107 |
|
|
self.append(") AND xml_nodes.nodetype = 'ATTRIBUTE'))");
|
| 1108 |
|
|
}
|
| 1109 |
|
|
|
| 1110 |
|
|
|
| 1111 |
2523
|
sgarg
|
self.append(") AND xml_nodes.docid in (");
|
| 1112 |
|
|
self.append(doclist);
|
| 1113 |
6734
|
leinfelder
|
values.addAll(docListValues);
|
| 1114 |
3355
|
tao
|
self.append(")");
|
| 1115 |
2523
|
sgarg
|
|
| 1116 |
|
|
}
|
| 1117 |
|
|
|
| 1118 |
|
|
return self.toString();
|
| 1119 |
2073
|
jones
|
}
|
| 1120 |
|
|
|
| 1121 |
2419
|
sgarg
|
|
| 1122 |
2073
|
jones
|
/**
|
| 1123 |
2419
|
sgarg
|
* Method to return a String generated after sorting the returnFieldList
|
| 1124 |
|
|
* Vector
|
| 1125 |
|
|
*/
|
| 1126 |
|
|
public String getSortedReturnFieldString(){
|
| 1127 |
|
|
String returnFields = "";
|
| 1128 |
|
|
|
| 1129 |
|
|
// Create a temporary vector and copy returnFieldList into it
|
| 1130 |
|
|
Vector tempVector = new Vector();
|
| 1131 |
2464
|
sgarg
|
|
| 1132 |
2419
|
sgarg
|
Iterator it = returnFieldList.iterator();
|
| 1133 |
|
|
while(it.hasNext()){
|
| 1134 |
|
|
tempVector.add(it.next());
|
| 1135 |
|
|
}
|
| 1136 |
|
|
|
| 1137 |
3308
|
tao
|
/*Enumeration attEnum = attributeReturnList.elements();
|
| 1138 |
2464
|
sgarg
|
while(attEnum.hasMoreElements()){
|
| 1139 |
|
|
Iterator tempIt = ((Vector)attEnum.nextElement()).iterator();
|
| 1140 |
|
|
String rfield = "";
|
| 1141 |
|
|
if(tempIt.hasNext()){
|
| 1142 |
|
|
String element = (String)tempIt.next();
|
| 1143 |
2474
|
sgarg
|
if(element != null) {
|
| 1144 |
|
|
rfield +=element;
|
| 1145 |
2464
|
sgarg
|
}
|
| 1146 |
|
|
}
|
| 1147 |
|
|
if(tempIt.hasNext()){
|
| 1148 |
|
|
String attribute = (String)tempIt.next();
|
| 1149 |
2474
|
sgarg
|
if(attribute != null) {
|
| 1150 |
|
|
rfield = rfield + "@" + attribute;
|
| 1151 |
2464
|
sgarg
|
}
|
| 1152 |
|
|
}
|
| 1153 |
|
|
tempVector.add(rfield);
|
| 1154 |
3308
|
tao
|
}*/
|
| 1155 |
2464
|
sgarg
|
|
| 1156 |
2419
|
sgarg
|
// Sort the temporary vector
|
| 1157 |
|
|
java.util.Collections.sort(tempVector);
|
| 1158 |
|
|
|
| 1159 |
|
|
// Generate the string and return it
|
| 1160 |
|
|
it = tempVector.iterator();
|
| 1161 |
|
|
while(it.hasNext()){
|
| 1162 |
|
|
returnFields = returnFields + it.next() + "|";
|
| 1163 |
|
|
}
|
| 1164 |
|
|
return returnFields;
|
| 1165 |
|
|
}
|
| 1166 |
|
|
|
| 1167 |
|
|
|
| 1168 |
3355
|
tao
|
|
| 1169 |
2067
|
jones
|
|
| 1170 |
2074
|
jones
|
|
| 1171 |
2067
|
jones
|
public static String printRelationSQL(String docid)
|
| 1172 |
1354
|
tao
|
{
|
| 1173 |
2067
|
jones
|
StringBuffer self = new StringBuffer();
|
| 1174 |
|
|
self.append("select subject, relationship, object, subdoctype, ");
|
| 1175 |
|
|
self.append("objdoctype from xml_relation ");
|
| 1176 |
|
|
self.append("where docid like '").append(docid).append("'");
|
| 1177 |
|
|
return self.toString();
|
| 1178 |
1354
|
tao
|
}
|
| 1179 |
2066
|
jones
|
|
| 1180 |
2067
|
jones
|
public static String printGetDocByDoctypeSQL(String docid)
|
| 1181 |
|
|
{
|
| 1182 |
|
|
StringBuffer self = new StringBuffer();
|
| 1183 |
465
|
berkley
|
|
| 1184 |
2067
|
jones
|
self.append("SELECT docid,docname,doctype,");
|
| 1185 |
|
|
self.append("date_created, date_updated ");
|
| 1186 |
|
|
self.append("FROM xml_documents WHERE docid IN (");
|
| 1187 |
|
|
self.append(docid).append(")");
|
| 1188 |
|
|
return self.toString();
|
| 1189 |
|
|
}
|
| 1190 |
159
|
jones
|
|
| 1191 |
2067
|
jones
|
/**
|
| 1192 |
|
|
* create a String description of the query that this instance represents.
|
| 1193 |
|
|
* This should become a way to get the XML serialization of the query.
|
| 1194 |
|
|
*/
|
| 1195 |
|
|
public String toString()
|
| 1196 |
|
|
{
|
| 1197 |
|
|
return "meta_file_id=" + meta_file_id + "\n" + query;
|
| 1198 |
|
|
//DOCTITLE attr cleared from the db
|
| 1199 |
|
|
//return "meta_file_id=" + meta_file_id + "\n" +
|
| 1200 |
|
|
//"querytitle=" + querytitle + "\n" + query;
|
| 1201 |
|
|
}
|
| 1202 |
|
|
|
| 1203 |
2073
|
jones
|
/** A method to get rid of attribute part in path expression */
|
| 1204 |
2067
|
jones
|
public static String newPathExpressionWithOutAttribute(String pathExpression)
|
| 1205 |
|
|
{
|
| 1206 |
|
|
if (pathExpression == null) { return null; }
|
| 1207 |
|
|
int index = pathExpression.lastIndexOf(ATTRIBUTESYMBOL);
|
| 1208 |
|
|
String newExpression = null;
|
| 1209 |
2458
|
cjones
|
if (index != 0) {
|
| 1210 |
2067
|
jones
|
newExpression = pathExpression.substring(0, index - 1);
|
| 1211 |
|
|
}
|
| 1212 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.newPathExpressionWithOutAttribute - The path expression without attributes: "
|
| 1213 |
2663
|
sgarg
|
+ newExpression);
|
| 1214 |
2067
|
jones
|
return newExpression;
|
| 1215 |
|
|
}
|
| 1216 |
|
|
|
| 1217 |
2073
|
jones
|
/** A method to get attribute name from path */
|
| 1218 |
2067
|
jones
|
public static String getAttributeName(String path)
|
| 1219 |
|
|
{
|
| 1220 |
|
|
if (path == null) { return null; }
|
| 1221 |
|
|
int index = path.lastIndexOf(ATTRIBUTESYMBOL);
|
| 1222 |
|
|
int size = path.length();
|
| 1223 |
|
|
String attributeName = null;
|
| 1224 |
|
|
if (index != 1) {
|
| 1225 |
|
|
attributeName = path.substring(index + 1, size);
|
| 1226 |
|
|
}
|
| 1227 |
5311
|
daigle
|
logMetacat.info("QuerySpecification.getAttributeName - The attirbute name from path: " + attributeName);
|
| 1228 |
2067
|
jones
|
return attributeName;
|
| 1229 |
|
|
}
|
| 1230 |
|
|
|
| 1231 |
155
|
jones
|
}
|