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1929
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brooke
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#!/usr/bin/perl
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#
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# '$RCSfile$'
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# Copyright: 2000 Regents of the University of California
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#
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# '$Author$'
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# '$Date$'
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# '$Revision$'
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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#
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#
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# This is a CGI application for inserting metadata documents into
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# the Metacat database. It utilizes the Metacat.pm module for most work.
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# In this script, we process the form fields passed in from a POST, insert a
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# metadata document and an ACL document.
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use Metacat;
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use AppConfig qw(:expand :argcount);
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use XML::LibXML;
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use XML::LibXSLT;
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use Template;
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use Net::LDAP;
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use Net::SMTP;
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use CGI qw/:standard :html3/;
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use strict;
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# Global configuration paramters
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#my $cfgdir = "@install-dir@";
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#my $cfgdir = "/usr/local/devtools/tomcat/webapps/knb/style/skins";
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my $cfgdir = "@install-dir@@style-skins-relpath@";
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my $tmpdir = "@temp-dir@";
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my $templatesdir = "@install-dir@@style-common-relpath@/templates";
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my $now = time;
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my $xslConvDir = "$cfgdir/lib/style/";
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# Import all of the HTML form fields as variables
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import_names('FORM');
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# Set up the hash for returning data to the HTML templates
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my $templateVars = { 'status' => 'success' };
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my $error = 0;
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my @errorMessages;
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# create a new AppConfig object and load our config parameters
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# note that this requires the form submission to have a "cfg" paramter
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# to determine which config file to load
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my $config = AppConfig->new({
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GLOBAL => { ARGCOUNT => ARGCOUNT_ONE, } });
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$config->define("metacatUrl");
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$config->define("username");
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$config->define("password");
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$config->define("ldapUrl");
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$config->define("defaultScope");
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$config->define("organization");
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$config->define("orgabbrev");
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$config->define("orgurl");
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$config->define("accesspubid");
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$config->define("accesssysid");
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$config->define("datasetpubid");
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$config->define("datasetsysid");
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$config->define("mailhost");
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$config->define("sender");
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$config->define("recipient");
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$config->define("adminname");
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1973
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jones
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if ($FORM::cfg eq 'nceas') {
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$config->define("nceas_db");
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$config->define("nceas_db_user");
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$config->define("nceas_db_password");
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}
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1929
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brooke
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$config->define("responseTemplate", { DEFAULT => 'crap.tmpl'} );
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$config->define("entryFormTemplate", { DEFAULT => 'crap.tmpl'} );
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$config->define("guideTemplate", { DEFAULT => 'crap.tmpl'} );
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$config->define("confirmDataTemplate", { DEFAULT => 'crap.tmpl'} );
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$config->define("deleteDataTemplate", { DEFAULT => 'crap.tmpl'} );
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1955
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jones
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$config->define("debug", { DEFAULT => '0'} );
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brooke
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$config->define("lat", { ARGCOUNT => ARGCOUNT_HASH} );
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$config->define("lon", { ARGCOUNT => ARGCOUNT_HASH} );
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if (! hasContent($FORM::cfg)) {
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$error = "Application misconfigured. Please contact the administrator.";
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push(@errorMessages, $error);
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} else {
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my $cfgfile = $cfgdir . "/" . $FORM::cfg . "/" . $FORM::cfg . ".cfg";
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$config->file($cfgfile);
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}
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my $metacatUrl = $config->metacatUrl();
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my $username = $config->username();
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my $password = $config->password();
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my $ldapUrl = $config->ldapUrl();
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my $defaultScope = $config->defaultScope();
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my $organization = $config->organization();
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my $orgabbrev = $config->orgabbrev();
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my $orgurl = $config->orgurl();
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my $orgfilter = $organization;
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$orgfilter =~ s/ /%20/g;
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my $responseTemplate = $config->responseTemplate();
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my $entryFormTemplate = $config->entryFormTemplate();
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my $deleteDataTemplate = $config->deleteDataTemplate();
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my $guideTemplate = $config->guideTemplate();
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my $confirmDataTemplate = $config->confirmDataTemplate();
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my $accesspubid = $config->accesspubid();
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my $accesssysid = $config->accesssysid();
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my $datasetpubid = $config->datasetpubid();
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my $datasetsysid = $config->datasetsysid();
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my $mailhost = $config->mailhost();
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my $sender = $config->sender();
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my $recipient = $config->recipient();
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my $adminname = $config->adminname();
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1973
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jones
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my $nceas_db;
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my $nceas_db_user;
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my $nceas_db_password;
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if ($FORM::cfg eq 'nceas') {
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$nceas_db = $config->nceas_db();
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$nceas_db_user = $config->nceas_db_user();
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$nceas_db_password = $config->nceas_db_password();
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}
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1955
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jones
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my $debug = $config->debug();
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1929
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brooke
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my $lat = $config->get('lat');
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my $lon = $config->get('lon');
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# Convert the lat and lon configs into usable data structures
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my @sitelist;
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my %siteLatDMS;
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my %siteLongDMS;
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foreach my $newsite (keys %$lat) {
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my ($latd, $latm, $lats, $latdir) = split(':', $lat->{$newsite});
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my ($lond, $lonm, $lons, $londir) = split(':', $lon->{$newsite});
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push(@sitelist, $newsite);
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$siteLatDMS{$newsite} = [ $latd, $latm, $lats, $latdir ];
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$siteLongDMS{$newsite} = [ $lond, $lonm, $lons, $londir ];
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}
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# set some configuration options for the template object
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my $ttConfig = {
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INCLUDE_PATH => $templatesdir,
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INTERPOLATE => 0,
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POST_CHOMP => 1,
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};
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# create an instance of the template processor
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my $template = Template->new($ttConfig) || die $Template::ERROR, "\n";
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print "Content-type: text/html\n\n";
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# Set up the template information that is common to all forms
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$$templateVars{'cfg'} = $FORM::cfg;
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$$templateVars{'recipient'} = $recipient;
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$$templateVars{'adminname'} = $adminname;
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$$templateVars{'organization'} = $organization;
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$$templateVars{'orgabbrev'} = $orgabbrev;
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$$templateVars{'orgurl'} = $orgurl;
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$$templateVars{'orgfilter'} = $orgfilter;
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1983
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jones
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debug("Registry: Initialized");
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1929
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brooke
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# Process the form based on stage parameter.
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if ($FORM::stage =~ "guide") {
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# Send back the information on how to fill the form
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$$templateVars{'section'} = "Guide on How to Complete Registry Entries";
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$template->process( $guideTemplate, $templateVars);
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exit(0);
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} elsif ($FORM::stage =~ "insert") {
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# The user has entered the data. Do data validation and send back data
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# to confirm the data that has been entered.
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toConfirmData();
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exit(0);
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}elsif ($FORM::dataWrong =~ "No, I want to change it!!" && $FORM::stage =~ "confirmed") {
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# The user wants to correct the data that he has entered.
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# Hence show the data again in entryData form.
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confirmDataToReEntryData();
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exit(0);
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}elsif ($FORM::stage =~ "modify") {
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# Modification of a file has been requested.
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# Show the form will all the values filled in.
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my @sortedSites;
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foreach my $site (sort @sitelist) {
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push(@sortedSites, $site);
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}
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$$templateVars{'siteList'} = \@sortedSites;
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$$templateVars{'section'} = "Modification Form";
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$$templateVars{'docid'} = $FORM::docid;
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modifyData();
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exit(0);
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}elsif ($FORM::stage =~ "delete_confirm") {
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# Result from deleteData form.
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if($FORM::deleteData =~ "Delete data"){
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1977
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jones
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# delete Data
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deleteData(1);
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exit(0);
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1929
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brooke
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} else {
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1977
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jones
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# go back to search page.
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exit(0);
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1929
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brooke
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}
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}elsif ($FORM::stage =~ "delete") {
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# Deletion of a file has been requested.
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# Ask for username and password using deleteDataForm
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$$templateVars{'docid'} = $FORM::docid;
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$template->process( $deleteDataTemplate, $templateVars);
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exit(0);
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}elsif ($FORM::stage !~ "confirmed") {
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# None of the stages have been reached and data is not being confirmed.
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# Hence, send back entry form for entry of data.
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| 225 |
1983
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jones
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debug("Registry: Sending form");
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| 226 |
1929
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brooke
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my @sortedSites;
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foreach my $site (sort @sitelist) {
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push(@sortedSites, $site);
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}
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| 230 |
1973
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jones
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if ($FORM::cfg eq 'nceas') {
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my $projects = getProjectList();
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| 233 |
1974
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jones
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$$templateVars{'projects'} = $projects;
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$$templateVars{'wg'} = \@FORM::wg;
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| 235 |
1973
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jones
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}
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| 236 |
1974
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jones
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|
| 237 |
1929
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brooke
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$$templateVars{'siteList'} = \@sortedSites;
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$$templateVars{'section'} = "Entry Form";
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$$templateVars{'docid'} = "";
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| 240 |
1983
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jones
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debug("Registry: Sending form: ready to process template");
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| 241 |
1929
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brooke
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$template->process( $entryFormTemplate, $templateVars);
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| 242 |
1983
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jones
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debug("Registry: Sending form: template processed");
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| 243 |
1929
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brooke
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exit(0);
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| 244 |
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}
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| 245 |
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| 246 |
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# Confirm stage has been reached. Enter the data into metacat.
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| 247 |
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| 248 |
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# Initialize some global vars
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| 249 |
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my $latDeg1 = "";
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| 250 |
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my $latMin1 = "";
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| 251 |
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my $latSec1 = "";
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| 252 |
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my $hemisphLat1 = "";
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| 253 |
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my $longDeg1 = "";
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| 254 |
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my $longMin1 = "";
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| 255 |
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my $longSec1 = "";
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| 256 |
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my $hemisphLong1 = "";
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| 257 |
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my $latDeg2 = "";
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| 258 |
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my $latMin2 = "";
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| 259 |
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my $latSec2 = "";
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| 260 |
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my $hemisphLat2 = "";
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| 261 |
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my $longDeg2 = "";
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| 262 |
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my $longMin2 = "";
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| 263 |
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my $longSec2 = "";
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| 264 |
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my $hemisphLong2 = "";
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| 265 |
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| 266 |
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# validate the input form parameters
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| 267 |
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my $invalidParams;
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| 268 |
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| 269 |
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if (! $error) {
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| 270 |
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$invalidParams = validateParameters(1);
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| 271 |
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if (scalar(@$invalidParams)) {
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| 272 |
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$$templateVars{'status'} = 'failure';
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| 273 |
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$$templateVars{'invalidParams'} = $invalidParams;
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| 274 |
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$error = 1;
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| 275 |
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}
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| 276 |
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}
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| 277 |
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| 278 |
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| 279 |
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my $metacat;
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| 280 |
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my $docid;
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| 281 |
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if (! $error) {
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| 282 |
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# Parameters have been validated and Create the XML document
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| 283 |
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| 284 |
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my $xmldoc = createXMLDocument();
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| 285 |
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| 286 |
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# Write out the XML file for debugging purposes
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| 287 |
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#my $testFile = $tmpdir . "/test.xml";
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| 288 |
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| 289 |
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# Create a metacat object
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| 290 |
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$metacat = Metacat->new();
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| 291 |
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if ($metacat) {
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| 292 |
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$metacat->set_options( metacatUrl => $metacatUrl );
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| 293 |
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} else {
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| 294 |
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#die "failed during metacat creation\n";
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| 295 |
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push(@errorMessages, "Failed during metacat creation.");
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| 296 |
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}
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| 297 |
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| 298 |
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# Login to metacat
|
| 299 |
|
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my $userDN = $FORM::username;
|
| 300 |
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my $userOrg = $FORM::organization;
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| 301 |
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my $userPass = $FORM::password;
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| 302 |
|
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my $dname = "uid=$userDN,o=$userOrg,dc=ecoinformatics,dc=org";
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| 303 |
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| 304 |
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my $errorMessage = "";
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| 305 |
|
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my $response = $metacat->login($dname, $userPass);
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| 306 |
|
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if (! $response) {
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| 307 |
|
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push(@errorMessages, $metacat->getMessage());
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| 308 |
|
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push(@errorMessages, "Failed during login.\n");
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| 309 |
|
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}
|
| 310 |
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|
| 311 |
1982
|
jones
|
debug( "Registry: A");
|
| 312 |
1955
|
jones
|
if ($FORM::docid eq "") {
|
| 313 |
|
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debug( "Registry: B1");
|
| 314 |
1977
|
jones
|
# document is being inserted
|
| 315 |
|
|
my $notunique = "NOT_UNIQUE";
|
| 316 |
|
|
while ($notunique eq "NOT_UNIQUE") {
|
| 317 |
|
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$docid = newAccessionNumber($defaultScope);
|
| 318 |
|
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|
| 319 |
|
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$xmldoc =~ s/docid/$docid/;
|
| 320 |
1929
|
brooke
|
|
| 321 |
1992
|
jones
|
#my $testFile = "/tmp/test.xml";
|
| 322 |
|
|
#open (TFILE,">$testFile") || die ("Cant open xml file...\n");
|
| 323 |
|
|
#print TFILE $xmldoc;
|
| 324 |
|
|
#close(TFILE);
|
| 325 |
1929
|
brooke
|
|
| 326 |
1977
|
jones
|
$notunique = insertMetadata($xmldoc, $docid);
|
| 327 |
|
|
# if (!$notunique) {
|
| 328 |
|
|
# Write out the XML file for debugging purposes
|
| 329 |
|
|
#my $testFile = $tmpdir . "/test-new.xml";
|
| 330 |
|
|
#open (TFILE,">$testFile") || die ("Cant open xml file...\n");
|
| 331 |
|
|
#print TFILE $newdoc;
|
| 332 |
|
|
#close(TFILE);
|
| 333 |
|
|
# }
|
| 334 |
1955
|
jones
|
|
| 335 |
|
|
# The id wasn't unique, so update our lastid file
|
| 336 |
1977
|
jones
|
if ($notunique eq "NOT_UNIQUE") {
|
| 337 |
1989
|
jones
|
debug( "Registry: Updating lastid (B1.1)");
|
| 338 |
1955
|
jones
|
updateLastId($defaultScope);
|
| 339 |
|
|
}
|
| 340 |
1977
|
jones
|
}
|
| 341 |
1955
|
jones
|
debug("Registry: B2");
|
| 342 |
1977
|
jones
|
if ($notunique ne "SUCCESS") {
|
| 343 |
1955
|
jones
|
debug("Registry: NO SUCCESS");
|
| 344 |
|
|
debug("Message is: $notunique");
|
| 345 |
1929
|
brooke
|
push(@errorMessages, $notunique);
|
| 346 |
1977
|
jones
|
}
|
| 347 |
1955
|
jones
|
debug("Registry: B3");
|
| 348 |
1929
|
brooke
|
} else {
|
| 349 |
1977
|
jones
|
# document is being modified
|
| 350 |
|
|
$docid = $FORM::docid;
|
| 351 |
|
|
|
| 352 |
|
|
my $x;
|
| 353 |
|
|
my $y;
|
| 354 |
|
|
my $z;
|
| 355 |
1929
|
brooke
|
|
| 356 |
1977
|
jones
|
($x, $y, $z) = split(/\./, $docid);
|
| 357 |
|
|
$z++;
|
| 358 |
|
|
$docid = "$x.$y.$z";
|
| 359 |
|
|
|
| 360 |
|
|
$xmldoc =~ s/docid/$docid/;
|
| 361 |
1929
|
brooke
|
|
| 362 |
1977
|
jones
|
my $response = $metacat->update($docid, $xmldoc);
|
| 363 |
1929
|
brooke
|
|
| 364 |
1977
|
jones
|
if (! $response) {
|
| 365 |
|
|
push(@errorMessages, $metacat->getMessage());
|
| 366 |
|
|
push(@errorMessages, "Failed while updating.\n");
|
| 367 |
|
|
}
|
| 368 |
1929
|
brooke
|
|
| 369 |
1977
|
jones
|
if (scalar(@errorMessages)) {
|
| 370 |
1955
|
jones
|
debug("Registry: ErrorMessages defined in modify.");
|
| 371 |
1977
|
jones
|
$$templateVars{'status'} = 'failure';
|
| 372 |
|
|
$$templateVars{'errorMessages'} = \@errorMessages;
|
| 373 |
|
|
$error = 1;
|
| 374 |
|
|
}
|
| 375 |
1929
|
brooke
|
|
| 376 |
1955
|
jones
|
#if (! $error) {
|
| 377 |
|
|
#sendNotification($docid, $mailhost, $sender, $recipient);
|
| 378 |
|
|
#}
|
| 379 |
1977
|
jones
|
|
| 380 |
1929
|
brooke
|
# Create our HTML response and send it back
|
| 381 |
1977
|
jones
|
$$templateVars{'function'} = "modified";
|
| 382 |
|
|
$$templateVars{'section'} = "Modification Status";
|
| 383 |
|
|
$template->process( $responseTemplate, $templateVars);
|
| 384 |
1929
|
brooke
|
|
| 385 |
1977
|
jones
|
exit(0);
|
| 386 |
1929
|
brooke
|
}
|
| 387 |
|
|
}
|
| 388 |
|
|
|
| 389 |
1955
|
jones
|
debug("Registry: C");
|
| 390 |
1929
|
brooke
|
|
| 391 |
|
|
if (scalar(@errorMessages)) {
|
| 392 |
1955
|
jones
|
debug("Registry: ErrorMessages defined.");
|
| 393 |
1929
|
brooke
|
$$templateVars{'status'} = 'failure';
|
| 394 |
|
|
$$templateVars{'errorMessages'} = \@errorMessages;
|
| 395 |
|
|
$error = 1;
|
| 396 |
|
|
}
|
| 397 |
|
|
|
| 398 |
1936
|
jones
|
#if (! $error) {
|
| 399 |
|
|
#sendNotification($docid, $mailhost, $sender, $recipient);
|
| 400 |
|
|
#}
|
| 401 |
1929
|
brooke
|
|
| 402 |
|
|
# Create our HTML response and send it back
|
| 403 |
|
|
$$templateVars{'function'} = "submitted";
|
| 404 |
|
|
$$templateVars{'section'} = "Submission Status";
|
| 405 |
|
|
$template->process( $responseTemplate, $templateVars);
|
| 406 |
|
|
|
| 407 |
|
|
exit(0);
|
| 408 |
|
|
|
| 409 |
|
|
|
| 410 |
|
|
################################################################################
|
| 411 |
|
|
#
|
| 412 |
1955
|
jones
|
# Subroutine for updating a metacat id for a given scope to the highest value
|
| 413 |
|
|
#
|
| 414 |
|
|
################################################################################
|
| 415 |
|
|
sub updateLastId {
|
| 416 |
|
|
my $scope = shift;
|
| 417 |
|
|
|
| 418 |
|
|
my $errormsg = 0;
|
| 419 |
|
|
my $docid = $metacat->getLastId($scope);
|
| 420 |
|
|
|
| 421 |
|
|
if ($docid =~ /null/) {
|
| 422 |
|
|
# No docids with this scope present, so do nothing
|
| 423 |
|
|
} elsif ($docid) {
|
| 424 |
|
|
# Update the lastid file for this scope
|
| 425 |
|
|
(my $foundScope, my $id, my $rev) = split(/\./, $docid);
|
| 426 |
|
|
debug("Docid is: $docid\n");
|
| 427 |
|
|
debug("Lastid is: $id");
|
| 428 |
|
|
my $scopeFile = $cfgdir . "/" . $FORM::cfg . "/" . $scope . ".lastid";
|
| 429 |
|
|
open(LASTID, ">$scopeFile") or
|
| 430 |
|
|
die "Failed to open lastid file for writing!";
|
| 431 |
|
|
print LASTID $id, "\n";
|
| 432 |
|
|
close(LASTID);
|
| 433 |
|
|
} else {
|
| 434 |
|
|
$errormsg = $metacat->getMessage();
|
| 435 |
|
|
debug("Error in getLastId: $errormsg");
|
| 436 |
|
|
}
|
| 437 |
|
|
}
|
| 438 |
|
|
|
| 439 |
|
|
################################################################################
|
| 440 |
|
|
#
|
| 441 |
1929
|
brooke
|
# Subroutine for inserting a document to metacat
|
| 442 |
|
|
#
|
| 443 |
|
|
################################################################################
|
| 444 |
|
|
sub insertMetadata {
|
| 445 |
|
|
my $xmldoc = shift;
|
| 446 |
|
|
my $docid = shift;
|
| 447 |
|
|
|
| 448 |
|
|
my $notunique = "SUCCESS";
|
| 449 |
1989
|
jones
|
debug("Registry: Starting insert (D1)");
|
| 450 |
1929
|
brooke
|
my $response = $metacat->insert($docid, $xmldoc);
|
| 451 |
|
|
if (! $response) {
|
| 452 |
1989
|
jones
|
debug("Registry: Response gotten (D2)");
|
| 453 |
1929
|
brooke
|
my $errormsg = $metacat->getMessage();
|
| 454 |
1989
|
jones
|
debug("Registry: Error is (D3): ".$errormsg);
|
| 455 |
1929
|
brooke
|
if ($errormsg =~ /is already in use/) {
|
| 456 |
|
|
$notunique = "NOT_UNIQUE";
|
| 457 |
|
|
#print "Accession number already used: $docid\n";
|
| 458 |
|
|
} elsif ($errormsg =~ /<login>/) {
|
| 459 |
|
|
$notunique = "SUCCESS";
|
| 460 |
|
|
} else {
|
| 461 |
|
|
#print "<p>Dumping error on failure...</p>\n";
|
| 462 |
|
|
#print "<p>", $errormsg, "</p>\n";
|
| 463 |
|
|
#die "Failed during insert\n";
|
| 464 |
|
|
#print "<p>Failed during insert</p>\n";
|
| 465 |
|
|
$notunique = $errormsg;
|
| 466 |
|
|
}
|
| 467 |
|
|
}
|
| 468 |
1989
|
jones
|
debug("Registry: Ending insert (D4)");
|
| 469 |
1929
|
brooke
|
|
| 470 |
|
|
return $notunique;
|
| 471 |
|
|
}
|
| 472 |
|
|
|
| 473 |
|
|
################################################################################
|
| 474 |
|
|
#
|
| 475 |
|
|
# Subroutine for generating a new accession number
|
| 476 |
|
|
# Note: this is not threadsafe, assumes only one running process at a time
|
| 477 |
|
|
# Also: need to check metacat for max id # used in this scope already
|
| 478 |
|
|
################################################################################
|
| 479 |
|
|
sub newAccessionNumber {
|
| 480 |
|
|
my $scope = shift;
|
| 481 |
|
|
|
| 482 |
|
|
my $docrev = 1;
|
| 483 |
|
|
my $lastid = 1;
|
| 484 |
|
|
|
| 485 |
|
|
my $scopeFile = $cfgdir . "/" . $FORM::cfg . "/" . $scope . ".lastid";
|
| 486 |
|
|
if (-e $scopeFile) {
|
| 487 |
|
|
open(LASTID, "<$scopeFile") or die "Failed to generate accession number!";
|
| 488 |
|
|
$lastid = <LASTID>;
|
| 489 |
|
|
chomp($lastid);
|
| 490 |
|
|
$lastid++;
|
| 491 |
|
|
close(LASTID);
|
| 492 |
|
|
}
|
| 493 |
|
|
open(LASTID, ">$scopeFile") or die "Failed to open lastid file for writing!";
|
| 494 |
|
|
print LASTID $lastid, "\n";
|
| 495 |
|
|
close(LASTID);
|
| 496 |
|
|
|
| 497 |
|
|
my $docroot = "$scope.$lastid.";
|
| 498 |
|
|
my $docid = $docroot . $docrev;
|
| 499 |
|
|
return $docid;
|
| 500 |
|
|
}
|
| 501 |
|
|
|
| 502 |
|
|
################################################################################
|
| 503 |
|
|
#
|
| 504 |
|
|
# Subroutine for generating a new ACL document
|
| 505 |
|
|
#
|
| 506 |
|
|
################################################################################
|
| 507 |
|
|
sub newAccessDocument {
|
| 508 |
|
|
my $aclid = shift;
|
| 509 |
|
|
my $acl = "<?xml version=\"1.0\"?>\n";
|
| 510 |
|
|
$acl .= "<!DOCTYPE acl ";
|
| 511 |
|
|
$acl .= "PUBLIC \"$accesspubid\" \"$accesssysid\">\n";
|
| 512 |
|
|
$acl .= "<acl authSystem=\"ldap://ldap.ecoinformatics.org\" ";
|
| 513 |
|
|
$acl .= "order=\"denyFirst\">\n";
|
| 514 |
|
|
$acl .= "<identifier system=\"knb\">$aclid</identifier>\n";
|
| 515 |
|
|
#$acl .= "<identifier>$aclid</identifier>\n";
|
| 516 |
|
|
$acl .= "<allow><principal>$username</principal>" .
|
| 517 |
|
|
"<permission>all</permission></allow>\n";
|
| 518 |
|
|
#$acl .= "<allow><principal>public</principal>" .
|
| 519 |
|
|
# "<permission>read</permission></allow>\n";
|
| 520 |
|
|
$acl .= "</acl>\n";
|
| 521 |
|
|
|
| 522 |
|
|
return $acl;
|
| 523 |
|
|
}
|
| 524 |
|
|
|
| 525 |
|
|
################################################################################
|
| 526 |
|
|
#
|
| 527 |
|
|
# Subroutine for inserting identifers to the metadata document passed to us
|
| 528 |
|
|
#
|
| 529 |
|
|
################################################################################
|
| 530 |
|
|
sub insertIdentifiers {
|
| 531 |
|
|
my $docstring = shift;
|
| 532 |
|
|
my $aclid = shift;
|
| 533 |
|
|
my $docid = shift;
|
| 534 |
|
|
|
| 535 |
|
|
my $parser = XML::LibXML->new();
|
| 536 |
|
|
my $dom = $parser->parse_string($docstring);
|
| 537 |
|
|
|
| 538 |
|
|
my $root = $dom->documentElement;
|
| 539 |
|
|
my $name = $root->getName();
|
| 540 |
|
|
|
| 541 |
|
|
my $addedIdentifier = 0;
|
| 542 |
|
|
my $currentElement = $root->getFirstChild();
|
| 543 |
|
|
$name = $currentElement->getName();
|
| 544 |
|
|
while ("$name" !~ "triple" &&
|
| 545 |
|
|
"$name" !~ "temporalCov" &&
|
| 546 |
|
|
"$name" !~ "geographicCov" &&
|
| 547 |
|
|
"$name" !~ "taxonomicCov"
|
| 548 |
|
|
) {
|
| 549 |
|
|
if ("$name" =~ "identifier" ||
|
| 550 |
|
|
"$name" =~ "title") {
|
| 551 |
|
|
if (! $addedIdentifier) {
|
| 552 |
|
|
my $idelement = $dom->createElement( "identifier" );
|
| 553 |
|
|
$addedIdentifier = 1;
|
| 554 |
|
|
$idelement->setAttribute("system", "knb");
|
| 555 |
|
|
$idelement->appendTextNode($docid);
|
| 556 |
|
|
$root->insertBefore($idelement, $currentElement);
|
| 557 |
|
|
}
|
| 558 |
|
|
}
|
| 559 |
|
|
$currentElement = $currentElement->getNextSibling();
|
| 560 |
|
|
$name = $currentElement->getName();
|
| 561 |
|
|
}
|
| 562 |
|
|
# Link the document to the access doc
|
| 563 |
|
|
my $element = $dom->createElement( "triple" );
|
| 564 |
|
|
$element->appendTextChild( "subject", $aclid);
|
| 565 |
|
|
$element->appendTextChild( "relationship",
|
| 566 |
|
|
"describes access control rules for");
|
| 567 |
|
|
$element->appendTextChild( "object", $docid);
|
| 568 |
|
|
$root->insertBefore($element, $currentElement);
|
| 569 |
|
|
# Link the access doc to the access doc
|
| 570 |
|
|
$element = $dom->createElement( "triple" );
|
| 571 |
|
|
$element->appendTextChild( "subject", $aclid);
|
| 572 |
|
|
$element->appendTextChild( "relationship",
|
| 573 |
|
|
"describes access control rules for");
|
| 574 |
|
|
$element->appendTextChild( "object", $aclid);
|
| 575 |
|
|
$root->insertBefore($element, $currentElement);
|
| 576 |
|
|
|
| 577 |
|
|
return $dom->toString();
|
| 578 |
|
|
}
|
| 579 |
|
|
|
| 580 |
|
|
################################################################################
|
| 581 |
|
|
#
|
| 582 |
|
|
# Validate the parameters to make sure that required params are provided
|
| 583 |
|
|
#
|
| 584 |
|
|
################################################################################
|
| 585 |
|
|
sub validateParameters {
|
| 586 |
|
|
my $chkUser = shift;
|
| 587 |
|
|
my @invalidParams;
|
| 588 |
|
|
|
| 589 |
|
|
push(@invalidParams, "Provider's first name is missing.")
|
| 590 |
|
|
unless hasContent($FORM::providerGivenName);
|
| 591 |
|
|
push(@invalidParams, "Provider's last name is missing.")
|
| 592 |
|
|
unless hasContent($FORM::providerSurName);
|
| 593 |
|
|
push(@invalidParams, "Name of site is missing.")
|
| 594 |
1974
|
jones
|
unless (hasContent($FORM::site) || $FORM::site =~ /elect/ ||
|
| 595 |
|
|
$FORM::cfg eq "nceas");
|
| 596 |
1929
|
brooke
|
push(@invalidParams, "Data set title is missing.")
|
| 597 |
|
|
unless hasContent($FORM::title);
|
| 598 |
|
|
push(@invalidParams, "Originator's first name is missing.")
|
| 599 |
|
|
unless hasContent($FORM::origNamefirst0);
|
| 600 |
|
|
push(@invalidParams, "Originator's last name is missing.")
|
| 601 |
|
|
unless hasContent($FORM::origNamelast0);
|
| 602 |
|
|
push(@invalidParams, "Abstract is missing.")
|
| 603 |
|
|
unless hasContent($FORM::abstract);
|
| 604 |
|
|
push(@invalidParams, "Beginning year of data set is missing.")
|
| 605 |
|
|
unless hasContent($FORM::beginningYear);
|
| 606 |
1983
|
jones
|
push(@invalidParams, "Geographic description is missing.")
|
| 607 |
|
|
unless (hasContent($FORM::geogdesc));
|
| 608 |
1929
|
brooke
|
|
| 609 |
|
|
# If the "use site" coord. box is checked and if the site is in
|
| 610 |
|
|
# the longitude hash ... && ($siteLatDMS{$FORM::site})
|
| 611 |
|
|
|
| 612 |
|
|
if (($FORM::useSiteCoord) && ($siteLatDMS{$FORM::site}) ) {
|
| 613 |
|
|
|
| 614 |
|
|
$latDeg1 = $siteLatDMS{$FORM::site}[0];
|
| 615 |
|
|
$latMin1 = $siteLatDMS{$FORM::site}[1];
|
| 616 |
|
|
$latSec1 = $siteLatDMS{$FORM::site}[2];
|
| 617 |
|
|
$hemisphLat1 = $siteLatDMS{$FORM::site}[3];
|
| 618 |
|
|
$longDeg1 = $siteLongDMS{$FORM::site}[0];
|
| 619 |
|
|
$longMin1 = $siteLongDMS{$FORM::site}[1];
|
| 620 |
|
|
$longSec1 = $siteLongDMS{$FORM::site}[2];
|
| 621 |
|
|
$hemisphLong1 = $siteLongDMS{$FORM::site}[3];
|
| 622 |
|
|
|
| 623 |
|
|
} else {
|
| 624 |
|
|
|
| 625 |
|
|
$latDeg1 = $FORM::latDeg1;
|
| 626 |
|
|
$latMin1 = $FORM::latMin1;
|
| 627 |
|
|
$latSec1 = $FORM::latSec1;
|
| 628 |
|
|
$hemisphLat1 = $FORM::hemisphLat1;
|
| 629 |
|
|
$longDeg1 = $FORM::longDeg1;
|
| 630 |
|
|
$longMin1 = $FORM::longMin1;
|
| 631 |
|
|
$longSec1 = $FORM::longSec1;
|
| 632 |
|
|
$hemisphLong1 = $FORM::hemisphLong1;
|
| 633 |
|
|
}
|
| 634 |
|
|
|
| 635 |
|
|
# Check if latDeg1 and longDeg1 has values if useSiteCoord is used.
|
| 636 |
|
|
# This check is required because some of the sites dont have lat
|
| 637 |
|
|
# and long mentioned in the config file.
|
| 638 |
|
|
|
| 639 |
|
|
if ($FORM::useSiteCoord) {
|
| 640 |
1997
|
jones
|
push(@invalidParams, "The Data Registry doesn't have latitude and longitude information for the site that you chose. Please go back and enter the spatial information.")
|
| 641 |
1977
|
jones
|
unless(hasContent($latDeg1) && hasContent($longDeg1));
|
| 642 |
1929
|
brooke
|
}else{
|
| 643 |
1977
|
jones
|
push(@invalidParams, "Latitude degrees are missing.")
|
| 644 |
|
|
unless hasContent($latDeg1);
|
| 645 |
|
|
push(@invalidParams, "Longitude degrees are missing.")
|
| 646 |
|
|
unless hasContent($longDeg1);
|
| 647 |
1929
|
brooke
|
}
|
| 648 |
|
|
|
| 649 |
1989
|
jones
|
push(@invalidParams,
|
| 650 |
|
|
"You must provide a method description if you provide a method title.")
|
| 651 |
|
|
if (hasContent($FORM::methodTitle) && !(scalar(@FORM::methodPara) > 0));
|
| 652 |
|
|
push(@invalidParams,
|
| 653 |
|
|
"You must provide a method description if you provide a study extent description.")
|
| 654 |
|
|
if (hasContent($FORM::studyExtentDescription) && !(scalar(@FORM::methodPara) > 0));
|
| 655 |
|
|
push(@invalidParams,
|
| 656 |
|
|
"You must provide both a study extent description and a sampling description, or neither.")
|
| 657 |
1997
|
jones
|
if (
|
| 658 |
|
|
(hasContent($FORM::studyExtentDescription) && !hasContent($FORM::samplingDescription)) ||
|
| 659 |
|
|
(!hasContent($FORM::studyExtentDescription) && hasContent($FORM::samplingDescription))
|
| 660 |
|
|
);
|
| 661 |
1989
|
jones
|
|
| 662 |
1929
|
brooke
|
push(@invalidParams, "Contact first name is missing.")
|
| 663 |
1977
|
jones
|
unless (hasContent($FORM::origNamefirstContact) ||
|
| 664 |
|
|
$FORM::useOrigAddress);
|
| 665 |
1929
|
brooke
|
push(@invalidParams, "Contact last name is missing.")
|
| 666 |
1977
|
jones
|
unless (hasContent($FORM::origNamelastContact) ||
|
| 667 |
|
|
$FORM::useOrigAddress);
|
| 668 |
1929
|
brooke
|
push(@invalidParams, "Data medium is missing.")
|
| 669 |
1977
|
jones
|
unless (hasContent($FORM::dataMedium) || $FORM::dataMedium =~ /elect/);
|
| 670 |
1929
|
brooke
|
|
| 671 |
|
|
if($chkUser){
|
| 672 |
1977
|
jones
|
my $errorUserPass = validateUserPass();
|
| 673 |
|
|
if($errorUserPass ne ""){
|
| 674 |
|
|
push(@invalidParams, $errorUserPass);
|
| 675 |
1929
|
brooke
|
}
|
| 676 |
1977
|
jones
|
}
|
| 677 |
1929
|
brooke
|
|
| 678 |
|
|
return \@invalidParams;
|
| 679 |
|
|
}
|
| 680 |
|
|
|
| 681 |
|
|
################################################################################
|
| 682 |
|
|
#
|
| 683 |
|
|
# Validate the parameters username and password.
|
| 684 |
|
|
#
|
| 685 |
|
|
################################################################################
|
| 686 |
|
|
sub validateUserPass {
|
| 687 |
|
|
my $userDN = $FORM::username;
|
| 688 |
|
|
my $userOrg = $FORM::organization;
|
| 689 |
|
|
my $userPass = $FORM::password;
|
| 690 |
|
|
my $dname = "uid=$userDN,o=$userOrg,dc=ecoinformatics,dc=org";
|
| 691 |
|
|
|
| 692 |
|
|
my $errorMessage = "";
|
| 693 |
|
|
my $ldap = Net::LDAP->new($ldapUrl) or die "$@";
|
| 694 |
|
|
my $bindresult = $ldap->bind( version => 3, dn => $dname,
|
| 695 |
|
|
password => $userPass );
|
| 696 |
|
|
if ($bindresult->code) {
|
| 697 |
|
|
$errorMessage = "Failed to log into metacat. Please check the username, organization and password entered";
|
| 698 |
|
|
return $errorMessage;
|
| 699 |
|
|
}
|
| 700 |
|
|
return $errorMessage;
|
| 701 |
|
|
}
|
| 702 |
|
|
|
| 703 |
|
|
|
| 704 |
|
|
################################################################################
|
| 705 |
|
|
#
|
| 706 |
|
|
# utility function to determine if a paramter is defined and not an empty string
|
| 707 |
|
|
#
|
| 708 |
|
|
################################################################################
|
| 709 |
|
|
sub hasContent {
|
| 710 |
|
|
my $param = shift;
|
| 711 |
|
|
|
| 712 |
|
|
my $paramHasContent;
|
| 713 |
|
|
if (!defined($param) || $param eq '') {
|
| 714 |
|
|
$paramHasContent = 0;
|
| 715 |
|
|
} else {
|
| 716 |
|
|
$paramHasContent = 1;
|
| 717 |
|
|
}
|
| 718 |
|
|
return $paramHasContent;
|
| 719 |
|
|
}
|
| 720 |
|
|
|
| 721 |
|
|
|
| 722 |
|
|
################################################################################
|
| 723 |
|
|
#
|
| 724 |
|
|
# Create the XML document from the HTML form input
|
| 725 |
|
|
# returns the XML document as a string
|
| 726 |
|
|
#
|
| 727 |
|
|
################################################################################
|
| 728 |
|
|
sub createXMLDocument {
|
| 729 |
|
|
|
| 730 |
|
|
my $orig = "";
|
| 731 |
|
|
my $role = "associatedParty";
|
| 732 |
|
|
my $creat = "";
|
| 733 |
|
|
my $metaP = "";
|
| 734 |
|
|
my $apart = "";
|
| 735 |
|
|
my $cont = "";
|
| 736 |
|
|
my $publ = "";
|
| 737 |
|
|
my $dso = "";
|
| 738 |
|
|
my $gmt = gmtime($now);
|
| 739 |
|
|
my $doc = "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?>\n";
|
| 740 |
|
|
|
| 741 |
|
|
$doc .= "<eml:eml\n
|
| 742 |
|
|
\t packageId=\"docid\" system=\"knb\"\n
|
| 743 |
|
|
\t xmlns:eml=\"eml://ecoinformatics.org/eml-2.0.0\"\n
|
| 744 |
|
|
\t xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n
|
| 745 |
|
|
\t xmlns:ds=\"eml://ecoinformatics.org/dataset-2.0.0\"\n
|
| 746 |
|
|
\t xmlns:stmml=\"http://www.xml-cml.org/schema/stmml\"\n
|
| 747 |
|
|
\t xsi:schemaLocation=\"eml://ecoinformatics.org/eml-2.0.0 eml.xsd\">\n";
|
| 748 |
|
|
|
| 749 |
|
|
$doc .= "<!-- Person who filled in the catalog entry form: ";
|
| 750 |
|
|
$doc .= "$FORM::providerGivenName $FORM::providerSurName -->\n";
|
| 751 |
|
|
$doc .= "<!-- Form filled out at $gmt GMT -->\n";
|
| 752 |
|
|
$doc .= "<dataset>\n";
|
| 753 |
|
|
|
| 754 |
|
|
if (hasContent($FORM::identifier)) {
|
| 755 |
|
|
$doc .= "<alternateIdentifier system=\"$FORM::site\">";
|
| 756 |
|
|
$doc .= $FORM::identifier . "</alternateIdentifier>\n";
|
| 757 |
|
|
}
|
| 758 |
|
|
|
| 759 |
|
|
if (hasContent($FORM::title)) {
|
| 760 |
|
|
$doc .= "<title>$FORM::title</title>\n";
|
| 761 |
|
|
}
|
| 762 |
|
|
|
| 763 |
|
|
if (hasContent($FORM::origNamelast0)) {
|
| 764 |
1977
|
jones
|
$role = "creator";
|
| 765 |
1929
|
brooke
|
$orig .= "<individualName>\n";
|
| 766 |
|
|
$orig .= "<givenName>$FORM::origNamefirst0</givenName>\n";
|
| 767 |
|
|
$orig .= "<surName>$FORM::origNamelast0</surName>\n";
|
| 768 |
|
|
$orig .= "</individualName>\n";
|
| 769 |
|
|
}
|
| 770 |
|
|
|
| 771 |
|
|
if (hasContent($FORM::origNameOrg)) {
|
| 772 |
|
|
$orig .= "<organizationName>$FORM::origNameOrg</organizationName>\n";
|
| 773 |
|
|
}
|
| 774 |
|
|
|
| 775 |
|
|
if (hasContent($FORM::origDelivery) || hasContent($FORM::origCity) ||
|
| 776 |
|
|
(hasContent($FORM::origState ) &&
|
| 777 |
|
|
($FORM::origState !~ "Select state here.")) ||
|
| 778 |
|
|
hasContent($FORM::origStateOther) ||
|
| 779 |
|
|
hasContent($FORM::origZIP ) || hasContent($FORM::origCountry)) {
|
| 780 |
|
|
$orig .= "<address>\n";
|
| 781 |
|
|
|
| 782 |
|
|
if (hasContent($FORM::origDelivery)) {
|
| 783 |
|
|
$orig .= "<deliveryPoint>$FORM::origDelivery</deliveryPoint>\n";
|
| 784 |
|
|
}
|
| 785 |
|
|
if (hasContent($FORM::origCity)) {
|
| 786 |
|
|
$orig .= "<city>$FORM::origCity</city>\n";
|
| 787 |
|
|
}
|
| 788 |
|
|
|
| 789 |
1977
|
jones
|
if (hasContent($FORM::origState) &&
|
| 790 |
1929
|
brooke
|
($FORM::origState !~ "Select state here.")) {
|
| 791 |
|
|
$orig .= "<administrativeArea>$FORM::origState";
|
| 792 |
|
|
$orig .= "</administrativeArea>\n";
|
| 793 |
|
|
} elsif (hasContent($FORM::origStateOther)) {
|
| 794 |
|
|
$orig .= "<administrativeArea>$FORM::origStateOther";
|
| 795 |
|
|
$orig .= "</administrativeArea>\n";
|
| 796 |
|
|
}
|
| 797 |
|
|
if (hasContent($FORM::origZIP)) {
|
| 798 |
|
|
$orig .= "<postalCode>$FORM::origZIP</postalCode>\n";
|
| 799 |
|
|
}
|
| 800 |
|
|
if (hasContent($FORM::origCountry)) {
|
| 801 |
|
|
$orig .= "<country>$FORM::origCountry</country>\n";
|
| 802 |
|
|
}
|
| 803 |
|
|
$orig .= "</address>\n";
|
| 804 |
|
|
}
|
| 805 |
|
|
|
| 806 |
|
|
if (hasContent($FORM::origPhone)) {
|
| 807 |
|
|
$orig .= "<phone>$FORM::origPhone</phone>\n";
|
| 808 |
|
|
}
|
| 809 |
|
|
if (hasContent($FORM::origFAX)) {
|
| 810 |
|
|
$orig .= "<phone phonetype=\"Fax\">$FORM::origFAX</phone>\n";
|
| 811 |
|
|
}
|
| 812 |
|
|
if (hasContent($FORM::origEmail)) {
|
| 813 |
|
|
$orig .= "<electronicMailAddress>$FORM::origEmail";
|
| 814 |
|
|
$orig .= "</electronicMailAddress>\n";
|
| 815 |
|
|
}
|
| 816 |
|
|
$dso = "<$role>\n$orig</$role>\n";
|
| 817 |
|
|
|
| 818 |
|
|
$creat .= $dso;
|
| 819 |
|
|
|
| 820 |
|
|
if ($FORM::useOrigAddress) {
|
| 821 |
|
|
# Add a contact originator like the original with a different role
|
| 822 |
|
|
$cont .= "<contact>\n";
|
| 823 |
1977
|
jones
|
$cont .= $orig;
|
| 824 |
|
|
$cont .= "</contact>\n";
|
| 825 |
1929
|
brooke
|
} else {
|
| 826 |
|
|
$cont .= "<contact>\n";
|
| 827 |
|
|
|
| 828 |
|
|
$cont .= "<individualName>\n";
|
| 829 |
|
|
$cont .= "<givenName>$FORM::origNamefirstContact</givenName>\n";
|
| 830 |
|
|
$cont .= "<surName>$FORM::origNamelastContact</surName>\n";
|
| 831 |
|
|
$cont .= "</individualName>\n";
|
| 832 |
|
|
|
| 833 |
1977
|
jones
|
if (hasContent($FORM::origNameOrgContact)) {
|
| 834 |
|
|
$cont .= "<organizationName>$FORM::origNameOrgContact</organizationName>\n";
|
| 835 |
|
|
}
|
| 836 |
1929
|
brooke
|
|
| 837 |
|
|
if (hasContent($FORM::origDeliveryContact) ||
|
| 838 |
|
|
hasContent($FORM::origCityContact) ||
|
| 839 |
|
|
(hasContent($FORM::origStateContact) &&
|
| 840 |
|
|
($FORM::origStateContact !~ "Select state here.")) ||
|
| 841 |
|
|
hasContent($FORM::origStateOtherContact) ||
|
| 842 |
|
|
hasContent($FORM::origZIPContact) ||
|
| 843 |
|
|
hasContent($FORM::origCountryContact)) {
|
| 844 |
|
|
$cont .= "<address>\n";
|
| 845 |
|
|
if (hasContent($FORM::origDeliveryContact)) {
|
| 846 |
|
|
$cont .= "<deliveryPoint>$FORM::origDeliveryContact";
|
| 847 |
|
|
$cont .= "</deliveryPoint>\n";
|
| 848 |
|
|
}
|
| 849 |
|
|
if (hasContent($FORM::origCityContact)) {
|
| 850 |
|
|
$cont .= "<city>$FORM::origCityContact</city>\n";
|
| 851 |
|
|
}
|
| 852 |
|
|
if (hasContent($FORM::origStateContact) &&
|
| 853 |
|
|
($FORM::origStateContact !~ "Select state here.")) {
|
| 854 |
|
|
$cont .= "<administrativeArea>$FORM::origStateContact";
|
| 855 |
|
|
$cont .= "</administrativeArea>\n";
|
| 856 |
|
|
} elsif (hasContent($FORM::origStateOtherContact)) {
|
| 857 |
|
|
$cont .= "<administrativeArea>$FORM::origStateOtherContact";
|
| 858 |
|
|
$cont .= "</administrativeArea>\n";
|
| 859 |
|
|
}
|
| 860 |
|
|
if (hasContent($FORM::origZIPContact)) {
|
| 861 |
|
|
$cont .= "<postalCode>$FORM::origZIPContact</postalCode>\n";
|
| 862 |
|
|
}
|
| 863 |
|
|
if (hasContent($FORM::origCountryContact)) {
|
| 864 |
|
|
$cont .= "<country>$FORM::origCountryContact</country>\n";
|
| 865 |
|
|
}
|
| 866 |
|
|
$cont .= "</address>\n";
|
| 867 |
|
|
}
|
| 868 |
|
|
if (hasContent($FORM::origPhoneContact)) {
|
| 869 |
|
|
$cont .= "<phone>$FORM::origPhoneContact</phone>\n";
|
| 870 |
|
|
}
|
| 871 |
1977
|
jones
|
if (hasContent($FORM::origFAXContact)) {
|
| 872 |
|
|
$cont .= "<phone phonetype=\"Fax\">$FORM::origFAXContact</phone>\n";
|
| 873 |
|
|
}
|
| 874 |
1929
|
brooke
|
if (hasContent($FORM::origEmailContact)) {
|
| 875 |
|
|
$cont .= "<electronicMailAddress>$FORM::origEmailContact";
|
| 876 |
|
|
$cont .= "</electronicMailAddress>\n";
|
| 877 |
|
|
}
|
| 878 |
1977
|
jones
|
$cont .= "</contact>\n";
|
| 879 |
1929
|
brooke
|
}
|
| 880 |
|
|
|
| 881 |
|
|
$metaP .= "<metadataProvider>\n";
|
| 882 |
|
|
$metaP .= "<individualName>\n";
|
| 883 |
|
|
$metaP .= "<givenName>$FORM::providerGivenName</givenName>\n";
|
| 884 |
|
|
$metaP .= "<surName>$FORM::providerSurName</surName>\n";
|
| 885 |
|
|
$metaP .= "</individualName>\n";
|
| 886 |
|
|
$metaP .= "</metadataProvider>\n";
|
| 887 |
|
|
|
| 888 |
|
|
# Additional originators
|
| 889 |
|
|
foreach my $tmp (param()) {
|
| 890 |
|
|
if ($tmp =~ /origNamelast/){
|
| 891 |
|
|
my $tmp1 = $tmp;
|
| 892 |
|
|
$tmp1 =~ s/origNamelast//; # get the index of the parameter 0 to 10
|
| 893 |
|
|
if ( $tmp1 eq '1'
|
| 894 |
|
|
|| $tmp1 eq '2'
|
| 895 |
|
|
|| $tmp1 eq '3'
|
| 896 |
|
|
|| $tmp1 eq '4'
|
| 897 |
|
|
|| $tmp1 eq '5'
|
| 898 |
|
|
|| $tmp1 eq '6'
|
| 899 |
|
|
|| $tmp1 eq '7'
|
| 900 |
|
|
|| $tmp1 eq '8'
|
| 901 |
|
|
|| $tmp1 eq '9'
|
| 902 |
|
|
|| $tmp1 eq '10'
|
| 903 |
|
|
) {
|
| 904 |
|
|
|
| 905 |
|
|
# do not generate XML for empty originator fields
|
| 906 |
|
|
if (hasContent(param("origNamefirst" . $tmp1))) {
|
| 907 |
|
|
|
| 908 |
1977
|
jones
|
my $add = "";
|
| 909 |
|
|
$add .= "<individualName>\n";
|
| 910 |
|
|
$add .= "<givenName>";
|
| 911 |
|
|
$add .= param("origNamefirst" . $tmp1);
|
| 912 |
|
|
$add .= "</givenName>\n";
|
| 913 |
|
|
$add .= "<surName>";
|
| 914 |
|
|
$add .= param("origNamelast" . $tmp1);
|
| 915 |
|
|
$add .= "</surName>\n";
|
| 916 |
|
|
$add .= "</individualName>\n";
|
| 917 |
|
|
|
| 918 |
|
|
if(param("origRole" . $tmp1) eq "Originator"){
|
| 919 |
|
|
$creat .= "<creator>\n";
|
| 920 |
|
|
$creat .= $add;
|
| 921 |
|
|
$creat .= "</creator>\n";
|
| 922 |
1929
|
brooke
|
}
|
| 923 |
1977
|
jones
|
elsif(param("origRole" . $tmp1) eq "Metadata Provider"){
|
| 924 |
|
|
$metaP .= "<metadataProvider>\n";
|
| 925 |
|
|
$metaP .= $add;
|
| 926 |
|
|
$metaP .= "</metadataProvider>\n";
|
| 927 |
|
|
}
|
| 928 |
|
|
elsif((param("origRole" . $tmp1) eq "Publisher") && ($publ eq "")){
|
| 929 |
|
|
$publ .= "<publisher>\n";
|
| 930 |
|
|
$publ .= $add;
|
| 931 |
|
|
$publ .= "</publisher>\n";
|
| 932 |
|
|
}
|
| 933 |
|
|
else{
|
| 934 |
|
|
$apart .= "<associatedParty>\n";
|
| 935 |
|
|
$apart .= $add;
|
| 936 |
|
|
$apart .= "<role>";
|
| 937 |
|
|
$apart .= param("origRole" . $tmp1);
|
| 938 |
|
|
$apart .= "</role>\n";
|
| 939 |
|
|
$apart .= "</associatedParty>\n";
|
| 940 |
|
|
}
|
| 941 |
1929
|
brooke
|
}
|
| 942 |
1977
|
jones
|
}
|
| 943 |
|
|
}
|
| 944 |
1929
|
brooke
|
}
|
| 945 |
|
|
|
| 946 |
|
|
$creat .= "<creator>\n";
|
| 947 |
|
|
$creat .= "<organizationName>$FORM::site</organizationName>\n";
|
| 948 |
|
|
$creat .= "</creator>\n";
|
| 949 |
|
|
|
| 950 |
|
|
$creat .= "<creator>\n";
|
| 951 |
|
|
$creat .= "<organizationName>$organization</organizationName>\n";
|
| 952 |
|
|
$creat .= "</creator>\n";
|
| 953 |
|
|
|
| 954 |
1977
|
jones
|
if ($FORM::cfg eq 'nceas') {
|
| 955 |
|
|
for (my $i = 0; $i < scalar(@FORM::wg); $i++) {
|
| 956 |
|
|
$creat .= "<creator>\n";
|
| 957 |
|
|
$creat .= "<organizationName>$FORM::wg[$i]</organizationName>\n";
|
| 958 |
|
|
$creat .= "</creator>\n";
|
| 959 |
|
|
}
|
| 960 |
|
|
}
|
| 961 |
1929
|
brooke
|
$doc .= $creat;
|
| 962 |
|
|
$doc .= $metaP;
|
| 963 |
|
|
$doc .= $apart;
|
| 964 |
|
|
|
| 965 |
|
|
$doc .= "<abstract>\n";
|
| 966 |
|
|
$doc .= "<para>$FORM::abstract</para>\n";
|
| 967 |
|
|
$doc .= "</abstract>\n";
|
| 968 |
|
|
|
| 969 |
|
|
# Keyword information
|
| 970 |
|
|
foreach my $tmp (param()) {
|
| 971 |
|
|
if ($tmp =~ /keyword/) {
|
| 972 |
|
|
my $tmp1 = $tmp;
|
| 973 |
|
|
$tmp1 =~ s/keyword//; # get the index of the parameter 0, ..., 10
|
| 974 |
|
|
if ( $tmp1 =~ /[0-9]/ ){
|
| 975 |
|
|
# don't generate xml for empty keyword fields
|
| 976 |
|
|
# don't generate taxonomic keyword fields, those go in taxonomic coverage
|
| 977 |
|
|
if (hasContent(param($tmp))) {
|
| 978 |
|
|
$doc .= "<keywordSet>\n";
|
| 979 |
|
|
$doc .= "<keyword ";
|
| 980 |
|
|
if (hasContent(param("kwType" . $tmp1)) &&
|
| 981 |
|
|
(param("kwType" . $tmp1) !~ "none") ) {
|
| 982 |
|
|
$doc .= "keywordType=\"";
|
| 983 |
|
|
$doc .= param("kwType" . $tmp1);
|
| 984 |
|
|
$doc .= "\"";
|
| 985 |
|
|
}
|
| 986 |
|
|
$doc .= ">";
|
| 987 |
|
|
$doc .= param("keyword" . $tmp1);
|
| 988 |
|
|
$doc .= "</keyword>\n";
|
| 989 |
|
|
$doc .= "<keywordThesaurus>";
|
| 990 |
|
|
$doc .= param("kwTh" . $tmp1);
|
| 991 |
|
|
$doc .= "</keywordThesaurus>\n";
|
| 992 |
|
|
$doc .= "</keywordSet>\n";
|
| 993 |
|
|
}
|
| 994 |
|
|
}
|
| 995 |
|
|
}
|
| 996 |
|
|
}
|
| 997 |
|
|
|
| 998 |
|
|
if (hasContent($FORM::addComments)) {
|
| 999 |
|
|
$doc .= "<additionalInfo>\n";
|
| 1000 |
|
|
$doc .= "<para>$FORM::addComments</para>\n";
|
| 1001 |
|
|
$doc .= "</additionalInfo>\n";
|
| 1002 |
|
|
}
|
| 1003 |
|
|
|
| 1004 |
|
|
if (hasContent($FORM::useConstraints) ||
|
| 1005 |
|
|
hasContent($FORM::useConstraintsOther)) {
|
| 1006 |
|
|
$doc .= "<intellectualRights>\n";
|
| 1007 |
|
|
if (hasContent($FORM::useConstraints)) {
|
| 1008 |
|
|
$doc .= "<para>$FORM::useConstraints</para>\n";
|
| 1009 |
|
|
}
|
| 1010 |
|
|
if (hasContent($FORM::useConstraintsOther)) {
|
| 1011 |
|
|
$doc .= "<para>$FORM::useConstraintsOther</para>\n";
|
| 1012 |
|
|
}
|
| 1013 |
|
|
$doc .= "</intellectualRights>\n";
|
| 1014 |
|
|
}
|
| 1015 |
|
|
|
| 1016 |
|
|
|
| 1017 |
|
|
if (hasContent($FORM::url)) {
|
| 1018 |
1977
|
jones
|
$doc .= "<distribution>\n";
|
| 1019 |
1929
|
brooke
|
$doc .= "<online>\n";
|
| 1020 |
1977
|
jones
|
$doc .= "<url>$FORM::url</url>\n";
|
| 1021 |
|
|
$doc .= "</online>\n";
|
| 1022 |
|
|
$doc .= "</distribution>\n";
|
| 1023 |
1929
|
brooke
|
}
|
| 1024 |
|
|
|
| 1025 |
|
|
$doc .= "<distribution>\n";
|
| 1026 |
|
|
$doc .= "<offline>\n";
|
| 1027 |
|
|
$doc .= "<mediumName>" . "$FORM::dataMedium $FORM::dataMediumOther";
|
| 1028 |
|
|
$doc .= "</mediumName>\n";
|
| 1029 |
|
|
$doc .= "</offline>\n";
|
| 1030 |
|
|
$doc .= "</distribution>\n";
|
| 1031 |
|
|
|
| 1032 |
|
|
$doc .= "<coverage>\n";
|
| 1033 |
|
|
$doc .= "<temporalCoverage>\n";
|
| 1034 |
|
|
|
| 1035 |
|
|
|
| 1036 |
|
|
if (hasContent($FORM::endingYear)) {
|
| 1037 |
1977
|
jones
|
$doc .= "<rangeOfDates>\n";
|
| 1038 |
|
|
if (hasContent($FORM::beginningMonth)) {
|
| 1039 |
|
|
my $month = ("JAN","FEB","MAR","APR","MAY","JUN",
|
| 1040 |
|
|
"JUL","AUG","SEP","OCT","NOV","DEC")
|
| 1041 |
|
|
[$FORM::beginningMonth - 1];
|
| 1042 |
|
|
$doc .= "<beginDate>\n";
|
| 1043 |
|
|
$doc .= "<calendarDate>";
|
| 1044 |
|
|
$doc .= "$FORM::beginningYear-$FORM::beginningMonth-$FORM::beginningDay";
|
| 1045 |
|
|
$doc .= "</calendarDate>\n";
|
| 1046 |
|
|
$doc .= "</beginDate>\n";
|
| 1047 |
|
|
} else {
|
| 1048 |
|
|
$doc .= "<beginDate>\n";
|
| 1049 |
|
|
$doc .= "<calendarDate>";
|
| 1050 |
|
|
$doc .= "$FORM::beginningYear";
|
| 1051 |
|
|
$doc .= "</calendarDate>\n";
|
| 1052 |
|
|
$doc .= "</beginDate>\n";
|
| 1053 |
|
|
}
|
| 1054 |
1929
|
brooke
|
|
| 1055 |
1977
|
jones
|
if (hasContent($FORM::endingMonth)) {
|
| 1056 |
|
|
my $month = ("JAN","FEB","MAR","APR","MAY","JUN",
|
| 1057 |
|
|
"JUL","AUG","SEP","OCT","NOV","DEC")
|
| 1058 |
|
|
[$FORM::endingMonth - 1];
|
| 1059 |
|
|
$doc .= "<endDate>\n";
|
| 1060 |
|
|
$doc .= "<calendarDate>";
|
| 1061 |
|
|
$doc .= "$FORM::endingYear-$FORM::endingMonth-$FORM::endingDay";
|
| 1062 |
|
|
$doc .= "</calendarDate>\n";
|
| 1063 |
|
|
$doc .= "</endDate>\n";
|
| 1064 |
1929
|
brooke
|
} else {
|
| 1065 |
1977
|
jones
|
$doc .= "<endDate>\n";
|
| 1066 |
|
|
$doc .= "<calendarDate>";
|
| 1067 |
|
|
$doc .= "$FORM::endingYear";
|
| 1068 |
|
|
$doc .= "</calendarDate>\n";
|
| 1069 |
|
|
$doc .= "</endDate>\n";
|
| 1070 |
1929
|
brooke
|
}
|
| 1071 |
1977
|
jones
|
$doc .= "</rangeOfDates>\n";
|
| 1072 |
|
|
} else {
|
| 1073 |
|
|
$doc .= "<singleDateTime>\n";
|
| 1074 |
|
|
if (hasContent($FORM::beginningMonth)) {
|
| 1075 |
|
|
my $month = ("JAN","FEB","MAR","APR","MAY","JUN",
|
| 1076 |
|
|
"JUL","AUG","SEP","OCT","NOV","DEC")
|
| 1077 |
|
|
[$FORM::beginningMonth - 1];
|
| 1078 |
|
|
$doc .= "<calendarDate>";
|
| 1079 |
|
|
$doc .= "$FORM::beginningYear-$FORM::beginningMonth-$FORM::beginningDay";
|
| 1080 |
|
|
$doc .= "</calendarDate>\n";
|
| 1081 |
|
|
} else {
|
| 1082 |
|
|
$doc .= "<calendarDate>";
|
| 1083 |
|
|
$doc .= "$FORM::beginningYear";
|
| 1084 |
|
|
$doc .= "</calendarDate>\n";
|
| 1085 |
|
|
}
|
| 1086 |
|
|
$doc .= "</singleDateTime>\n";
|
| 1087 |
|
|
}
|
| 1088 |
1929
|
brooke
|
|
| 1089 |
|
|
$doc .= "</temporalCoverage>\n";
|
| 1090 |
|
|
|
| 1091 |
|
|
$doc .= "<geographicCoverage>\n";
|
| 1092 |
1983
|
jones
|
$doc .= "<geographicDescription>$FORM::geogdesc</geographicDescription>\n";
|
| 1093 |
1929
|
brooke
|
$doc .= "<boundingCoordinates>\n";
|
| 1094 |
|
|
|
| 1095 |
|
|
# if the second latitude is missing, then set the second lat/long pair
|
| 1096 |
|
|
# equal to the first this makes a point appear like a rectangle
|
| 1097 |
|
|
if ($FORM::latDeg2 == 0 && $FORM::latMin2 == 0 && $FORM::latSec2 == 0) {
|
| 1098 |
|
|
|
| 1099 |
|
|
$latDeg2 = $latDeg1;
|
| 1100 |
|
|
$latMin2 = $latMin1;
|
| 1101 |
|
|
$latSec2 = $latSec1;
|
| 1102 |
|
|
$hemisphLat2 = $hemisphLat1;
|
| 1103 |
|
|
$longDeg2 = $longDeg1;
|
| 1104 |
|
|
$longMin2 = $longMin1;
|
| 1105 |
|
|
$longSec2 = $longSec1;
|
| 1106 |
|
|
$hemisphLong2 = $hemisphLong1;
|
| 1107 |
|
|
}
|
| 1108 |
|
|
else
|
| 1109 |
|
|
{
|
| 1110 |
|
|
$latDeg2 = $FORM::latDeg2;
|
| 1111 |
|
|
$latMin2 = $FORM::latMin2;
|
| 1112 |
|
|
$latSec2 = $FORM::latSec2;
|
| 1113 |
|
|
$hemisphLat2 = $FORM::hemisphLat2;
|
| 1114 |
|
|
$longDeg2 = $FORM::longDeg2;
|
| 1115 |
|
|
$longMin2 = $FORM::longMin2;
|
| 1116 |
|
|
$longSec2 = $FORM::longSec2;
|
| 1117 |
|
|
$hemisphLong2 = $FORM::hemisphLong2;
|
| 1118 |
|
|
}
|
| 1119 |
|
|
|
| 1120 |
|
|
|
| 1121 |
|
|
my $hemisph;
|
| 1122 |
|
|
$hemisph = ($hemisphLong1 eq "W") ? -1 : 1;
|
| 1123 |
|
|
$doc .= "<westBoundingCoordinate>";
|
| 1124 |
|
|
$doc .= $hemisph * ($longDeg1 + (60*$longMin1+$longSec1)/3600);
|
| 1125 |
|
|
$doc .= "</westBoundingCoordinate>\n";
|
| 1126 |
|
|
|
| 1127 |
|
|
$hemisph = ($hemisphLong2 eq "W") ? -1 : 1;
|
| 1128 |
|
|
$doc .= "<eastBoundingCoordinate>";
|
| 1129 |
|
|
$doc .= $hemisph * ($longDeg2 + (60*$longMin2+$longSec2)/3600);
|
| 1130 |
|
|
$doc .= "</eastBoundingCoordinate>\n";
|
| 1131 |
|
|
|
| 1132 |
|
|
$hemisph = ($hemisphLat1 eq "S") ? -1 : 1;
|
| 1133 |
|
|
$doc .= "<northBoundingCoordinate>";
|
| 1134 |
|
|
$doc .= $hemisph * ($latDeg1 + (60*$latMin1+$latSec1)/3600);
|
| 1135 |
|
|
$doc .= "</northBoundingCoordinate>\n";
|
| 1136 |
|
|
|
| 1137 |
|
|
$hemisph = ($hemisphLat2 eq "S") ? -1 : 1;
|
| 1138 |
|
|
$doc .= "<southBoundingCoordinate>";
|
| 1139 |
|
|
$doc .= $hemisph * ($latDeg2 + (60*$latMin2+$latSec2)/3600);
|
| 1140 |
|
|
$doc .= "</southBoundingCoordinate>\n";
|
| 1141 |
|
|
|
| 1142 |
|
|
$doc .= "</boundingCoordinates>\n";
|
| 1143 |
|
|
$doc .= "</geographicCoverage>\n";
|
| 1144 |
|
|
|
| 1145 |
1984
|
jones
|
# Write out the taxonomic coverage fields
|
| 1146 |
|
|
my $foundFirstTaxon = 0;
|
| 1147 |
|
|
foreach my $trn (param()) {
|
| 1148 |
|
|
if ($trn =~ /taxonRankName/) {
|
| 1149 |
|
|
my $taxIndex = $trn;
|
| 1150 |
|
|
$taxIndex =~ s/taxonRankName//; # get the index of the parameter 0, ..., 10
|
| 1151 |
|
|
my $trv = "taxonRankValue".$taxIndex;
|
| 1152 |
|
|
if ( $taxIndex =~ /[0-9]/ ){
|
| 1153 |
|
|
if (hasContent(param($trn)) && hasContent(param($trv))) {
|
| 1154 |
|
|
if (! $foundFirstTaxon) {
|
| 1155 |
|
|
$doc .= "<taxonomicCoverage>\n";
|
| 1156 |
|
|
$foundFirstTaxon = 1;
|
| 1157 |
1985
|
jones
|
if (hasContent($FORM::taxaAuth)) {
|
| 1158 |
|
|
$doc .= "<generalTaxonomicCoverage>".$FORM::taxaAuth."</generalTaxonomicCoverage>\n";
|
| 1159 |
|
|
}
|
| 1160 |
1984
|
jones
|
}
|
| 1161 |
|
|
$doc .= "<taxonomicClassification>\n";
|
| 1162 |
|
|
$doc .= " <taxonRankName>".param($trn)."</taxonRankName>\n";
|
| 1163 |
|
|
$doc .= " <taxonRankValue>".param($trv)."</taxonRankValue>\n";
|
| 1164 |
|
|
$doc .= "</taxonomicClassification>\n";
|
| 1165 |
|
|
}
|
| 1166 |
|
|
}
|
| 1167 |
|
|
}
|
| 1168 |
|
|
}
|
| 1169 |
|
|
if ($foundFirstTaxon) {
|
| 1170 |
|
|
$doc .= "</taxonomicCoverage>\n";
|
| 1171 |
|
|
}
|
| 1172 |
1929
|
brooke
|
|
| 1173 |
|
|
$doc .= "</coverage>\n";
|
| 1174 |
|
|
|
| 1175 |
|
|
$doc .= $cont;
|
| 1176 |
|
|
$doc .= $publ;
|
| 1177 |
1982
|
jones
|
|
| 1178 |
|
|
if ((hasContent($FORM::methodTitle)) || scalar(@FORM::methodsPara) > 0) {
|
| 1179 |
|
|
my $methods = "<methods><methodStep><description><section>\n";
|
| 1180 |
|
|
if (hasContent($FORM::methodTitle)) {
|
| 1181 |
|
|
$methods .= "<title>$FORM::methodTitle</title>\n";
|
| 1182 |
|
|
}
|
| 1183 |
|
|
for (my $i = 0; $i < scalar(@FORM::methodPara); $i++) {
|
| 1184 |
|
|
$methods .= "<para>$FORM::methodPara[$i]</para>\n";
|
| 1185 |
|
|
}
|
| 1186 |
1989
|
jones
|
$methods .= "</section></description></methodStep>\n";
|
| 1187 |
|
|
if (hasContent($FORM::studyExtentDescription)) {
|
| 1188 |
|
|
$methods .= "<sampling><studyExtent><description>\n";
|
| 1189 |
|
|
$methods .= "<para>$FORM::studyExtentDescription</para>\n";
|
| 1190 |
|
|
$methods .= "</description></studyExtent>\n";
|
| 1191 |
|
|
$methods .= "<samplingDescription>\n";
|
| 1192 |
|
|
$methods .= "<para>$FORM::samplingDescription</para>\n";
|
| 1193 |
|
|
$methods .= "</samplingDescription>\n";
|
| 1194 |
|
|
$methods .= "</sampling>\n";
|
| 1195 |
|
|
}
|
| 1196 |
|
|
$methods .= "</methods>\n";
|
| 1197 |
1982
|
jones
|
$doc .= $methods;
|
| 1198 |
|
|
}
|
| 1199 |
1929
|
brooke
|
|
| 1200 |
|
|
$doc .= "<access authSystem=\"knb\" order=\"denyFirst\">\n";
|
| 1201 |
|
|
$doc .= "<allow>\n";
|
| 1202 |
|
|
$doc .= "<principal>uid=obfsadmin,o=LTER,dc=ecoinformatics,dc=org</principal>\n";
|
| 1203 |
|
|
$doc .= "<permission>all</permission>\n";
|
| 1204 |
|
|
$doc .= "</allow>\n";
|
| 1205 |
|
|
$doc .= "<allow>\n";
|
| 1206 |
|
|
$doc .= "<principal>uid=$FORM::username,o=$FORM::organization,dc=ecoinformatics,dc=org</principal>\n";
|
| 1207 |
|
|
$doc .= "<permission>all</permission>\n";
|
| 1208 |
|
|
$doc .= "</allow>\n";
|
| 1209 |
|
|
$doc .= "<allow>\n";
|
| 1210 |
|
|
$doc .= "<principal>public</principal>\n";
|
| 1211 |
|
|
$doc .= "<permission>read</permission>\n";
|
| 1212 |
|
|
$doc .= "</allow>\n";
|
| 1213 |
|
|
$doc .= "</access>\n";
|
| 1214 |
|
|
|
| 1215 |
|
|
$doc .= "</dataset>\n</eml:eml>\n";
|
| 1216 |
|
|
|
| 1217 |
|
|
return $doc;
|
| 1218 |
|
|
}
|
| 1219 |
|
|
|
| 1220 |
|
|
|
| 1221 |
|
|
################################################################################
|
| 1222 |
|
|
#
|
| 1223 |
|
|
# send an email message notifying the moderator of a new submission
|
| 1224 |
|
|
#
|
| 1225 |
|
|
################################################################################
|
| 1226 |
|
|
sub sendNotification {
|
| 1227 |
|
|
my $identifier = shift;
|
| 1228 |
|
|
my $mailhost = shift;
|
| 1229 |
|
|
my $sender = shift;
|
| 1230 |
|
|
my $recipient = shift;
|
| 1231 |
|
|
|
| 1232 |
|
|
my $smtp = Net::SMTP->new($mailhost);
|
| 1233 |
|
|
$smtp->mail($sender);
|
| 1234 |
|
|
$smtp->to($recipient);
|
| 1235 |
|
|
|
| 1236 |
|
|
my $message = <<" ENDOFMESSAGE";
|
| 1237 |
|
|
To: $recipient
|
| 1238 |
|
|
From: $sender
|
| 1239 |
|
|
Subject: New data submission
|
| 1240 |
|
|
|
| 1241 |
|
|
Data was submitted to the data registry.
|
| 1242 |
|
|
The identifying information for the new data set is:
|
| 1243 |
|
|
|
| 1244 |
|
|
Identifier: $identifier
|
| 1245 |
|
|
Title: $FORM::title
|
| 1246 |
|
|
Submitter: $FORM::providerGivenName $FORM::providerSurName
|
| 1247 |
|
|
|
| 1248 |
|
|
Please review the submmission and grant public read access if appropriate.
|
| 1249 |
|
|
Thanks
|
| 1250 |
|
|
|
| 1251 |
|
|
ENDOFMESSAGE
|
| 1252 |
|
|
$message =~ s/^[ \t\r\f]+//gm;
|
| 1253 |
|
|
|
| 1254 |
|
|
$smtp->data($message);
|
| 1255 |
|
|
$smtp->quit;
|
| 1256 |
|
|
}
|
| 1257 |
|
|
|
| 1258 |
|
|
|
| 1259 |
|
|
################################################################################
|
| 1260 |
|
|
#
|
| 1261 |
|
|
# read the eml document and send back a form with values filled in.
|
| 1262 |
|
|
#
|
| 1263 |
|
|
################################################################################
|
| 1264 |
|
|
sub modifyData {
|
| 1265 |
|
|
|
| 1266 |
|
|
# create metacat instance
|
| 1267 |
|
|
my $metacat;
|
| 1268 |
|
|
my $docid = $FORM::docid;
|
| 1269 |
|
|
my $httpMessage;
|
| 1270 |
|
|
my $doc;
|
| 1271 |
|
|
my $xmldoc;
|
| 1272 |
|
|
my $findType;
|
| 1273 |
|
|
my $parser = XML::LibXML->new();
|
| 1274 |
|
|
my @fileArray;
|
| 1275 |
|
|
my $pushDoc;
|
| 1276 |
|
|
my $alreadyInArray;
|
| 1277 |
|
|
my $node;
|
| 1278 |
|
|
my $response;
|
| 1279 |
|
|
my $element;
|
| 1280 |
|
|
my $tempfile;
|
| 1281 |
|
|
|
| 1282 |
|
|
$metacat = Metacat->new();
|
| 1283 |
|
|
if ($metacat) {
|
| 1284 |
|
|
$metacat->set_options( metacatUrl => $metacatUrl );
|
| 1285 |
|
|
} else {
|
| 1286 |
|
|
#die "failed during metacat creation\n";
|
| 1287 |
|
|
push(@errorMessages, "Failed during metacat creation.");
|
| 1288 |
|
|
}
|
| 1289 |
|
|
|
| 1290 |
|
|
$httpMessage = $metacat->read($docid);
|
| 1291 |
|
|
$doc = $httpMessage->content();
|
| 1292 |
|
|
$xmldoc = $parser->parse_string($doc);
|
| 1293 |
|
|
|
| 1294 |
1977
|
jones
|
#$tempfile = $xslConvDir.$docid;
|
| 1295 |
|
|
#push (@fileArray, $tempfile);
|
| 1296 |
1929
|
brooke
|
|
| 1297 |
|
|
if ($xmldoc eq "") {
|
| 1298 |
1977
|
jones
|
$error ="Error in parsing the eml document";
|
| 1299 |
|
|
push(@errorMessages, $error);
|
| 1300 |
1929
|
brooke
|
} else {
|
| 1301 |
1977
|
jones
|
$findType = $xmldoc->findnodes('//dataset/identifier');
|
| 1302 |
|
|
if ($findType->size() > 0) {
|
| 1303 |
|
|
# This is a eml beta6 document
|
| 1304 |
|
|
# Read the documents mentioned in triples also
|
| 1305 |
|
|
|
| 1306 |
|
|
$findType = $xmldoc->findnodes('//dataset/triple');
|
| 1307 |
|
|
if ($findType->size() > 0) {
|
| 1308 |
|
|
foreach $node ($findType->get_nodelist) {
|
| 1309 |
|
|
$pushDoc = findValue($node, 'subject');
|
| 1310 |
|
|
|
| 1311 |
|
|
# If the file is already in @fileArray then do not add it
|
| 1312 |
|
|
$alreadyInArray = 0;
|
| 1313 |
|
|
foreach $element (@fileArray) {
|
| 1314 |
|
|
$tempfile = $tmpdir."/".$pushDoc;
|
| 1315 |
|
|
if ($element eq $pushDoc) {
|
| 1316 |
|
|
$alreadyInArray = 1;
|
| 1317 |
|
|
}
|
| 1318 |
|
|
}
|
| 1319 |
|
|
|
| 1320 |
|
|
if (!$alreadyInArray) {
|
| 1321 |
|
|
$tempfile = $tmpdir."/".$pushDoc;
|
| 1322 |
|
|
$response = "";
|
| 1323 |
|
|
$response = $metacat->read($pushDoc);
|
| 1324 |
|
|
if (! $response) {
|
| 1325 |
|
|
# could not read
|
| 1326 |
|
|
#push(@errorMessages, $response);
|
| 1327 |
|
|
push(@errorMessages, $metacat->getMessage());
|
| 1328 |
|
|
push(@errorMessages, "Failed during reading.\n");
|
| 1329 |
|
|
} else {
|
| 1330 |
|
|
my $xdoc = $response->content();
|
| 1331 |
|
|
#$tempfile = $xslConvDir.$pushDoc;
|
| 1332 |
|
|
open (TFILE,">$tempfile") ||
|
| 1333 |
|
|
die ("Cant open xml file... $tempfile\n");
|
| 1334 |
|
|
print TFILE $xdoc;
|
| 1335 |
|
|
close(TFILE);
|
| 1336 |
|
|
push (@fileArray, $tempfile);
|
| 1337 |
|
|
}
|
| 1338 |
|
|
}
|
| 1339 |
|
|
}
|
| 1340 |
|
|
}
|
| 1341 |
1929
|
brooke
|
|
| 1342 |
1977
|
jones
|
# Read the main document.
|
| 1343 |
1929
|
brooke
|
|
| 1344 |
1977
|
jones
|
$tempfile = $tmpdir."/".$docid; #= $xslConvDir.$docid;
|
| 1345 |
|
|
open (TFILE,">$tempfile") || die ("Cant open xml file...\n");
|
| 1346 |
|
|
print TFILE $doc;
|
| 1347 |
|
|
close(TFILE);
|
| 1348 |
|
|
|
| 1349 |
|
|
# Transforming beta6 to eml 2
|
| 1350 |
|
|
my $xslt;
|
| 1351 |
|
|
my $triplesheet;
|
| 1352 |
|
|
my $results;
|
| 1353 |
|
|
my $stylesheet;
|
| 1354 |
|
|
my $resultsheet;
|
| 1355 |
|
|
|
| 1356 |
|
|
$xslt = XML::LibXSLT->new();
|
| 1357 |
|
|
#$tempfile = $xslConvDir."triple_info.xsl";
|
| 1358 |
|
|
$tempfile = $tmpdir."/"."triple_info.xsl";
|
| 1359 |
|
|
|
| 1360 |
|
|
$triplesheet = $xslt->parse_stylesheet_file($tempfile);
|
| 1361 |
1929
|
brooke
|
|
| 1362 |
1977
|
jones
|
#$results = $triplesheet->transform($xmldoc, packageDir => "\'$tmpdir/\'", packageName => "\'$docid\'");
|
| 1363 |
|
|
$results = $triplesheet->transform($xmldoc, packageDir => "\'$tmpdir/\'", packageName => "\'$docid\'");
|
| 1364 |
1929
|
brooke
|
|
| 1365 |
1977
|
jones
|
#$tempfile = $xslConvDir."emlb6toeml2.xsl";
|
| 1366 |
|
|
$tempfile = $tmpdir."/"."emlb6toeml2.xsl";
|
| 1367 |
|
|
$stylesheet = $xslt->parse_stylesheet_file($tempfile);
|
| 1368 |
|
|
$resultsheet = $stylesheet->transform($results);
|
| 1369 |
|
|
|
| 1370 |
|
|
#$tempfile = "/usr/local/apache2/htdocs/xml/test.xml";;
|
| 1371 |
|
|
#open (TFILE,">$tempfile") || die ("Cant open xml file...\n");
|
| 1372 |
|
|
#print TFILE $stylesheet->output_string($resultsheet);
|
| 1373 |
|
|
#close(TFILE);
|
| 1374 |
1929
|
brooke
|
|
| 1375 |
1977
|
jones
|
getFormValuesFromEml2($resultsheet);
|
| 1376 |
|
|
|
| 1377 |
|
|
# Delete the files written earlier.
|
| 1378 |
|
|
unlink @fileArray;
|
| 1379 |
1929
|
brooke
|
|
| 1380 |
1977
|
jones
|
} else {
|
| 1381 |
|
|
getFormValuesFromEml2($xmldoc);
|
| 1382 |
|
|
}
|
| 1383 |
1929
|
brooke
|
}
|
| 1384 |
|
|
|
| 1385 |
|
|
if (scalar(@errorMessages)) {
|
| 1386 |
1979
|
jones
|
# if any errors, print them in the response template
|
| 1387 |
|
|
$$templateVars{'status'} = 'failure';
|
| 1388 |
|
|
$$templateVars{'errorMessages'} = \@errorMessages;
|
| 1389 |
|
|
$error = 1;
|
| 1390 |
|
|
$$templateVars{'function'} = "modification";
|
| 1391 |
|
|
$$templateVars{'section'} = "Modification Status";
|
| 1392 |
|
|
$template->process( $responseTemplate, $templateVars);
|
| 1393 |
1929
|
brooke
|
} else {
|
| 1394 |
|
|
$$templateVars{'form'} = 're_entry';
|
| 1395 |
1977
|
jones
|
$template->process( $entryFormTemplate, $templateVars);
|
| 1396 |
1929
|
brooke
|
}
|
| 1397 |
|
|
}
|
| 1398 |
|
|
|
| 1399 |
1977
|
jones
|
################################################################################
|
| 1400 |
|
|
#
|
| 1401 |
|
|
# Parse an EML 2.0.0 file and extract the metadata into perl variables for
|
| 1402 |
|
|
# processing and returning to the template processor
|
| 1403 |
|
|
#
|
| 1404 |
|
|
################################################################################
|
| 1405 |
1929
|
brooke
|
sub getFormValuesFromEml2 {
|
| 1406 |
|
|
|
| 1407 |
|
|
my $doc = shift;
|
| 1408 |
|
|
my $results;
|
| 1409 |
|
|
my $error;
|
| 1410 |
|
|
my $node;
|
| 1411 |
|
|
my $tempResult;
|
| 1412 |
|
|
my $tempNode;
|
| 1413 |
|
|
my $aoCount = 1;
|
| 1414 |
|
|
my $foundDSO;
|
| 1415 |
|
|
|
| 1416 |
|
|
# find out the tag <alternateIdentifier>.
|
| 1417 |
|
|
$results = $doc->findnodes('//dataset/alternateIdentifier');
|
| 1418 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1419 |
|
|
errMoreThanOne("alternateIdentifier");
|
| 1420 |
1929
|
brooke
|
} else {
|
| 1421 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1422 |
|
|
$$templateVars{'identifier'} = findValue($node, '../alternateIdentifier');
|
| 1423 |
|
|
}
|
| 1424 |
1929
|
brooke
|
}
|
| 1425 |
|
|
|
| 1426 |
|
|
# find out the tag <title>.
|
| 1427 |
|
|
$results = $doc->findnodes('//dataset/title');
|
| 1428 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1429 |
|
|
errMoreThanOne("title");
|
| 1430 |
|
|
} elsif ($results->size() < 1) {
|
| 1431 |
|
|
$error ="Following tag not found: title. Please use Morpho to edit this document";
|
| 1432 |
|
|
push(@errorMessages, $error."\n");
|
| 1433 |
|
|
#if ($DEBUG == 1){ print $error;}
|
| 1434 |
1929
|
brooke
|
} else {
|
| 1435 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1436 |
|
|
$$templateVars{'title'} = findValue($node, '../title');
|
| 1437 |
|
|
}
|
| 1438 |
1929
|
brooke
|
}
|
| 1439 |
|
|
|
| 1440 |
|
|
# find out the tag <creator>.
|
| 1441 |
|
|
$results = $doc->findnodes('//dataset/creator/individualName');
|
| 1442 |
1979
|
jones
|
debug("Registry: Creators: ".$results->size());
|
| 1443 |
1977
|
jones
|
if ($results->size() > 11) {
|
| 1444 |
|
|
errMoreThanN("creator/individualName");
|
| 1445 |
1929
|
brooke
|
} else {
|
| 1446 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1447 |
|
|
dontOccur($node, "../positionName|../onlineURL|../userId",
|
| 1448 |
|
|
"positionName, onlineURL, userId");
|
| 1449 |
|
|
|
| 1450 |
|
|
dontOccur($node, "./saluation", "saluation");
|
| 1451 |
|
|
|
| 1452 |
1979
|
jones
|
debug("Registry: Checking a creator in loop 1...");
|
| 1453 |
1977
|
jones
|
$tempResult = $node->findnodes('../address|../phone|../electronicmailAddress|../organizationName');
|
| 1454 |
|
|
if($tempResult->size > 0) {
|
| 1455 |
|
|
if($foundDSO == 0) {
|
| 1456 |
|
|
$foundDSO = 1;
|
| 1457 |
1929
|
brooke
|
|
| 1458 |
1979
|
jones
|
debug("Registry: Recording a creator in loop 1...");
|
| 1459 |
1977
|
jones
|
$$templateVars{'origNamefirst0'} = findValue($node, 'givenName');
|
| 1460 |
|
|
$$templateVars{'origNamelast0'} = findValue($node, 'surName');
|
| 1461 |
|
|
|
| 1462 |
|
|
my $tempResult2 = $node->findnodes('../address');
|
| 1463 |
|
|
if ($tempResult2->size > 1) {
|
| 1464 |
|
|
errMoreThanOne("address");
|
| 1465 |
|
|
} else {
|
| 1466 |
|
|
foreach my $tempNode2 ($tempResult2->get_nodelist) {
|
| 1467 |
|
|
$$templateVars{'origDelivery'} = findValue($tempNode2, 'deliveryPoint');
|
| 1468 |
|
|
$$templateVars{'origCity'} = findValue($tempNode2, 'city');
|
| 1469 |
|
|
$$templateVars{'origState'} = findValue($tempNode2, 'administrativeArea');
|
| 1470 |
|
|
$$templateVars{'origZIP'} = findValue($tempNode2, 'postalCode');
|
| 1471 |
|
|
$$templateVars{'origCountry'} = findValue($tempNode2, 'country');
|
| 1472 |
|
|
}
|
| 1473 |
|
|
}
|
| 1474 |
|
|
|
| 1475 |
|
|
my $tempResult3 = $node->findnodes('../phone');
|
| 1476 |
|
|
if ($tempResult3->size > 2) {
|
| 1477 |
|
|
errMoreThanN("phone");
|
| 1478 |
|
|
} else {
|
| 1479 |
|
|
foreach my $tempNode2 ($tempResult3->get_nodelist) {
|
| 1480 |
|
|
if ($tempNode2->hasAttributes()) {
|
| 1481 |
|
|
my @attlist = $tempNode2->attributes();
|
| 1482 |
|
|
if ($attlist[0]->value eq "Fax") {
|
| 1483 |
|
|
$$templateVars{'origFAX'} = $tempNode2->textContent();
|
| 1484 |
|
|
} else {
|
| 1485 |
|
|
$$templateVars{'origPhone'} = $tempNode2->textContent();
|
| 1486 |
|
|
}
|
| 1487 |
|
|
} else {
|
| 1488 |
|
|
$$templateVars{'origPhone'} = $tempNode2->textContent();
|
| 1489 |
|
|
}
|
| 1490 |
|
|
}
|
| 1491 |
|
|
}
|
| 1492 |
|
|
$$templateVars{'origEmail'} = findValue($node, '../electronicMailAddress');
|
| 1493 |
|
|
$$templateVars{'origNameOrg'} = findValue($node, '../organizationName');
|
| 1494 |
|
|
} else {
|
| 1495 |
|
|
errMoreThanN("address, phone and electronicMailAddress");
|
| 1496 |
|
|
}
|
| 1497 |
|
|
}
|
| 1498 |
|
|
}
|
| 1499 |
|
|
foreach $node ($results->get_nodelist) {
|
| 1500 |
1979
|
jones
|
debug("Registry: Checking a creator in loop 2...");
|
| 1501 |
|
|
$tempResult = $node->findnodes('../address|../phone|../electronicmailAddress|../organizationName');
|
| 1502 |
1977
|
jones
|
if ($tempResult->size == 0) {
|
| 1503 |
|
|
if ($foundDSO == 0) {
|
| 1504 |
1979
|
jones
|
debug("Registry: Recording a creator in loop 2 block A...");
|
| 1505 |
1977
|
jones
|
$foundDSO = 1;
|
| 1506 |
|
|
$$templateVars{'origNamefirst0'} = findValue($node, 'givenName');
|
| 1507 |
|
|
$$templateVars{'origNamelast0'} = findValue($node, 'surName');
|
| 1508 |
|
|
$$templateVars{'origNameOrg'} = findValue($node, '../organizationName');
|
| 1509 |
|
|
} else {
|
| 1510 |
1979
|
jones
|
debug("Registry: Recording a creator in loop 2 block B...");
|
| 1511 |
1977
|
jones
|
$$templateVars{"origNamefirst$aoCount"} = findValue($node, './givenName');
|
| 1512 |
|
|
$$templateVars{"origNamelast$aoCount"} = findValue($node, './surName');
|
| 1513 |
|
|
$$templateVars{"origRole$aoCount"} = "Originator";
|
| 1514 |
|
|
$aoCount++;
|
| 1515 |
|
|
}
|
| 1516 |
|
|
}
|
| 1517 |
|
|
}
|
| 1518 |
1929
|
brooke
|
}
|
| 1519 |
|
|
|
| 1520 |
|
|
$results = $doc->findnodes('//dataset/creator/organizationName');
|
| 1521 |
1979
|
jones
|
my $wgroups = $doc->findnodes("//dataset/creator/organizationName[contains(text(),'(NCEAS ')]");
|
| 1522 |
|
|
debug("Registry: Number Org: ".$results->size());
|
| 1523 |
|
|
debug("Registry: Number WG: ".$wgroups->size());
|
| 1524 |
|
|
if ($results->size() - $wgroups->size() > 3) {
|
| 1525 |
1977
|
jones
|
errMoreThanN("creator/organizationName");
|
| 1526 |
1929
|
brooke
|
} else {
|
| 1527 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1528 |
|
|
my $tempValue = findValue($node,'../organizationName');
|
| 1529 |
|
|
$tempResult = $node->findnodes('../individualName');
|
| 1530 |
|
|
if ($tempResult->size == 0 && $tempValue ne $organization) {
|
| 1531 |
|
|
$$templateVars{'site'} = $tempValue;
|
| 1532 |
|
|
}
|
| 1533 |
|
|
}
|
| 1534 |
1979
|
jones
|
if ($FORM::cfg == 'nceas') {
|
| 1535 |
|
|
my @wg;
|
| 1536 |
|
|
foreach $node ($results->get_nodelist) {
|
| 1537 |
|
|
my $tempValue = findValue($node,'../organizationName');
|
| 1538 |
|
|
$wg[scalar(@wg)] = $tempValue;
|
| 1539 |
|
|
}
|
| 1540 |
|
|
my $projects = getProjectList();
|
| 1541 |
|
|
$$templateVars{'projects'} = $projects;
|
| 1542 |
|
|
$$templateVars{'wg'} = \@wg;
|
| 1543 |
|
|
}
|
| 1544 |
1929
|
brooke
|
}
|
| 1545 |
|
|
|
| 1546 |
|
|
$results = $doc->findnodes('//dataset/metadataProvider');
|
| 1547 |
1977
|
jones
|
if ($results->size() > 11) {
|
| 1548 |
|
|
errMoreThanN("metadataProvider");
|
| 1549 |
1929
|
brooke
|
} else {
|
| 1550 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1551 |
|
|
dontOccur($node, "./organizationName|./positionName|./onlineURL|./userId|./electronicMailAddress|./phone|./address",
|
| 1552 |
|
|
"organizationName, positionName, onlineURL, userId, electronicMailAddress, phone, address in metadataProvider");
|
| 1553 |
|
|
|
| 1554 |
|
|
$tempResult = $node->findnodes('./individualName');
|
| 1555 |
|
|
if ($tempResult->size > 1) {
|
| 1556 |
|
|
errMoreThanOne("metadataProvider/indvidualName");
|
| 1557 |
|
|
} else {
|
| 1558 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1559 |
|
|
if ($$templateVars{'providerGivenName'} ne "") {
|
| 1560 |
|
|
$$templateVars{"origNamefirst$aoCount"} = findValue($tempNode, './givenName');
|
| 1561 |
|
|
$$templateVars{"origNamelast$aoCount"} = findValue($tempNode, './surName');
|
| 1562 |
|
|
$$templateVars{"origRole$aoCount"} = "Metadata Provider";
|
| 1563 |
|
|
$aoCount++;
|
| 1564 |
|
|
} else {
|
| 1565 |
|
|
$$templateVars{'providerGivenName'} = findValue($tempNode, './givenName');
|
| 1566 |
|
|
$$templateVars{'providerSurName'} = findValue($tempNode, './surName');
|
| 1567 |
|
|
}
|
| 1568 |
|
|
}
|
| 1569 |
|
|
}
|
| 1570 |
|
|
}
|
| 1571 |
1929
|
brooke
|
}
|
| 1572 |
|
|
|
| 1573 |
|
|
$results = $doc->findnodes('//dataset/associatedParty');
|
| 1574 |
1977
|
jones
|
if ($results->size() > 10) {
|
| 1575 |
|
|
errMoreThanN("associatedParty");
|
| 1576 |
1929
|
brooke
|
} else {
|
| 1577 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1578 |
|
|
dontOccur($node, "./organizationName|./positionName|./onlineURL|./userId|./electronicMailAddress|./phone|./address",
|
| 1579 |
|
|
"organizationName, positionName, onlineURL, userId, electronicMailAddress, phone, address in associatedParty");
|
| 1580 |
|
|
|
| 1581 |
|
|
$tempResult = $node->findnodes('./individualName');
|
| 1582 |
|
|
if ($tempResult->size > 1) {
|
| 1583 |
|
|
errMoreThanOne("associatedParty/indvidualName");
|
| 1584 |
|
|
} else {
|
| 1585 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1586 |
|
|
$$templateVars{"origNamefirst$aoCount"} = findValue($tempNode, './givenName');
|
| 1587 |
|
|
$$templateVars{"origNamelast$aoCount"} = findValue($tempNode, './surName');
|
| 1588 |
|
|
$$templateVars{"origRole$aoCount"} = findValue($tempNode, '../role');
|
| 1589 |
|
|
$aoCount++;
|
| 1590 |
|
|
}
|
| 1591 |
|
|
}
|
| 1592 |
|
|
}
|
| 1593 |
1929
|
brooke
|
}
|
| 1594 |
|
|
|
| 1595 |
|
|
$results = $doc->findnodes('//dataset/publisher');
|
| 1596 |
1977
|
jones
|
if ($results->size() > 10) {
|
| 1597 |
|
|
errMoreThanN("publisher");
|
| 1598 |
1929
|
brooke
|
} else {
|
| 1599 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1600 |
|
|
dontOccur($node, "./organizationName|./positionName|./onlineURL|./userId|./electronicMailAddress|./phone|./address",
|
| 1601 |
|
|
"organizationName, positionName, onlineURL, userId, electronicMailAddress, phone, address in associatedParty");
|
| 1602 |
|
|
|
| 1603 |
|
|
$tempResult = $node->findnodes('./individualName');
|
| 1604 |
|
|
if ($tempResult->size > 1) {
|
| 1605 |
|
|
errMoreThanOne("publisher/indvidualName");
|
| 1606 |
|
|
} else {
|
| 1607 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1608 |
|
|
$$templateVars{"origNamefirst$aoCount"} = findValue($tempNode, './givenName');
|
| 1609 |
|
|
$$templateVars{"origNamelast$aoCount"} = findValue($tempNode, './surName');
|
| 1610 |
|
|
$$templateVars{"origRole$aoCount"} = "Publisher";
|
| 1611 |
|
|
$aoCount++;
|
| 1612 |
|
|
}
|
| 1613 |
|
|
}
|
| 1614 |
|
|
}
|
| 1615 |
1929
|
brooke
|
}
|
| 1616 |
|
|
|
| 1617 |
1977
|
jones
|
if ($aoCount > 11) {
|
| 1618 |
|
|
errMoreThanN("Additional Originators");
|
| 1619 |
1929
|
brooke
|
}
|
| 1620 |
|
|
|
| 1621 |
|
|
dontOccur($doc, "./pubDate", "pubDate");
|
| 1622 |
|
|
dontOccur($doc, "./language", "language");
|
| 1623 |
|
|
dontOccur($doc, "./series", "series");
|
| 1624 |
|
|
|
| 1625 |
|
|
$results = $doc->findnodes('//dataset/abstract');
|
| 1626 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1627 |
|
|
errMoreThanOne("abstract");
|
| 1628 |
1929
|
brooke
|
} else {
|
| 1629 |
1977
|
jones
|
foreach my $node ($results->get_nodelist) {
|
| 1630 |
|
|
dontOccur($node, "./section", "section");
|
| 1631 |
|
|
$$templateVars{'abstract'} = findValueNoChild($node, "para");
|
| 1632 |
|
|
}
|
| 1633 |
1929
|
brooke
|
}
|
| 1634 |
|
|
|
| 1635 |
|
|
$results = $doc->findnodes('//dataset/keywordSet');
|
| 1636 |
1977
|
jones
|
if ($results->size() > 10) {
|
| 1637 |
|
|
errMoreThanN("keywordSet");
|
| 1638 |
1929
|
brooke
|
} else {
|
| 1639 |
1977
|
jones
|
my $count = 0;
|
| 1640 |
|
|
foreach $node ($results->get_nodelist) {
|
| 1641 |
|
|
$tempResult = $node->findnodes('./keyword');
|
| 1642 |
|
|
if ($tempResult->size() > 1) {
|
| 1643 |
|
|
errMoreThanOne("keyword");
|
| 1644 |
|
|
} else {
|
| 1645 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1646 |
|
|
$$templateVars{"keyword$count"} = $tempNode->textContent();
|
| 1647 |
|
|
if ($tempNode->hasAttributes()) {
|
| 1648 |
|
|
my @attlist = $tempNode->attributes();
|
| 1649 |
|
|
$$templateVars{"kwType$count"} = $attlist[0]->value;
|
| 1650 |
|
|
}
|
| 1651 |
|
|
}
|
| 1652 |
|
|
}
|
| 1653 |
|
|
$$templateVars{"kwTh$count"} = findValue($node, "keywordThesaurus");
|
| 1654 |
|
|
$count++;
|
| 1655 |
|
|
}
|
| 1656 |
|
|
|
| 1657 |
|
|
while ($count<11) {
|
| 1658 |
|
|
$$templateVars{"kwType$count"} = "none";
|
| 1659 |
|
|
$$templateVars{"kwTh$count"} = "none";
|
| 1660 |
|
|
$count++;
|
| 1661 |
|
|
}
|
| 1662 |
1929
|
brooke
|
}
|
| 1663 |
|
|
|
| 1664 |
|
|
$results = $doc->findnodes('//dataset/additionalInfo');
|
| 1665 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1666 |
|
|
errMoreThanOne("additionalInfo");
|
| 1667 |
1929
|
brooke
|
} else {
|
| 1668 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1669 |
|
|
dontOccur($node, "./section", "section");
|
| 1670 |
|
|
$$templateVars{'addComments'} = findValueNoChild($node, "para");
|
| 1671 |
|
|
}
|
| 1672 |
1929
|
brooke
|
}
|
| 1673 |
|
|
|
| 1674 |
|
|
$$templateVars{'useConstraints'} = "";
|
| 1675 |
|
|
$results = $doc->findnodes('//dataset/intellectualRights');
|
| 1676 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1677 |
|
|
errMoreThanOne("intellectualRights");
|
| 1678 |
1929
|
brooke
|
} else {
|
| 1679 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1680 |
|
|
dontOccur($node, "./section", "section in intellectualRights");
|
| 1681 |
1929
|
brooke
|
|
| 1682 |
1977
|
jones
|
$tempResult = $node->findnodes("para");
|
| 1683 |
|
|
if ($tempResult->size > 2) {
|
| 1684 |
|
|
errMoreThanN("para");
|
| 1685 |
|
|
} else {
|
| 1686 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1687 |
|
|
my $childNodes = $tempNode->childNodes;
|
| 1688 |
|
|
if ($childNodes->size() > 1) {
|
| 1689 |
|
|
$error ="The tag para in intellectualRights has children which cannot be shown using the form. Please use Morpho to edit this document";
|
| 1690 |
|
|
push(@errorMessages, $error);
|
| 1691 |
|
|
#if ($DEBUG == 1){ print $error."\n";}
|
| 1692 |
|
|
} else {
|
| 1693 |
|
|
#print $tempNode->nodeName().":".$tempNode->textContent();
|
| 1694 |
|
|
#print "\n";
|
| 1695 |
|
|
if ($$templateVars{'useConstraints'} eq "") {
|
| 1696 |
|
|
$$templateVars{'useConstraints'} = $tempNode->textContent();
|
| 1697 |
|
|
} else {
|
| 1698 |
|
|
$$templateVars{'useConstraintsOther'} = $tempNode->textContent();
|
| 1699 |
|
|
}
|
| 1700 |
|
|
}
|
| 1701 |
|
|
}
|
| 1702 |
|
|
}
|
| 1703 |
|
|
}
|
| 1704 |
1929
|
brooke
|
}
|
| 1705 |
|
|
|
| 1706 |
|
|
$results = $doc->findnodes('//dataset/distribution/online');
|
| 1707 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1708 |
|
|
errMoreThanOne("distribution/online");
|
| 1709 |
1929
|
brooke
|
} else {
|
| 1710 |
1977
|
jones
|
foreach my $tempNode ($results->get_nodelist){
|
| 1711 |
|
|
$$templateVars{'url'} = findValue($tempNode, "url");
|
| 1712 |
|
|
dontOccur($tempNode, "./connection", "/distribution/online/connection");
|
| 1713 |
|
|
dontOccur($tempNode, "./connectionDefinition", "/distribution/online/connectionDefinition");
|
| 1714 |
|
|
}
|
| 1715 |
1929
|
brooke
|
}
|
| 1716 |
|
|
|
| 1717 |
|
|
$results = $doc->findnodes('//dataset/distribution/offline');
|
| 1718 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1719 |
|
|
errMoreThanOne("distribution/online");
|
| 1720 |
1929
|
brooke
|
} else {
|
| 1721 |
1977
|
jones
|
foreach my $tempNode ($results->get_nodelist) {
|
| 1722 |
|
|
$$templateVars{'dataMedium'} = findValue($tempNode, "mediumName");
|
| 1723 |
|
|
dontOccur($tempNode, "./mediumDensity", "/distribution/offline/mediumDensity");
|
| 1724 |
|
|
dontOccur($tempNode, "./mediumDensityUnits", "/distribution/offline/mediumDensityUnits");
|
| 1725 |
|
|
dontOccur($tempNode, "./mediumVolume", "/distribution/offline/mediumVolume");
|
| 1726 |
|
|
dontOccur($tempNode, "./mediumFormat", "/distribution/offline/mediumFormat");
|
| 1727 |
|
|
dontOccur($tempNode, "./mediumNote", "/distribution/offline/mediumNote");
|
| 1728 |
|
|
}
|
| 1729 |
1929
|
brooke
|
}
|
| 1730 |
|
|
|
| 1731 |
|
|
dontOccur($doc, "./inline", "//dataset/distribution/inline");
|
| 1732 |
|
|
|
| 1733 |
|
|
$results = $doc->findnodes('//dataset/coverage');
|
| 1734 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1735 |
|
|
errMoreThanOne("coverage");
|
| 1736 |
1929
|
brooke
|
} else {
|
| 1737 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1738 |
1985
|
jones
|
dontOccur($node, "./temporalCoverage/rangeOfDates/beginDate/time|./temporalCoverage/rangeOfDates/beginDate/alternativeTimeScale|./temporalCoverage/rangeOfDates/endDate/time|./temporalCoverage/rangeOfDates/endDate/alternativeTimeScale|./taxonomicCoverage/taxonomicSystem|./taxonomicCoverage/taxonomicClassification/commonName|./taxonomicCoverage/taxonomicClassification/taxonomicClassification|./geographicCoverage/datasetGPolygon|./geographicCoverage/boundingCoordinates/boundingAltitudes", "temporalCoverage/rangeOfDates/beginDate/time, /temporalCoverage/rangeOfDates/beginDate/alternativeTimeScale, /temporalCoverage/rangeOfDates/endDate/time, /temporalCoverage/rangeOfDates/endDate/alternativeTimeScale, /taxonomicCoverage/taxonomicSystem, /taxonomicCoverage/taxonomicClassification/commonName, /taxonomicCoverage/taxonomicClassification/taxonomicClassification, /geographicCoverage/datasetGPolygon, /geographicCoverage/boundingCoordinates/boundingAltitudes");
|
| 1739 |
1929
|
brooke
|
|
| 1740 |
1977
|
jones
|
$tempResult = $node->findnodes('./temporalCoverage');
|
| 1741 |
|
|
if ($tempResult->size > 1) {
|
| 1742 |
|
|
errMoreThanOne("temporalCoverage");
|
| 1743 |
|
|
} else {
|
| 1744 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1745 |
|
|
my $x;
|
| 1746 |
|
|
my $y;
|
| 1747 |
|
|
my $z;
|
| 1748 |
|
|
my $tempdate = findValue($tempNode, "rangeOfDates/beginDate/calendarDate");
|
| 1749 |
|
|
($x, $y, $z) = split("-", $tempdate);
|
| 1750 |
|
|
$$templateVars{'beginningYear'} = $x;
|
| 1751 |
|
|
$$templateVars{'beginningMonth'} = $y;
|
| 1752 |
|
|
$$templateVars{'beginningDay'} = $z;
|
| 1753 |
|
|
|
| 1754 |
|
|
$tempdate = findValue($tempNode, "rangeOfDates/endDate/calendarDate");
|
| 1755 |
|
|
($x, $y, $z) = split("-", $tempdate);
|
| 1756 |
|
|
$$templateVars{'endingYear'} = $x;
|
| 1757 |
|
|
$$templateVars{'endingMonth'} = $y;
|
| 1758 |
|
|
$$templateVars{'endingDay'} = $z;
|
| 1759 |
|
|
|
| 1760 |
|
|
$tempdate = "";
|
| 1761 |
|
|
$tempdate = findValue($tempNode, "singleDateTime/calendarDate");
|
| 1762 |
|
|
if($tempdate ne ""){
|
| 1763 |
|
|
($x, $y, $z) = split("-", $tempdate);
|
| 1764 |
|
|
$$templateVars{'beginningYear'} = $x;
|
| 1765 |
|
|
$$templateVars{'beginningMonth'} = $y;
|
| 1766 |
|
|
$$templateVars{'beginningDay'} = $z;
|
| 1767 |
|
|
}
|
| 1768 |
|
|
}
|
| 1769 |
|
|
}
|
| 1770 |
1929
|
brooke
|
|
| 1771 |
1977
|
jones
|
$tempResult = $node->findnodes('./geographicCoverage');
|
| 1772 |
|
|
if ($tempResult->size > 1) {
|
| 1773 |
|
|
errMoreThanOne("geographicCoverage");
|
| 1774 |
|
|
} else {
|
| 1775 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1776 |
1983
|
jones
|
my $geogdesc = findValue($tempNode, "geographicDescription");
|
| 1777 |
|
|
debug("Registry: geogdesc from xml is: $geogdesc");
|
| 1778 |
|
|
$$templateVars{'geogdesc'} = $geogdesc;
|
| 1779 |
|
|
my $coord = findValue($tempNode, "boundingCoordinates/westBoundingCoordinate");
|
| 1780 |
1977
|
jones
|
if ($coord > 0) {
|
| 1781 |
|
|
#print "+";
|
| 1782 |
|
|
$$templateVars{'hemisphLong1'} = "E";
|
| 1783 |
|
|
} else {
|
| 1784 |
|
|
#print "-";
|
| 1785 |
|
|
eval($coord = $coord * -1);
|
| 1786 |
|
|
$$templateVars{'hemisphLong1'} = "W";
|
| 1787 |
|
|
}
|
| 1788 |
|
|
eval($$templateVars{'longDeg1'} = int($coord));
|
| 1789 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1790 |
|
|
eval($$templateVars{'longMin1'} = int($coord));
|
| 1791 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1792 |
|
|
eval($$templateVars{'longSec1'} = int($coord));
|
| 1793 |
|
|
|
| 1794 |
|
|
$coord = findValue($tempNode, "boundingCoordinates/southBoundingCoordinate");
|
| 1795 |
|
|
if ($coord > 0) {
|
| 1796 |
|
|
#print "+";
|
| 1797 |
|
|
$$templateVars{'hemisphLat2'} = "N";
|
| 1798 |
|
|
} else {
|
| 1799 |
|
|
#print "-";
|
| 1800 |
|
|
eval($coord = $coord * -1);
|
| 1801 |
|
|
$$templateVars{'hemisphLat2'} = "S";
|
| 1802 |
|
|
}
|
| 1803 |
|
|
eval($$templateVars{'latDeg2'} = int($coord));
|
| 1804 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1805 |
|
|
eval($$templateVars{'latMin2'} = int($coord));
|
| 1806 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1807 |
|
|
eval($$templateVars{'latSec2'} = int($coord));
|
| 1808 |
|
|
|
| 1809 |
|
|
$coord = findValue($tempNode, "boundingCoordinates/northBoundingCoordinate");
|
| 1810 |
|
|
if ($coord > 0) {
|
| 1811 |
|
|
#print "+";
|
| 1812 |
|
|
$$templateVars{'hemisphLat1'} = "N";
|
| 1813 |
|
|
} else {
|
| 1814 |
|
|
#print "-";
|
| 1815 |
|
|
eval($coord = $coord * -1);
|
| 1816 |
|
|
$$templateVars{'hemisphLat1'} = "S";
|
| 1817 |
|
|
}
|
| 1818 |
|
|
eval($$templateVars{'latDeg1'} = int($coord));
|
| 1819 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1820 |
|
|
eval($$templateVars{'latMin1'} = int($coord));
|
| 1821 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1822 |
|
|
eval($$templateVars{'latSec1'} = int($coord));
|
| 1823 |
|
|
|
| 1824 |
|
|
$coord = findValue($tempNode, "boundingCoordinates/eastBoundingCoordinate");
|
| 1825 |
|
|
if ($coord > 0) {
|
| 1826 |
|
|
#print "+";
|
| 1827 |
|
|
$$templateVars{'hemisphLong2'} = "E";
|
| 1828 |
|
|
} else {
|
| 1829 |
|
|
#print "-";
|
| 1830 |
|
|
eval($coord = $coord * -1);
|
| 1831 |
|
|
$$templateVars{'hemisphLong2'} = "W";
|
| 1832 |
|
|
}
|
| 1833 |
|
|
eval($$templateVars{'longDeg2'} = int($coord));
|
| 1834 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1835 |
|
|
eval($$templateVars{'longMin2'} = int($coord));
|
| 1836 |
|
|
eval($coord = ($coord - int($coord))*60);
|
| 1837 |
|
|
eval($$templateVars{'longSec2'} = int($coord));
|
| 1838 |
|
|
}
|
| 1839 |
|
|
}
|
| 1840 |
1984
|
jones
|
|
| 1841 |
|
|
$tempResult = $node->findnodes('./taxonomicCoverage/taxonomicClassification');
|
| 1842 |
|
|
my $taxonIndex = 0;
|
| 1843 |
|
|
foreach $tempNode ($tempResult->get_nodelist) {
|
| 1844 |
|
|
$taxonIndex++;
|
| 1845 |
|
|
my $taxonRankName = findValue($tempNode, "taxonRankName");
|
| 1846 |
|
|
my $taxonRankValue = findValue($tempNode, "taxonRankValue");
|
| 1847 |
|
|
$$templateVars{"taxonRankName".$taxonIndex} = $taxonRankName;
|
| 1848 |
|
|
$$templateVars{"taxonRankValue".$taxonIndex} = $taxonRankValue;
|
| 1849 |
|
|
}
|
| 1850 |
|
|
$$templateVars{'taxaCount'} = $taxonIndex;
|
| 1851 |
1985
|
jones
|
my $taxaAuth = findValue($node, "./taxonomicCoverage/generalTaxonomicCoverage");
|
| 1852 |
|
|
$$templateVars{'taxaAuth'} = $taxaAuth;
|
| 1853 |
1977
|
jones
|
}
|
| 1854 |
1929
|
brooke
|
}
|
| 1855 |
|
|
dontOccur($doc, "./purpose", "purpose");
|
| 1856 |
|
|
dontOccur($doc, "./maintenance", "maintnance");
|
| 1857 |
|
|
|
| 1858 |
|
|
$results = $doc->findnodes('//dataset/contact/individualName');
|
| 1859 |
1977
|
jones
|
if ($results->size() > 1) {
|
| 1860 |
|
|
errMoreThanOne("contact/individualName");
|
| 1861 |
1929
|
brooke
|
} else {
|
| 1862 |
1977
|
jones
|
foreach $node ($results->get_nodelist) {
|
| 1863 |
|
|
dontOccur($node, "../positionName|../onlineURL|../userId",
|
| 1864 |
|
|
"positionName, onlineURL, userId in contact tag");
|
| 1865 |
|
|
dontOccur($node, "./saluation", "saluation in contact tag");
|
| 1866 |
|
|
|
| 1867 |
|
|
$tempResult = $node->findnodes('../address|../phone|../electronicmailAddress|../organizationName');
|
| 1868 |
|
|
if ($tempResult->size > 0) {
|
| 1869 |
|
|
$$templateVars{'origNamefirstContact'} = findValue($node, 'givenName');
|
| 1870 |
|
|
$$templateVars{'origNamelastContact'} = findValue($node, 'surName');
|
| 1871 |
|
|
|
| 1872 |
|
|
my $tempResult2 = $node->findnodes('../address');
|
| 1873 |
|
|
if ($tempResult2->size > 1) {
|
| 1874 |
|
|
errMoreThanOne("address");
|
| 1875 |
|
|
} else {
|
| 1876 |
|
|
foreach my $tempNode2 ($tempResult2->get_nodelist) {
|
| 1877 |
|
|
$$templateVars{'origDeliveryContact'} = findValue($tempNode2, 'deliveryPoint');
|
| 1878 |
|
|
$$templateVars{'origCityContact'} = findValue($tempNode2, 'city');
|
| 1879 |
|
|
$$templateVars{'origStateContact'} = findValue($tempNode2, 'administrativeArea');
|
| 1880 |
|
|
$$templateVars{'origZIPContact'} = findValue($tempNode2, 'postalCode');
|
| 1881 |
|
|
$$templateVars{'origCountryContact'} = findValue($tempNode2, 'country');
|
| 1882 |
|
|
}
|
| 1883 |
|
|
}
|
| 1884 |
|
|
|
| 1885 |
|
|
my $tempResult3 = $node->findnodes('../phone');
|
| 1886 |
|
|
if ($tempResult3->size > 2) {
|
| 1887 |
|
|
errMoreThanN("phone");
|
| 1888 |
|
|
} else {
|
| 1889 |
|
|
foreach my $tempNode2 ($tempResult3->get_nodelist) {
|
| 1890 |
|
|
if ($tempNode2->hasAttributes()) {
|
| 1891 |
|
|
my @attlist = $tempNode2->attributes();
|
| 1892 |
|
|
if ($attlist[0]->value eq "Fax") {
|
| 1893 |
|
|
$$templateVars{'origFAXContact'} = $tempNode2->textContent();
|
| 1894 |
|
|
} else {
|
| 1895 |
|
|
$$templateVars{'origPhoneContact'} = $tempNode2->textContent();
|
| 1896 |
|
|
}
|
| 1897 |
|
|
} else {
|
| 1898 |
|
|
$$templateVars{'origPhoneContact'} = $tempNode2->textContent();
|
| 1899 |
|
|
}
|
| 1900 |
|
|
}
|
| 1901 |
|
|
}
|
| 1902 |
|
|
$$templateVars{'origEmailContact'} = findValue($node, '../electronicMailAddress');
|
| 1903 |
|
|
$$templateVars{'origNameOrgContact'} = findValue($node, '../organizationName');
|
| 1904 |
|
|
} else {
|
| 1905 |
|
|
$$templateVars{'origNamefirstContact'} = findValue($node, 'givenName');
|
| 1906 |
|
|
$$templateVars{'origNamelastContact'} = findValue($node, 'surName');
|
| 1907 |
|
|
$$templateVars{'origNameOrgContact'} = findValue($node, '../organizationName');
|
| 1908 |
|
|
}
|
| 1909 |
|
|
}
|
| 1910 |
1929
|
brooke
|
}
|
| 1911 |
|
|
|
| 1912 |
1989
|
jones
|
$results = $doc->findnodes(
|
| 1913 |
|
|
'//dataset/methods/methodStep/description/section');
|
| 1914 |
1982
|
jones
|
debug("Registry: Number methods: ".$results->size());
|
| 1915 |
|
|
if ($results->size() > 1) {
|
| 1916 |
|
|
errMoreThanN("methods/methodStep/description/section");
|
| 1917 |
|
|
} else {
|
| 1918 |
|
|
|
| 1919 |
|
|
my @methodPara;
|
| 1920 |
|
|
foreach $node ($results->get_nodelist) {
|
| 1921 |
|
|
my @children = $node->childNodes;
|
| 1922 |
|
|
for (my $i = 0; $i < scalar(@children); $i++) {
|
| 1923 |
|
|
debug("Registry: Method child loop ($i)");
|
| 1924 |
|
|
my $child = $children[$i];
|
| 1925 |
|
|
if ($child->nodeName eq 'title') {
|
| 1926 |
|
|
my $title = $child->textContent();
|
| 1927 |
|
|
debug("Registry: Method title ($title)");
|
| 1928 |
|
|
$$templateVars{'methodTitle'} = $title;
|
| 1929 |
|
|
} elsif ($child->nodeName eq 'para') {
|
| 1930 |
|
|
my $para = $child->textContent();
|
| 1931 |
|
|
debug("Registry: Method para ($para)");
|
| 1932 |
|
|
$methodPara[scalar(@methodPara)] = $para;
|
| 1933 |
|
|
}
|
| 1934 |
|
|
}
|
| 1935 |
|
|
}
|
| 1936 |
|
|
if (scalar(@methodPara) > 0) {
|
| 1937 |
|
|
$$templateVars{'methodPara'} = \@methodPara;
|
| 1938 |
|
|
}
|
| 1939 |
|
|
}
|
| 1940 |
|
|
|
| 1941 |
1989
|
jones
|
$results = $doc->findnodes(
|
| 1942 |
|
|
'//dataset/methods/sampling/studyExtent/description/para');
|
| 1943 |
|
|
if ($results->size() > 1) {
|
| 1944 |
|
|
errMoreThanN("methods/sampling/studyExtent/description/para");
|
| 1945 |
|
|
} else {
|
| 1946 |
|
|
foreach $node ($results->get_nodelist) {
|
| 1947 |
|
|
my $studyExtentDescription = $node->textContent();
|
| 1948 |
|
|
$$templateVars{'studyExtentDescription'} = $studyExtentDescription;
|
| 1949 |
|
|
}
|
| 1950 |
|
|
}
|
| 1951 |
|
|
|
| 1952 |
|
|
$results = $doc->findnodes(
|
| 1953 |
|
|
'//dataset/methods/sampling/samplingDescription/para');
|
| 1954 |
|
|
if ($results->size() > 1) {
|
| 1955 |
|
|
errMoreThanN("methods/sampling/samplingDescription/para");
|
| 1956 |
|
|
} else {
|
| 1957 |
|
|
foreach $node ($results->get_nodelist) {
|
| 1958 |
|
|
my $samplingDescription = $node->textContent();
|
| 1959 |
|
|
$$templateVars{'samplingDescription'} = $samplingDescription;
|
| 1960 |
|
|
}
|
| 1961 |
|
|
}
|
| 1962 |
|
|
|
| 1963 |
|
|
dontOccur($doc, "//methodStep/citation", "methodStep/citation");
|
| 1964 |
|
|
dontOccur($doc, "//methodStep/protocol", "methodStep/protocol");
|
| 1965 |
|
|
dontOccur($doc, "//methodStep/instrumentation", "methodStep/instrumentation");
|
| 1966 |
|
|
dontOccur($doc, "//methodStep/software", "methodStep/software");
|
| 1967 |
|
|
dontOccur($doc, "//methodStep/subStep", "methodStep/subStep");
|
| 1968 |
|
|
dontOccur($doc, "//methodStep/dataSource", "methodStep/dataSource");
|
| 1969 |
|
|
dontOccur($doc, "//methods/qualityControl", "methods/qualityControl");
|
| 1970 |
|
|
|
| 1971 |
|
|
dontOccur($doc, "//methods/sampling/spatialSamplingUnits", "methods/sampling/spatialSamplingUnits");
|
| 1972 |
|
|
dontOccur($doc, "//methods/sampling/citation", "methods/sampling/citation");
|
| 1973 |
1929
|
brooke
|
dontOccur($doc, "./pubPlace", "pubPlace");
|
| 1974 |
|
|
dontOccur($doc, "./project", "project");
|
| 1975 |
|
|
|
| 1976 |
|
|
dontOccur($doc, "./dataTable", "dataTable");
|
| 1977 |
|
|
dontOccur($doc, "./spatialRaster", "spatialRaster");
|
| 1978 |
|
|
dontOccur($doc, "./spatialVector", "spatialVector");
|
| 1979 |
|
|
dontOccur($doc, "./storedProcedure", "storedProcedure");
|
| 1980 |
|
|
dontOccur($doc, "./view", "view");
|
| 1981 |
|
|
dontOccur($doc, "./otherEntity", "otherEntity");
|
| 1982 |
|
|
dontOccur($doc, "./references", "references");
|
| 1983 |
|
|
|
| 1984 |
|
|
dontOccur($doc, "//citation", "citation");
|
| 1985 |
|
|
dontOccur($doc, "//software", "software");
|
| 1986 |
|
|
dontOccur($doc, "//protocol", "protocol");
|
| 1987 |
|
|
dontOccur($doc, "//additionalMetadata", "additionalMetadata");
|
| 1988 |
|
|
}
|
| 1989 |
|
|
|
| 1990 |
|
|
################################################################################
|
| 1991 |
|
|
#
|
| 1992 |
|
|
# Delete the eml file that has been requested for deletion.
|
| 1993 |
|
|
#
|
| 1994 |
|
|
################################################################################
|
| 1995 |
|
|
sub deleteData {
|
| 1996 |
|
|
my $deleteAll = shift;
|
| 1997 |
|
|
|
| 1998 |
|
|
# create metacat instance
|
| 1999 |
|
|
my $metacat;
|
| 2000 |
|
|
my $docid = $FORM::docid;
|
| 2001 |
|
|
|
| 2002 |
|
|
$metacat = Metacat->new();
|
| 2003 |
|
|
if ($metacat) {
|
| 2004 |
|
|
$metacat->set_options( metacatUrl => $metacatUrl );
|
| 2005 |
|
|
} else {
|
| 2006 |
|
|
#die "failed during metacat creation\n";
|
| 2007 |
|
|
push(@errorMessages, "Failed during metacat creation.");
|
| 2008 |
|
|
}
|
| 2009 |
|
|
|
| 2010 |
|
|
# Login to metacat
|
| 2011 |
|
|
my $userDN = $FORM::username;
|
| 2012 |
|
|
my $userOrg = $FORM::organization;
|
| 2013 |
|
|
my $userPass = $FORM::password;
|
| 2014 |
|
|
my $dname = "uid=$userDN,o=$userOrg,dc=ecoinformatics,dc=org";
|
| 2015 |
|
|
|
| 2016 |
|
|
my $errorMessage = "";
|
| 2017 |
|
|
my $response = $metacat->login($dname, $userPass);
|
| 2018 |
|
|
|
| 2019 |
|
|
if (! $response) {
|
| 2020 |
1977
|
jones
|
# Could not login
|
| 2021 |
1929
|
brooke
|
push(@errorMessages, $metacat->getMessage());
|
| 2022 |
|
|
push(@errorMessages, "Failed during login.\n");
|
| 2023 |
|
|
|
| 2024 |
|
|
} else {
|
| 2025 |
1977
|
jones
|
#Able to login - try to delete the file
|
| 2026 |
1929
|
brooke
|
|
| 2027 |
1977
|
jones
|
my $parser;
|
| 2028 |
|
|
my @fileArray;
|
| 2029 |
|
|
my $httpMessage;
|
| 2030 |
|
|
my $xmldoc;
|
| 2031 |
|
|
my $doc;
|
| 2032 |
|
|
my $pushDoc;
|
| 2033 |
|
|
my $alreadyInArray;
|
| 2034 |
|
|
my $findType;
|
| 2035 |
1929
|
brooke
|
my $node;
|
| 2036 |
1977
|
jones
|
my $response;
|
| 2037 |
|
|
my $element;
|
| 2038 |
1929
|
brooke
|
|
| 2039 |
1977
|
jones
|
push (@fileArray, $docid);
|
| 2040 |
|
|
$parser = XML::LibXML->new();
|
| 2041 |
1929
|
brooke
|
|
| 2042 |
|
|
$httpMessage = $metacat->read($docid);
|
| 2043 |
1977
|
jones
|
$doc = $httpMessage->content();
|
| 2044 |
|
|
$xmldoc = $parser->parse_string($doc);
|
| 2045 |
1929
|
brooke
|
|
| 2046 |
1977
|
jones
|
if ($xmldoc eq "") {
|
| 2047 |
|
|
$error ="Error in parsing the eml document";
|
| 2048 |
|
|
push(@errorMessages, $error);
|
| 2049 |
|
|
} else {
|
| 2050 |
1929
|
brooke
|
|
| 2051 |
1977
|
jones
|
$findType = $xmldoc->findnodes('//dataset/identifier');
|
| 2052 |
|
|
if($findType->size() > 0){
|
| 2053 |
|
|
# This is a eml beta6 document
|
| 2054 |
|
|
# Delete the documents mentioned in triples also
|
| 2055 |
|
|
|
| 2056 |
|
|
$findType = $xmldoc->findnodes('//dataset/triple');
|
| 2057 |
|
|
if($findType->size() > 0){
|
| 2058 |
|
|
foreach $node ($findType->get_nodelist){
|
| 2059 |
|
|
$pushDoc = findValue($node, 'subject');
|
| 2060 |
|
|
|
| 2061 |
|
|
# If the file is already in the @fileArray then do not add it
|
| 2062 |
|
|
$alreadyInArray = 0;
|
| 2063 |
|
|
foreach $element (@fileArray){
|
| 2064 |
|
|
if($element eq $pushDoc){
|
| 2065 |
|
|
$alreadyInArray = 1;
|
| 2066 |
|
|
}
|
| 2067 |
|
|
}
|
| 2068 |
|
|
|
| 2069 |
|
|
if(!$alreadyInArray){
|
| 2070 |
|
|
# If not already in array then delete the file.
|
| 2071 |
|
|
push (@fileArray, $pushDoc);
|
| 2072 |
|
|
$response = $metacat->delete($pushDoc);
|
| 2073 |
|
|
|
| 2074 |
|
|
if (! $response) {
|
| 2075 |
|
|
# Could not delete
|
| 2076 |
|
|
#push(@errorMessages, $response);
|
| 2077 |
|
|
push(@errorMessages, $metacat->getMessage());
|
| 2078 |
|
|
push(@errorMessages, "Failed during deleting $pushDoc. Please check if you are authorized to delete this document.\n");
|
| 2079 |
|
|
}
|
| 2080 |
|
|
}
|
| 2081 |
|
|
}
|
| 2082 |
|
|
}
|
| 2083 |
|
|
}
|
| 2084 |
1929
|
brooke
|
}
|
| 2085 |
|
|
|
| 2086 |
1977
|
jones
|
# Delete the main document.
|
| 2087 |
|
|
if($deleteAll){
|
| 2088 |
|
|
$response = $metacat->delete($docid);
|
| 2089 |
|
|
if (! $response) {
|
| 2090 |
|
|
# Could not delete
|
| 2091 |
|
|
#push(@errorMessages, $response);
|
| 2092 |
|
|
push(@errorMessages, $metacat->getMessage());
|
| 2093 |
|
|
push(@errorMessages, "Failed during deleting $docid. Please check if you are authorized to delete this document.\n");
|
| 2094 |
|
|
}
|
| 2095 |
|
|
}
|
| 2096 |
|
|
}
|
| 2097 |
|
|
|
| 2098 |
1929
|
brooke
|
if (scalar(@errorMessages)) {
|
| 2099 |
1977
|
jones
|
# If any errors, print them in the response template
|
| 2100 |
|
|
$$templateVars{'status'} = 'failure';
|
| 2101 |
|
|
$$templateVars{'errorMessages'} = \@errorMessages;
|
| 2102 |
|
|
$error = 1;
|
| 2103 |
1929
|
brooke
|
}
|
| 2104 |
|
|
|
| 2105 |
|
|
# Process the response template
|
| 2106 |
|
|
if($deleteAll){
|
| 2107 |
|
|
|
| 2108 |
1977
|
jones
|
$$templateVars{'function'} = "deleted";
|
| 2109 |
|
|
$$templateVars{'section'} = "Deletion Status";
|
| 2110 |
|
|
$template->process( $responseTemplate, $templateVars);
|
| 2111 |
1929
|
brooke
|
}
|
| 2112 |
|
|
}
|
| 2113 |
|
|
|
| 2114 |
|
|
|
| 2115 |
|
|
################################################################################
|
| 2116 |
|
|
#
|
| 2117 |
|
|
# Do data validation and send the data to confirm data template.
|
| 2118 |
|
|
#
|
| 2119 |
|
|
################################################################################
|
| 2120 |
|
|
sub toConfirmData{
|
| 2121 |
|
|
# Check if any invalid parameters
|
| 2122 |
|
|
|
| 2123 |
|
|
my $invalidParams;
|
| 2124 |
|
|
if (! $error) {
|
| 2125 |
1977
|
jones
|
$invalidParams = validateParameters(0);
|
| 2126 |
|
|
if (scalar(@$invalidParams)) {
|
| 2127 |
|
|
$$templateVars{'status'} = 'failure';
|
| 2128 |
|
|
$$templateVars{'invalidParams'} = $invalidParams;
|
| 2129 |
|
|
$error = 1;
|
| 2130 |
1929
|
brooke
|
}
|
| 2131 |
1977
|
jones
|
}
|
| 2132 |
1929
|
brooke
|
|
| 2133 |
|
|
if (! $error) {
|
| 2134 |
1977
|
jones
|
# If no errors, then print out data in confirm Data template
|
| 2135 |
1929
|
brooke
|
|
| 2136 |
1977
|
jones
|
$$templateVars{'providerGivenName'} = $FORM::providerGivenName;
|
| 2137 |
|
|
$$templateVars{'providerSurName'} = $FORM::providerSurName;
|
| 2138 |
|
|
if($FORM::site eq "Select your station here."){
|
| 2139 |
|
|
$$templateVars{'site'} = "";
|
| 2140 |
|
|
}else{
|
| 2141 |
|
|
$$templateVars{'site'} = $FORM::site;
|
| 2142 |
|
|
}
|
| 2143 |
|
|
if($FORM::cfg eq "nceas"){
|
| 2144 |
|
|
$$templateVars{'wg'} = \@FORM::wg;
|
| 2145 |
|
|
}
|
| 2146 |
|
|
$$templateVars{'identifier'} = $FORM::identifier;
|
| 2147 |
|
|
$$templateVars{'title'} = $FORM::title;
|
| 2148 |
|
|
$$templateVars{'origNamefirst0'} = $FORM::origNamefirst0;
|
| 2149 |
|
|
$$templateVars{'origNamelast0'} = $FORM::origNamelast0;
|
| 2150 |
|
|
$$templateVars{'origNameOrg'} = $FORM::origNameOrg;
|
| 2151 |
|
|
# $$templateVars{'origRole0'} = $FORM::origRole0;
|
| 2152 |
|
|
$$templateVars{'origDelivery'} = $FORM::origDelivery;
|
| 2153 |
|
|
$$templateVars{'origCity'} = $FORM::origCity;
|
| 2154 |
|
|
if($FORM::origState eq "Select State Here."){
|
| 2155 |
|
|
$$templateVars{'origState'} = "";
|
| 2156 |
|
|
}else{
|
| 2157 |
|
|
$$templateVars{'origState'} = $FORM::origState;
|
| 2158 |
|
|
}
|
| 2159 |
|
|
$$templateVars{'origStateOther'} = $FORM::origStateOther;
|
| 2160 |
|
|
$$templateVars{'origZIP'} = $FORM::origZIP;
|
| 2161 |
|
|
$$templateVars{'origCountry'} = $FORM::origCountry;
|
| 2162 |
|
|
$$templateVars{'origPhone'} = $FORM::origPhone;
|
| 2163 |
|
|
$$templateVars{'origFAX'} = $FORM::origFAX;
|
| 2164 |
|
|
$$templateVars{'origEmail'} = $FORM::origEmail;
|
| 2165 |
|
|
$$templateVars{'useOrigAddress'} = $FORM::useOrigAddress;
|
| 2166 |
|
|
if($FORM::useOrigAddress eq "on"){
|
| 2167 |
|
|
$$templateVars{'origNamefirstContact'} = $FORM::origNamefirst0;
|
| 2168 |
|
|
$$templateVars{'origNamelastContact'} = $FORM::origNamelast0;
|
| 2169 |
|
|
$$templateVars{'origNameOrgContact'} = $FORM::origNameOrg;
|
| 2170 |
|
|
$$templateVars{'origDeliveryContact'} = $FORM::origDelivery;
|
| 2171 |
|
|
$$templateVars{'origCityContact'} = $FORM::origCity;
|
| 2172 |
|
|
if($FORM::origState eq "Select State Here."){
|
| 2173 |
|
|
$$templateVars{'origStateContact'} = "";
|
| 2174 |
|
|
}else{
|
| 2175 |
|
|
$$templateVars{'origStateContact'} = $FORM::origState;
|
| 2176 |
|
|
}
|
| 2177 |
|
|
$$templateVars{'origStateOtherContact'} = $FORM::origStateOther;
|
| 2178 |
|
|
$$templateVars{'origZIPContact'} = $FORM::origZIP;
|
| 2179 |
|
|
$$templateVars{'origCountryContact'} = $FORM::origCountry;
|
| 2180 |
|
|
$$templateVars{'origPhoneContact'} = $FORM::origPhone;
|
| 2181 |
|
|
$$templateVars{'origFAXContact'} = $FORM::origFAX;
|
| 2182 |
|
|
$$templateVars{'origEmailContact'} = $FORM::origEmail;
|
| 2183 |
|
|
}else{
|
| 2184 |
|
|
$$templateVars{'origNamefirstContact'} = $FORM::origNamefirstContact;
|
| 2185 |
|
|
$$templateVars{'origNamelastContact'} = $FORM::origNamelastContact;
|
| 2186 |
|
|
$$templateVars{'origNameOrgContact'} = $FORM::origNameOrgContact;
|
| 2187 |
|
|
$$templateVars{'origDeliveryContact'} = $FORM::origDeliveryContact;
|
| 2188 |
|
|
$$templateVars{'origCityContact'} = $FORM::origCityContact;
|
| 2189 |
|
|
if($FORM::origStateContact eq "Select State Here."){
|
| 2190 |
|
|
$$templateVars{'origStateContact'} = "";
|
| 2191 |
|
|
}else{
|
| 2192 |
|
|
$$templateVars{'origStateContact'} = $FORM::origStateContact;
|
| 2193 |
|
|
}
|
| 2194 |
|
|
$$templateVars{'origStateOtherContact'} = $FORM::origStateOtherContact;
|
| 2195 |
|
|
$$templateVars{'origZIPContact'} = $FORM::origZIPContact;
|
| 2196 |
|
|
$$templateVars{'origCountryContact'} = $FORM::origCountryContact;
|
| 2197 |
|
|
$$templateVars{'origPhoneContact'} = $FORM::origPhoneContact;
|
| 2198 |
|
|
$$templateVars{'origFAXContact'} = $FORM::origFAXContact;
|
| 2199 |
|
|
$$templateVars{'origEmailContact'} = $FORM::origEmailContact;
|
| 2200 |
|
|
}
|
| 2201 |
|
|
$$templateVars{'origNamefirst1'} = $FORM::origNamefirst1;
|
| 2202 |
|
|
$$templateVars{'origNamelast1'} = $FORM::origNamelast1;
|
| 2203 |
|
|
if($FORM::origNamefirst1 eq "" && $FORM::origNamelast1 eq ""){
|
| 2204 |
|
|
$$templateVars{'origRole1'} = "";
|
| 2205 |
|
|
}else{
|
| 2206 |
|
|
$$templateVars{'origRole1'} = $FORM::origRole1;
|
| 2207 |
|
|
}
|
| 2208 |
|
|
$$templateVars{'origNamefirst2'} = $FORM::origNamefirst2;
|
| 2209 |
|
|
$$templateVars{'origNamelast2'} = $FORM::origNamelast2;
|
| 2210 |
|
|
if($FORM::origNamefirst2 eq "" && $FORM::origNamelast2 eq ""){
|
| 2211 |
|
|
$$templateVars{'origRole2'} = "";
|
| 2212 |
|
|
}else{
|
| 2213 |
|
|
$$templateVars{'origRole2'} = $FORM::origRole2;
|
| 2214 |
|
|
}
|
| 2215 |
|
|
$$templateVars{'origNamefirst3'} = $FORM::origNamefirst3;
|
| 2216 |
|
|
$$templateVars{'origNamelast3'} = $FORM::origNamelast3;
|
| 2217 |
|
|
if($FORM::origNamefirst3 eq "" && $FORM::origNamelast3 eq ""){
|
| 2218 |
|
|
$$templateVars{'origRole3'} = "";
|
| 2219 |
|
|
}else{
|
| 2220 |
|
|
$$templateVars{'origRole3'} = $FORM::origRole3;
|
| 2221 |
|
|
}
|
| 2222 |
|
|
$$templateVars{'origNamefirst4'} = $FORM::origNamefirst4;
|
| 2223 |
|
|
$$templateVars{'origNamelast4'} = $FORM::origNamelast4;
|
| 2224 |
|
|
if($FORM::origNamefirst4 eq "" && $FORM::origNamelast4 eq ""){
|
| 2225 |
|
|
$$templateVars{'origRole4'} = "";
|
| 2226 |
|
|
}else{
|
| 2227 |
|
|
$$templateVars{'origRole4'} = $FORM::origRole4;
|
| 2228 |
|
|
}
|
| 2229 |
|
|
$$templateVars{'origNamefirst5'} = $FORM::origNamefirst5;
|
| 2230 |
|
|
$$templateVars{'origNamelast5'} = $FORM::origNamelast5;
|
| 2231 |
|
|
if($FORM::origNamefirst5 eq "" && $FORM::origNamelast5 eq ""){
|
| 2232 |
|
|
$$templateVars{'origRole5'} = "";
|
| 2233 |
|
|
}else{
|
| 2234 |
|
|
$$templateVars{'origRole5'} = $FORM::origRole5;
|
| 2235 |
|
|
}
|
| 2236 |
|
|
$$templateVars{'origNamefirst6'} = $FORM::origNamefirst6;
|
| 2237 |
|
|
$$templateVars{'origNamelast6'} = $FORM::origNamelast6;
|
| 2238 |
|
|
if($FORM::origNamefirst6 eq "" && $FORM::origNamelast6 eq ""){
|
| 2239 |
|
|
$$templateVars{'origRole6'} = "";
|
| 2240 |
|
|
}else{
|
| 2241 |
|
|
$$templateVars{'origRole6'} = $FORM::origRole6;
|
| 2242 |
|
|
}
|
| 2243 |
|
|
$$templateVars{'origNamefirst7'} = $FORM::origNamefirst7;
|
| 2244 |
|
|
$$templateVars{'origNamelast7'} = $FORM::origNamelast7;
|
| 2245 |
|
|
if($FORM::origNamefirst7 eq "" && $FORM::origNamelast7 eq ""){
|
| 2246 |
|
|
$$templateVars{'origRole7'} = "";
|
| 2247 |
|
|
}else{
|
| 2248 |
|
|
$$templateVars{'origRole7'} = $FORM::origRole7;
|
| 2249 |
|
|
}
|
| 2250 |
|
|
$$templateVars{'origNamefirst8'} = $FORM::origNamefirst8;
|
| 2251 |
|
|
$$templateVars{'origNamelast8'} = $FORM::origNamelast8;
|
| 2252 |
|
|
if($FORM::origNamefirst8 eq "" && $FORM::origNamelast8 eq ""){
|
| 2253 |
|
|
$$templateVars{'origRole8'} = "";
|
| 2254 |
|
|
}else{
|
| 2255 |
|
|
$$templateVars{'origRole8'} = $FORM::origRole8;
|
| 2256 |
|
|
}
|
| 2257 |
|
|
$$templateVars{'origNamefirst9'} = $FORM::origNamefirst9;
|
| 2258 |
|
|
$$templateVars{'origNamelast9'} = $FORM::origNamelast9;
|
| 2259 |
|
|
if($FORM::origNamefirst9 eq "" && $FORM::origNamelast9 eq ""){
|
| 2260 |
|
|
$$templateVars{'origRole9'} = "";
|
| 2261 |
|
|
}else{
|
| 2262 |
|
|
$$templateVars{'origRole9'} = $FORM::origRole9;
|
| 2263 |
|
|
}
|
| 2264 |
|
|
$$templateVars{'origNamefirst10'} = $FORM::origNamefirst10;
|
| 2265 |
|
|
$$templateVars{'origNamelast10'} = $FORM::origNamelast10;
|
| 2266 |
|
|
if($FORM::origNamefirst10 eq "" && $FORM::origNamelast10 eq ""){
|
| 2267 |
|
|
$$templateVars{'origRole10'} = "";
|
| 2268 |
|
|
}else{
|
| 2269 |
|
|
$$templateVars{'origRole10'} = $FORM::origRole10;
|
| 2270 |
|
|
}
|
| 2271 |
|
|
$$templateVars{'abstract'} = $FORM::abstract;
|
| 2272 |
|
|
$$templateVars{'keyword0'} = $FORM::keyword0;
|
| 2273 |
|
|
$$templateVars{'kwType0'} = $FORM::kwType0;
|
| 2274 |
|
|
$$templateVars{'kwTh0'} = $FORM::kwTh0;
|
| 2275 |
|
|
$$templateVars{'kwType1'} = $FORM::kwType1;
|
| 2276 |
|
|
$$templateVars{'keyword1'} = $FORM::keyword1;
|
| 2277 |
|
|
$$templateVars{'kwTh1'} = $FORM::kwTh1;
|
| 2278 |
|
|
$$templateVars{'kwType2'} = $FORM::kwType2;
|
| 2279 |
|
|
$$templateVars{'keyword2'} = $FORM::keyword2;
|
| 2280 |
|
|
$$templateVars{'kwTh2'} = $FORM::kwTh2;
|
| 2281 |
|
|
$$templateVars{'kwType3'} = $FORM::kwType3;
|
| 2282 |
|
|
$$templateVars{'keyword3'} = $FORM::keyword3;
|
| 2283 |
|
|
$$templateVars{'kwTh3'} = $FORM::kwTh3;
|
| 2284 |
|
|
$$templateVars{'kwType4'} = $FORM::kwType4;
|
| 2285 |
|
|
$$templateVars{'keyword4'} = $FORM::keyword4;
|
| 2286 |
|
|
$$templateVars{'kwTh4'} = $FORM::kwTh4;
|
| 2287 |
|
|
$$templateVars{'kwType5'} = $FORM::kwType5;
|
| 2288 |
|
|
$$templateVars{'keyword5'} = $FORM::keyword5;
|
| 2289 |
|
|
$$templateVars{'kwTh5'} = $FORM::kwTh5;
|
| 2290 |
|
|
$$templateVars{'kwType6'} = $FORM::kwType6;
|
| 2291 |
|
|
$$templateVars{'keyword6'} = $FORM::keyword6;
|
| 2292 |
|
|
$$templateVars{'kwTh6'} = $FORM::kwTh6;
|
| 2293 |
|
|
$$templateVars{'kwType7'} = $FORM::kwType7;
|
| 2294 |
|
|
$$templateVars{'keyword7'} = $FORM::keyword7;
|
| 2295 |
|
|
$$templateVars{'kwTh7'} = $FORM::kwTh7;
|
| 2296 |
|
|
$$templateVars{'kwType8'} = $FORM::kwType8;
|
| 2297 |
|
|
$$templateVars{'keyword8'} = $FORM::keyword8;
|
| 2298 |
|
|
$$templateVars{'kwTh8'} = $FORM::kwTh8;
|
| 2299 |
|
|
$$templateVars{'kwType9'} = $FORM::kwType9;
|
| 2300 |
|
|
$$templateVars{'keyword9'} = $FORM::keyword9;
|
| 2301 |
|
|
$$templateVars{'kwTh9'} = $FORM::kwTh9;
|
| 2302 |
|
|
$$templateVars{'addComments'} = $FORM::addComments;
|
| 2303 |
|
|
$$templateVars{'useConstraints'} = $FORM::useConstraints;
|
| 2304 |
|
|
$$templateVars{'useConstraintsOther'} = $FORM::useConstraintsOther;
|
| 2305 |
|
|
$$templateVars{'url'} = $FORM::url;
|
| 2306 |
|
|
if($FORM::dataMedium eq "Select type of medium here."){
|
| 2307 |
|
|
$$templateVars{'dataMedium'} = "";
|
| 2308 |
|
|
}else{
|
| 2309 |
|
|
$$templateVars{'dataMedium'} = $FORM::dataMedium;
|
| 2310 |
|
|
}
|
| 2311 |
|
|
$$templateVars{'dataMediumOther'} = $FORM::dataMediumOther;
|
| 2312 |
|
|
$$templateVars{'beginningYear'} = $FORM::beginningYear;
|
| 2313 |
|
|
$$templateVars{'beginningMonth'} = $FORM::beginningMonth;
|
| 2314 |
|
|
$$templateVars{'beginningDay'} = $FORM::beginningDay;
|
| 2315 |
|
|
$$templateVars{'endingYear'} = $FORM::endingYear;
|
| 2316 |
|
|
$$templateVars{'endingMonth'} = $FORM::endingMonth;
|
| 2317 |
|
|
$$templateVars{'endingDay'} = $FORM::endingDay;
|
| 2318 |
1983
|
jones
|
$$templateVars{'geogdesc'} = $FORM::geogdesc;
|
| 2319 |
1977
|
jones
|
$$templateVars{'useSiteCoord'} = $FORM::useSiteCoord;
|
| 2320 |
|
|
$$templateVars{'latDeg1'} = $FORM::latDeg1;
|
| 2321 |
|
|
$$templateVars{'latMin1'} = $FORM::latMin1;
|
| 2322 |
|
|
$$templateVars{'latSec1'} = $FORM::latSec1;
|
| 2323 |
|
|
$$templateVars{'hemisphLat1'} = $FORM::hemisphLat1;
|
| 2324 |
|
|
$$templateVars{'longDeg1'} = $FORM::longDeg1;
|
| 2325 |
|
|
$$templateVars{'longMin1'} = $FORM::longMin1;
|
| 2326 |
|
|
$$templateVars{'longSec1'} = $FORM::longSec1;
|
| 2327 |
|
|
$$templateVars{'hemisphLong1'} = $FORM::hemisphLong1;
|
| 2328 |
|
|
$$templateVars{'latDeg2'} = $FORM::latDeg2;
|
| 2329 |
|
|
$$templateVars{'latMin2'} = $FORM::latMin2;
|
| 2330 |
|
|
$$templateVars{'latSec2'} = $FORM::latSec2;
|
| 2331 |
|
|
$$templateVars{'hemisphLat2'} = $FORM::hemisphLat2;
|
| 2332 |
|
|
$$templateVars{'longDeg2'} = $FORM::longDeg2;
|
| 2333 |
|
|
$$templateVars{'longMin2'} = $FORM::longMin2;
|
| 2334 |
|
|
$$templateVars{'longSec2'} = $FORM::longSec2;
|
| 2335 |
|
|
$$templateVars{'hemisphLong2'} = $FORM::hemisphLong2;
|
| 2336 |
1984
|
jones
|
|
| 2337 |
|
|
$$templateVars{'taxaCount'} = $FORM::taxaCount;
|
| 2338 |
|
|
foreach my $trn (param()) {
|
| 2339 |
|
|
if ($trn =~ /taxonRankName/) {
|
| 2340 |
|
|
my $taxIndex = $trn;
|
| 2341 |
|
|
$taxIndex =~ s/taxonRankName//; # get the index of the parameter 0, ..., 10
|
| 2342 |
|
|
my $trv = "taxonRankValue".$taxIndex;
|
| 2343 |
|
|
if ( $taxIndex =~ /[0-9]/ ){
|
| 2344 |
|
|
if (hasContent(param($trn)) && hasContent(param($trv))) {
|
| 2345 |
|
|
debug("Registry processing taxon: $trn = ".param($trn)." $trv = ".param($trv));
|
| 2346 |
|
|
$$templateVars{$trn} = param($trn);
|
| 2347 |
|
|
$$templateVars{$trv} = param($trv);
|
| 2348 |
|
|
}
|
| 2349 |
|
|
}
|
| 2350 |
|
|
}
|
| 2351 |
|
|
}
|
| 2352 |
1985
|
jones
|
$$templateVars{'taxaAuth'} = $FORM::taxaAuth;
|
| 2353 |
1984
|
jones
|
|
| 2354 |
1982
|
jones
|
$$templateVars{'methodTitle'} = $FORM::methodTitle;
|
| 2355 |
|
|
$$templateVars{'methodPara'} = \@FORM::methodPara;
|
| 2356 |
1989
|
jones
|
$$templateVars{'studyExtentDescription'} = $FORM::studyExtentDescription;
|
| 2357 |
|
|
$$templateVars{'samplingDescription'} = $FORM::samplingDescription;
|
| 2358 |
1977
|
jones
|
$$templateVars{'docid'} = $FORM::docid;
|
| 2359 |
1929
|
brooke
|
|
| 2360 |
1977
|
jones
|
$$templateVars{'section'} = "Confirm Data";
|
| 2361 |
|
|
$template->process( $confirmDataTemplate, $templateVars);
|
| 2362 |
1929
|
brooke
|
|
| 2363 |
1977
|
jones
|
} else{
|
| 2364 |
|
|
# Errors from validation function. print the errors out using the response template
|
| 2365 |
|
|
if (scalar(@errorMessages)) {
|
| 2366 |
|
|
$$templateVars{'status'} = 'failure';
|
| 2367 |
|
|
$$templateVars{'errorMessages'} = \@errorMessages;
|
| 2368 |
|
|
$error = 1;
|
| 2369 |
|
|
}
|
| 2370 |
1929
|
brooke
|
# Create our HTML response and send it back
|
| 2371 |
1977
|
jones
|
$$templateVars{'function'} = "submitted";
|
| 2372 |
|
|
$$templateVars{'section'} = "Submission Status";
|
| 2373 |
|
|
$template->process( $responseTemplate, $templateVars);
|
| 2374 |
1929
|
brooke
|
}
|
| 2375 |
|
|
}
|
| 2376 |
|
|
|
| 2377 |
|
|
|
| 2378 |
|
|
################################################################################
|
| 2379 |
|
|
#
|
| 2380 |
|
|
# From confirm Data template - user wants to make some changes.
|
| 2381 |
|
|
#
|
| 2382 |
|
|
################################################################################
|
| 2383 |
|
|
sub confirmDataToReEntryData{
|
| 2384 |
|
|
my @sortedSites;
|
| 2385 |
|
|
foreach my $site (sort @sitelist) {
|
| 2386 |
|
|
push(@sortedSites, $site);
|
| 2387 |
|
|
}
|
| 2388 |
|
|
|
| 2389 |
|
|
$$templateVars{'siteList'} = \@sortedSites;
|
| 2390 |
|
|
$$templateVars{'section'} = "Re-Entry Form";
|
| 2391 |
|
|
|
| 2392 |
|
|
$$templateVars{'providerGivenName'} = $FORM::providerGivenName;
|
| 2393 |
|
|
$$templateVars{'providerSurName'} = $FORM::providerSurName;
|
| 2394 |
|
|
$$templateVars{'site'} = $FORM::site;
|
| 2395 |
1982
|
jones
|
if ($FORM::cfg eq "nceas") {
|
| 2396 |
1977
|
jones
|
my $projects = getProjectList();
|
| 2397 |
|
|
$$templateVars{'projects'} = $projects;
|
| 2398 |
|
|
$$templateVars{'wg'} = \@FORM::wg;
|
| 2399 |
|
|
}
|
| 2400 |
1929
|
brooke
|
$$templateVars{'identifier'} = $FORM::identifier;
|
| 2401 |
|
|
$$templateVars{'title'} = $FORM::title;
|
| 2402 |
|
|
$$templateVars{'origNamefirst0'} = $FORM::origNamefirst0;
|
| 2403 |
|
|
$$templateVars{'origNamelast0'} = $FORM::origNamelast0;
|
| 2404 |
|
|
$$templateVars{'origNameOrg'} = $FORM::origNameOrg;
|
| 2405 |
|
|
# $$templateVars{'origRole0'} = $FORM::origRole0;
|
| 2406 |
|
|
$$templateVars{'origDelivery'} = $FORM::origDelivery;
|
| 2407 |
|
|
$$templateVars{'origCity'} = $FORM::origCity;
|
| 2408 |
|
|
$$templateVars{'origState'} = $FORM::origState;
|
| 2409 |
|
|
$$templateVars{'origStateOther'} = $FORM::origStateOther;
|
| 2410 |
|
|
$$templateVars{'origZIP'} = $FORM::origZIP;
|
| 2411 |
|
|
$$templateVars{'origCountry'} = $FORM::origCountry;
|
| 2412 |
|
|
$$templateVars{'origPhone'} = $FORM::origPhone;
|
| 2413 |
|
|
$$templateVars{'origFAX'} = $FORM::origFAX;
|
| 2414 |
|
|
$$templateVars{'origEmail'} = $FORM::origEmail;
|
| 2415 |
1977
|
jones
|
if ($FORM::useSiteCoord ne "") {
|
| 2416 |
|
|
$$templateVars{'useOrigAddress'} = "CHECKED";
|
| 2417 |
1929
|
brooke
|
}else{
|
| 2418 |
1977
|
jones
|
$$templateVars{'useOrigAddress'} = $FORM::useOrigAddress;
|
| 2419 |
1929
|
brooke
|
}
|
| 2420 |
|
|
$$templateVars{'origNamefirstContact'} = $FORM::origNamefirstContact;
|
| 2421 |
|
|
$$templateVars{'origNamelastContact'} = $FORM::origNamelastContact;
|
| 2422 |
|
|
$$templateVars{'origNameOrgContact'} = $FORM::origNameOrgContact;
|
| 2423 |
|
|
$$templateVars{'origDeliveryContact'} = $FORM::origDeliveryContact;
|
| 2424 |
|
|
$$templateVars{'origCityContact'} = $FORM::origCityContact;
|
| 2425 |
|
|
$$templateVars{'origStateContact'} = $FORM::origStateContact;
|
| 2426 |
|
|
$$templateVars{'origStateOtherContact'} = $FORM::origStateOtherContact;
|
| 2427 |
|
|
$$templateVars{'origZIPContact'} = $FORM::origZIPContact;
|
| 2428 |
|
|
$$templateVars{'origCountryContact'} = $FORM::origCountryContact;
|
| 2429 |
|
|
$$templateVars{'origPhoneContact'} = $FORM::origPhoneContact;
|
| 2430 |
|
|
$$templateVars{'origFAXContact'} = $FORM::origFAXContact;
|
| 2431 |
|
|
$$templateVars{'origEmailContact'} = $FORM::origEmailContact;
|
| 2432 |
|
|
$$templateVars{'origNamefirst1'} = $FORM::origNamefirst1;
|
| 2433 |
|
|
$$templateVars{'origNamelast1'} = $FORM::origNamelast1;
|
| 2434 |
|
|
$$templateVars{'origRole1'} = $FORM::origRole1;
|
| 2435 |
|
|
$$templateVars{'origNamefirst2'} = $FORM::origNamefirst2;
|
| 2436 |
|
|
$$templateVars{'origNamelast2'} = $FORM::origNamelast2;
|
| 2437 |
|
|
$$templateVars{'origRole2'} = $FORM::origRole2;
|
| 2438 |
|
|
$$templateVars{'origNamefirst3'} = $FORM::origNamefirst3;
|
| 2439 |
|
|
$$templateVars{'origNamelast3'} = $FORM::origNamelast3;
|
| 2440 |
|
|
$$templateVars{'origRole3'} = $FORM::origRole3;
|
| 2441 |
|
|
$$templateVars{'origNamefirst4'} = $FORM::origNamefirst4;
|
| 2442 |
|
|
$$templateVars{'origNamelast4'} = $FORM::origNamelast4;
|
| 2443 |
|
|
$$templateVars{'origRole4'} = $FORM::origRole4;
|
| 2444 |
|
|
$$templateVars{'origNamefirst5'} = $FORM::origNamefirst5;
|
| 2445 |
|
|
$$templateVars{'origNamelast5'} = $FORM::origNamelast5;
|
| 2446 |
|
|
$$templateVars{'origRole5'} = $FORM::origRole5;
|
| 2447 |
|
|
$$templateVars{'origNamefirst6'} = $FORM::origNamefirst6;
|
| 2448 |
|
|
$$templateVars{'origNamelast6'} = $FORM::origNamelast6;
|
| 2449 |
|
|
$$templateVars{'origRole6'} = $FORM::origRole6;
|
| 2450 |
|
|
$$templateVars{'origNamefirst7'} = $FORM::origNamefirst7;
|
| 2451 |
|
|
$$templateVars{'origNamelast7'} = $FORM::origNamelast7;
|
| 2452 |
|
|
$$templateVars{'origRole7'} = $FORM::origRole7;
|
| 2453 |
|
|
$$templateVars{'origNamefirst8'} = $FORM::origNamefirst8;
|
| 2454 |
|
|
$$templateVars{'origNamelast8'} = $FORM::origNamelast8;
|
| 2455 |
|
|
$$templateVars{'origRole8'} = $FORM::origRole8;
|
| 2456 |
|
|
$$templateVars{'origNamefirst9'} = $FORM::origNamefirst9;
|
| 2457 |
|
|
$$templateVars{'origNamelast9'} = $FORM::origNamelast9;
|
| 2458 |
|
|
$$templateVars{'origRole9'} = $FORM::origRole9;
|
| 2459 |
|
|
$$templateVars{'origNamefirst10'} = $FORM::origNamefirst10;
|
| 2460 |
|
|
$$templateVars{'origNamelast10'} = $FORM::origNamelast10;
|
| 2461 |
|
|
$$templateVars{'origRole10'} = $FORM::origRole10;
|
| 2462 |
|
|
$$templateVars{'abstract'} = $FORM::abstract;
|
| 2463 |
|
|
$$templateVars{'keyword0'} = $FORM::keyword0;
|
| 2464 |
|
|
$$templateVars{'kwType0'} = $FORM::kwType0;
|
| 2465 |
|
|
$$templateVars{'kwTh0'} = $FORM::kwTh0;
|
| 2466 |
|
|
$$templateVars{'kwType1'} = $FORM::kwType1;
|
| 2467 |
|
|
$$templateVars{'keyword1'} = $FORM::keyword1;
|
| 2468 |
|
|
$$templateVars{'kwTh1'} = $FORM::kwTh1;
|
| 2469 |
|
|
$$templateVars{'kwType2'} = $FORM::kwType2;
|
| 2470 |
|
|
$$templateVars{'keyword2'} = $FORM::keyword2;
|
| 2471 |
|
|
$$templateVars{'kwTh2'} = $FORM::kwTh2;
|
| 2472 |
|
|
$$templateVars{'kwType3'} = $FORM::kwType3;
|
| 2473 |
|
|
$$templateVars{'keyword3'} = $FORM::keyword3;
|
| 2474 |
|
|
$$templateVars{'kwTh3'} = $FORM::kwTh3;
|
| 2475 |
|
|
$$templateVars{'kwType4'} = $FORM::kwType4;
|
| 2476 |
|
|
$$templateVars{'keyword4'} = $FORM::keyword4;
|
| 2477 |
|
|
$$templateVars{'kwTh4'} = $FORM::kwTh4;
|
| 2478 |
|
|
$$templateVars{'kwType5'} = $FORM::kwType5;
|
| 2479 |
|
|
$$templateVars{'keyword5'} = $FORM::keyword5;
|
| 2480 |
|
|
$$templateVars{'kwTh5'} = $FORM::kwTh5;
|
| 2481 |
|
|
$$templateVars{'kwType6'} = $FORM::kwType6;
|
| 2482 |
|
|
$$templateVars{'keyword6'} = $FORM::keyword6;
|
| 2483 |
|
|
$$templateVars{'kwTh6'} = $FORM::kwTh6;
|
| 2484 |
|
|
$$templateVars{'kwType7'} = $FORM::kwType7;
|
| 2485 |
|
|
$$templateVars{'keyword7'} = $FORM::keyword7;
|
| 2486 |
|
|
$$templateVars{'kwTh7'} = $FORM::kwTh7;
|
| 2487 |
|
|
$$templateVars{'kwType8'} = $FORM::kwType8;
|
| 2488 |
|
|
$$templateVars{'keyword8'} = $FORM::keyword8;
|
| 2489 |
|
|
$$templateVars{'kwTh8'} = $FORM::kwTh8;
|
| 2490 |
|
|
$$templateVars{'kwType9'} = $FORM::kwType9;
|
| 2491 |
|
|
$$templateVars{'keyword9'} = $FORM::keyword9;
|
| 2492 |
|
|
$$templateVars{'kwTh9'} = $FORM::kwTh9;
|
| 2493 |
|
|
$$templateVars{'addComments'} = $FORM::addComments;
|
| 2494 |
|
|
$$templateVars{'useConstraints'} = $FORM::useConstraints;
|
| 2495 |
|
|
$$templateVars{'useConstraintsOther'} = $FORM::useConstraintsOther;
|
| 2496 |
|
|
$$templateVars{'url'} = $FORM::url;
|
| 2497 |
|
|
$$templateVars{'dataMedium'} = $FORM::dataMedium;
|
| 2498 |
|
|
$$templateVars{'dataMediumOther'} = $FORM::dataMediumOther;
|
| 2499 |
|
|
$$templateVars{'beginningYear'} = $FORM::beginningYear;
|
| 2500 |
|
|
$$templateVars{'beginningMonth'} = $FORM::beginningMonth;
|
| 2501 |
|
|
$$templateVars{'beginningDay'} = $FORM::beginningDay;
|
| 2502 |
|
|
$$templateVars{'endingYear'} = $FORM::endingYear;
|
| 2503 |
|
|
$$templateVars{'endingMonth'} = $FORM::endingMonth;
|
| 2504 |
|
|
$$templateVars{'endingDay'} = $FORM::endingDay;
|
| 2505 |
1983
|
jones
|
$$templateVars{'geogdesc'} = $FORM::geogdesc;
|
| 2506 |
1929
|
brooke
|
if($FORM::useSiteCoord ne ""){
|
| 2507 |
1977
|
jones
|
$$templateVars{'useSiteCoord'} = "CHECKED";
|
| 2508 |
1929
|
brooke
|
}else{
|
| 2509 |
1977
|
jones
|
$$templateVars{'useSiteCoord'} = "";
|
| 2510 |
1929
|
brooke
|
}
|
| 2511 |
|
|
$$templateVars{'latDeg1'} = $FORM::latDeg1;
|
| 2512 |
|
|
$$templateVars{'latMin1'} = $FORM::latMin1;
|
| 2513 |
|
|
$$templateVars{'latSec1'} = $FORM::latSec1;
|
| 2514 |
|
|
$$templateVars{'hemisphLat1'} = $FORM::hemisphLat1;
|
| 2515 |
|
|
$$templateVars{'longDeg1'} = $FORM::longDeg1;
|
| 2516 |
|
|
$$templateVars{'longMin1'} = $FORM::longMin1;
|
| 2517 |
|
|
$$templateVars{'longSec1'} = $FORM::longSec1;
|
| 2518 |
|
|
$$templateVars{'hemisphLong1'} = $FORM::hemisphLong1;
|
| 2519 |
|
|
$$templateVars{'latDeg2'} = $FORM::latDeg2;
|
| 2520 |
|
|
$$templateVars{'latMin2'} = $FORM::latMin2;
|
| 2521 |
|
|
$$templateVars{'latSec2'} = $FORM::latSec2;
|
| 2522 |
|
|
$$templateVars{'hemisphLat2'} = $FORM::hemisphLat2;
|
| 2523 |
|
|
$$templateVars{'longDeg2'} = $FORM::longDeg2;
|
| 2524 |
|
|
$$templateVars{'longMin2'} = $FORM::longMin2;
|
| 2525 |
|
|
$$templateVars{'longSec2'} = $FORM::longSec2;
|
| 2526 |
|
|
$$templateVars{'hemisphLong2'} = $FORM::hemisphLong2;
|
| 2527 |
1985
|
jones
|
$$templateVars{'taxaCount'} = $FORM::taxaCount;
|
| 2528 |
|
|
foreach my $trn (param()) {
|
| 2529 |
|
|
if ($trn =~ /taxonRankName/) {
|
| 2530 |
|
|
my $taxIndex = $trn;
|
| 2531 |
|
|
$taxIndex =~ s/taxonRankName//; # get the index of the parameter 0, ..., 10
|
| 2532 |
|
|
my $trv = "taxonRankValue".$taxIndex;
|
| 2533 |
|
|
if ( $taxIndex =~ /[0-9]/ ){
|
| 2534 |
|
|
if (hasContent(param($trn)) && hasContent(param($trv))) {
|
| 2535 |
|
|
debug("Registry processing taxon: $trn = ".param($trn)." $trv = ".param($trv));
|
| 2536 |
|
|
$$templateVars{$trn} = param($trn);
|
| 2537 |
|
|
$$templateVars{$trv} = param($trv);
|
| 2538 |
|
|
}
|
| 2539 |
|
|
}
|
| 2540 |
|
|
}
|
| 2541 |
1982
|
jones
|
}
|
| 2542 |
1985
|
jones
|
$$templateVars{'taxaAuth'} = $FORM::taxaAuth;
|
| 2543 |
|
|
$$templateVars{'methodTitle'} = $FORM::methodTitle;
|
| 2544 |
|
|
$$templateVars{'methodPara'} = \@FORM::methodPara;
|
| 2545 |
1989
|
jones
|
$$templateVars{'studyExtentDescription'} = $FORM::studyExtentDescription;
|
| 2546 |
|
|
$$templateVars{'samplingDescription'} = $FORM::samplingDescription;
|
| 2547 |
1929
|
brooke
|
$$templateVars{'docid'} = $FORM::docid;
|
| 2548 |
|
|
|
| 2549 |
|
|
$$templateVars{'form'} = 're_entry';
|
| 2550 |
|
|
$template->process( $entryFormTemplate, $templateVars);
|
| 2551 |
|
|
}
|
| 2552 |
|
|
|
| 2553 |
|
|
|
| 2554 |
|
|
################################################################################
|
| 2555 |
|
|
#
|
| 2556 |
|
|
# check if there is multiple occurence of the given tag and find its value.
|
| 2557 |
|
|
#
|
| 2558 |
|
|
################################################################################
|
| 2559 |
|
|
|
| 2560 |
|
|
sub findValue {
|
| 2561 |
|
|
my $node = shift;
|
| 2562 |
|
|
my $value = shift;
|
| 2563 |
|
|
my $result;
|
| 2564 |
|
|
my $tempNode;
|
| 2565 |
|
|
|
| 2566 |
|
|
$result = $node->findnodes("./$value");
|
| 2567 |
1977
|
jones
|
if ($result->size > 1) {
|
| 2568 |
|
|
errMoreThanOne("$value");
|
| 2569 |
1929
|
brooke
|
} else {
|
| 2570 |
1977
|
jones
|
foreach $tempNode ($result->get_nodelist){
|
| 2571 |
|
|
#print $tempNode->nodeName().":".$tempNode->textContent();
|
| 2572 |
|
|
#print "\n";
|
| 2573 |
|
|
return $tempNode->textContent();
|
| 2574 |
|
|
}
|
| 2575 |
1929
|
brooke
|
}
|
| 2576 |
|
|
}
|
| 2577 |
|
|
|
| 2578 |
|
|
|
| 2579 |
|
|
################################################################################
|
| 2580 |
|
|
#
|
| 2581 |
|
|
# check if given tags has any children. if not return the value
|
| 2582 |
|
|
#
|
| 2583 |
|
|
################################################################################
|
| 2584 |
|
|
sub findValueNoChild {
|
| 2585 |
|
|
my $node = shift;
|
| 2586 |
|
|
my $value = shift;
|
| 2587 |
|
|
my $tempNode;
|
| 2588 |
|
|
my $childNodes;
|
| 2589 |
|
|
my $result;
|
| 2590 |
|
|
my $error;
|
| 2591 |
|
|
|
| 2592 |
|
|
$result = $node->findnodes("./$value");
|
| 2593 |
1977
|
jones
|
if($result->size > 1){
|
| 2594 |
|
|
errMoreThanOne("$value");
|
| 2595 |
|
|
} else {
|
| 2596 |
|
|
foreach $tempNode ($result->get_nodelist) {
|
| 2597 |
|
|
$childNodes = $tempNode->childNodes;
|
| 2598 |
|
|
if ($childNodes->size() > 1) {
|
| 2599 |
|
|
$error ="The tag $value has children which cannot be shown using the form. Please use Morpho to edit this document";
|
| 2600 |
|
|
push(@errorMessages, $error);
|
| 2601 |
|
|
#if ($DEBUG == 1){ print $error."\n";}
|
| 2602 |
|
|
} else {
|
| 2603 |
|
|
#print $tempNode->nodeName().":".$tempNode->textContent();
|
| 2604 |
|
|
#print "\n";
|
| 2605 |
|
|
return $tempNode->textContent();
|
| 2606 |
|
|
}
|
| 2607 |
|
|
}
|
| 2608 |
|
|
}
|
| 2609 |
1929
|
brooke
|
}
|
| 2610 |
|
|
|
| 2611 |
|
|
|
| 2612 |
|
|
################################################################################
|
| 2613 |
|
|
#
|
| 2614 |
|
|
# check if given tags are children of given node.
|
| 2615 |
|
|
#
|
| 2616 |
|
|
################################################################################
|
| 2617 |
|
|
sub dontOccur {
|
| 2618 |
|
|
my $node = shift;
|
| 2619 |
|
|
my $value = shift;
|
| 2620 |
|
|
my $errVal = shift;
|
| 2621 |
|
|
|
| 2622 |
|
|
my $result = $node->findnodes("$value");
|
| 2623 |
|
|
if($result->size > 0){
|
| 2624 |
1977
|
jones
|
$error ="One of the following tags found: $errVal. Please use Morpho to edit this document";
|
| 2625 |
|
|
push(@errorMessages, $error."\n");
|
| 2626 |
|
|
#if ($DEBUG == 1){ print $error;}
|
| 2627 |
1929
|
brooke
|
}
|
| 2628 |
|
|
}
|
| 2629 |
|
|
|
| 2630 |
|
|
|
| 2631 |
|
|
################################################################################
|
| 2632 |
|
|
#
|
| 2633 |
|
|
# print out error for more than one occurence of a given tag
|
| 2634 |
|
|
#
|
| 2635 |
|
|
################################################################################
|
| 2636 |
|
|
sub errMoreThanOne {
|
| 2637 |
|
|
my $value = shift;
|
| 2638 |
|
|
my $error ="More than one occurence of the tag $value found. Please use Morpho to edit this document";
|
| 2639 |
|
|
push(@errorMessages, $error."\n");
|
| 2640 |
|
|
# if ($DEBUG == 1){ print $error;}
|
| 2641 |
|
|
}
|
| 2642 |
|
|
|
| 2643 |
|
|
|
| 2644 |
|
|
################################################################################
|
| 2645 |
|
|
#
|
| 2646 |
|
|
# print out error for more than given number of occurences of a given tag
|
| 2647 |
|
|
#
|
| 2648 |
|
|
################################################################################
|
| 2649 |
|
|
sub errMoreThanN {
|
| 2650 |
|
|
my $value = shift;
|
| 2651 |
|
|
my $error ="More occurences of the tag $value found than that can be shown in the form. Please use Morpho to edit this document";
|
| 2652 |
|
|
push(@errorMessages, $error);
|
| 2653 |
|
|
#if ($DEBUG == 1){ print $error."\n";}
|
| 2654 |
|
|
}
|
| 2655 |
|
|
|
| 2656 |
|
|
|
| 2657 |
|
|
################################################################################
|
| 2658 |
|
|
#
|
| 2659 |
|
|
# convert coord to degrees, minutes and seconds form.
|
| 2660 |
|
|
#
|
| 2661 |
|
|
################################################################################
|
| 2662 |
|
|
#sub convertCoord {
|
| 2663 |
|
|
# my $wx = shift;
|
| 2664 |
|
|
# print $deg." ".$min." ".$sec;
|
| 2665 |
|
|
# print "\n";
|
| 2666 |
|
|
#}
|
| 2667 |
|
|
|
| 2668 |
|
|
|
| 2669 |
1955
|
jones
|
################################################################################
|
| 2670 |
|
|
#
|
| 2671 |
|
|
# print debugging messages to stderr
|
| 2672 |
|
|
#
|
| 2673 |
|
|
################################################################################
|
| 2674 |
|
|
sub debug {
|
| 2675 |
|
|
my $msg = shift;
|
| 2676 |
|
|
|
| 2677 |
|
|
if ($debug) {
|
| 2678 |
|
|
print STDERR "$msg\n";
|
| 2679 |
|
|
}
|
| 2680 |
|
|
}
|
| 2681 |
1973
|
jones
|
|
| 2682 |
|
|
################################################################################
|
| 2683 |
|
|
#
|
| 2684 |
|
|
# get the list of projects
|
| 2685 |
|
|
#
|
| 2686 |
|
|
################################################################################
|
| 2687 |
|
|
sub getProjectList {
|
| 2688 |
|
|
|
| 2689 |
1993
|
jones
|
use NCEAS::AdminDB;
|
| 2690 |
|
|
my $admindb = NCEAS::AdminDB->new();
|
| 2691 |
|
|
$admindb->connect($nceas_db, $nceas_db_user, $nceas_db_password);
|
| 2692 |
|
|
my $projects = $admindb->getProjects();
|
| 2693 |
|
|
#my $projects = getTestProjectList();
|
| 2694 |
|
|
return $projects;
|
| 2695 |
|
|
}
|
| 2696 |
1973
|
jones
|
|
| 2697 |
1993
|
jones
|
################################################################################
|
| 2698 |
|
|
#
|
| 2699 |
|
|
# get a test list of projects for use only in testing where the NCEAS
|
| 2700 |
|
|
# admin db is not available.
|
| 2701 |
|
|
#
|
| 2702 |
|
|
################################################################################
|
| 2703 |
|
|
sub getTestProjectList {
|
| 2704 |
1973
|
jones
|
# This block is for testing only! Remove for production use
|
| 2705 |
|
|
my @row1;
|
| 2706 |
1974
|
jones
|
$row1[0] = 6000; $row1[1] = 'Andelman'; $row1[2] = 'Sandy'; $row1[3] = 'The very long and windy path to an apparent ecological conclusion: statistics lie';
|
| 2707 |
1973
|
jones
|
my @row2;
|
| 2708 |
1974
|
jones
|
$row2[0] = 7000; $row2[1] = 'Bascompte'; $row2[2] = 'Jordi'; $row2[3] = 'Postdoctoral Fellow';
|
| 2709 |
1980
|
jones
|
my @row3;
|
| 2710 |
|
|
$row3[0] = 7001; $row3[1] = 'Hackett'; $row3[2] = 'Edward'; $row3[3] = 'Sociology rules the world';
|
| 2711 |
|
|
my @row4;
|
| 2712 |
|
|
$row4[0] = 7002; $row4[1] = 'Jones'; $row4[2] = 'Matthew'; $row4[3] = 'Informatics rules the world';
|
| 2713 |
|
|
my @row5;
|
| 2714 |
|
|
$row5[0] = 7003; $row5[1] = 'Schildhauer'; $row5[2] = 'Mark'; $row5[3] = 'Excel rocks my world, assuming a, b, and c';
|
| 2715 |
|
|
my @row6;
|
| 2716 |
|
|
$row6[0] = 7004; $row6[1] = 'Rogers'; $row6[2] = 'Bill'; $row6[3] = 'Graduate Intern';
|
| 2717 |
|
|
my @row7;
|
| 2718 |
|
|
$row7[0] = 7005; $row7[1] = 'Zedfried'; $row7[2] = 'Karl'; $row7[3] = 'A multivariate analysis of thing that go bump in the night';
|
| 2719 |
1973
|
jones
|
my @projects;
|
| 2720 |
|
|
$projects[0] = \@row1;
|
| 2721 |
|
|
$projects[1] = \@row2;
|
| 2722 |
1980
|
jones
|
$projects[2] = \@row3;
|
| 2723 |
|
|
$projects[3] = \@row4;
|
| 2724 |
|
|
$projects[4] = \@row5;
|
| 2725 |
|
|
$projects[5] = \@row6;
|
| 2726 |
|
|
$projects[6] = \@row7;
|
| 2727 |
1973
|
jones
|
return \@projects;
|
| 2728 |
|
|
}
|